AT2G45610

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015105
Physical Location & Seq
Forward (+)
18791289 .. 18792586
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45610.1

Sequence Viewer

Length: 975 bp
ATGTCACGTGACTCTCCTCCCGCATTTGATCCATACAAACACCTCAACATAACAATCAACCCCAACGGCTCTTGCACGCGCCATTTCGTTTGGCCGAGGGTTGAACCCGACCCGGATCCATGCCCCGGCAAGCTCGCCGCTTCCAAAGACGTAACCATTAACCACGAAACCGGCGTGTCCGTACGTATTTTCCGACCAACTAATCTACCATCCAATGATAACGCCGTGGCTCGTCTCCCAATCATCATCCATCTCCACGGCTCCGGTTGGATCCTTTACCCGGCCAATTCTGCCGCAAATGACCGTTGTTGCTCTCAAATGGCCAGTGAGTTAACAGTGATTGTTGTCTCCGTACACTATCGTTTGCCTCCGGAGCATAGACTCCCAGCTCAATACGACGACGCATTAGATGCTCTGCTTTGGGTCAAACAACAAGTCGTTGACTCAACCAACGGCGAGCCGTGGCTTAAGGACTACGCCGATTTCTCACGGTGTTACATATGCGGTTCGAGTAACGGCGCTAACATCGCTTTCCAATTGGCACTGAGATCGTTAGACCACGATTTAACGCCGTTACAAATCGACGGTTGCGTGTTTTACCAACCGCTTTTTGGCGGTAAAACGAGGACAAAATCGGAGCTTAAGAATTTCGCCGACCCGGTAATGCCGGTTCCTGCGGTTGACGCCATGTGGGAACTATCTTTGCCGGTAGGTGTTGATCGGGATCATAGGTACTGTAATCCATTGGGTTACTTGCCGCAAAAGGAGAAAGTTGGACGGCTTGGACGGTGTTTGGTGATCGGTTACGGCGGAGACACGTCGTTGGATCGACAACAAGATTTCGTGAATTTGTTGGTTGCAGCTGGAGTTAGGGTTGAAGCAAGGTTTGACGACGCCGGTTTCCATAGCATCGAGCTGGTCGATCCACGACGAGCCGTCGCTCTTCTTAATATGATTAGAGATTTTATAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

324

Amino Acids

36.02

Weight (kDa)

6.05

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 74 - 187 1.4e-09 BD-FAE
Abhydrolase_3 PF07859 82 - 304 1.7e-51 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015105)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45610
fragaria_vesca FvH4_7g12520
malus_domestica MD02G1198300.v1.1
prunus_persica Prupe.2G149700_v2.0.a1
pyrus_communis pycom02g16190
rosa_chinensis RchiOBHm_Chr1g0351421
rosa_laevigata RLG00000028408
rosa_multiflora Rmu_sc0000664.1_g000007 Rmu_sc0005320.1_g000004
rosa_roxburghii Rroxscaffold_4G00303840
rosa_rugosa Rorug01G0218000
rosa_samantha Rh1AG232500 Rh1BG203300 Rh1CG217200 Rh1DG230300
rosa_wichuraiana Rw1G020250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 968
AccII CGCG 1 cut(s) 79
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 9 cut(s) 21, 138, 294, 504, 605, 615, 677, 758, 810
AclWI GGATC 8 cut(s) 23, 110, 123, 265, 278, 732, 834, 917
AcoI YGGCCR 3 cut(s) 92, 282, 321
AcsI RAATTY 2 cut(s) 646, 847
AcvI CACGTG 1 cut(s) 8
AcyI GRCGYC 2 cut(s) 684, 894
AfaI GTAC 3 cut(s) 183, 354, 734
AfiI CCNNNNNNNGG 3 cut(s) 125, 280, 611
AflII CTTAAG 2 cut(s) 467, 641
AflIII ACRYGT 1 cut(s) 816
AgsI TTSAA 2 cut(s) 104, 878
AhdI GACNNNNNGTC 1 cut(s) 935
AjiI CACGTC 1 cut(s) 819
AluBI AGCT 5 cut(s) 133, 389, 640, 863, 916
AluI AGCT 5 cut(s) 133, 389, 640, 863, 916
Alw26I GTCTC 3 cut(s) 239, 352, 807
AlwI GGATC 8 cut(s) 23, 110, 123, 265, 278, 732, 834, 917
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 3 cut(s) 92, 282, 321
ApeKI GCWGC 1 cut(s) 860
ApoI RAATTY 2 cut(s) 646, 847
ArsI GACNNNNNNTTYG 2 cut(s) 420, 452
AspLEI GCGC 2 cut(s) 81, 521
AsuC2I CCSGG 4 cut(s) 113, 126, 281, 659
AsuHPI GGTGA 1 cut(s) 808
BalI TGGCCA 1 cut(s) 323
BamHI GGATCC 2 cut(s) 115, 270
BbrPI CACGTG 1 cut(s) 8
BbvI GCAGC 1 cut(s) 872
BccI CCATC 2 cut(s) 217, 258
BcgI CGANNNNNNTGC 2 cut(s) 531, 565
BcnI CCSGG 4 cut(s) 113, 126, 281, 659
BcoDI GTCTC 3 cut(s) 239, 352, 807
BfoI RGCGCY 1 cut(s) 522
BfrI CTTAAG 2 cut(s) 467, 641
BisI GCNGC 4 cut(s) 138, 294, 758, 861
BlsI GCNGC 4 cut(s) 139, 295, 759, 862
Bme1390I CCNGG 4 cut(s) 113, 126, 281, 659
BmeRI GACNNNNNGTC 1 cut(s) 935
BmgBI CACGTC 1 cut(s) 819
BmiI GGNNCC 4 cut(s) 117, 262, 272, 672
BmrFI CCNGG 4 cut(s) 113, 126, 281, 659
BmsI GCATC 2 cut(s) 400, 918
BpmI CTGGAG 1 cut(s) 885
BpuMI CCSGG 4 cut(s) 113, 126, 281, 659
BsaAI YACGTR 2 cut(s) 8, 185
BsaBI GATNNNNATC 1 cut(s) 723
BsaHI GRCGYC 2 cut(s) 684, 894
BsaJI CCNNGG 5 cut(s) 95, 124, 225, 256, 461
BsaWI WCCGGW 2 cut(s) 263, 370
BsaXI ACNNNNNCTCC 2 cut(s) 858, 888
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 280, 611
Bse118I RCCGGY 4 cut(s) 170, 667, 706, 896
Bse1I ACTGG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 723
BseAI TCCGGA 1 cut(s) 370
BseDI CCNNGG 5 cut(s) 95, 124, 225, 256, 461
BseGI GGATG 2 cut(s) 209, 246
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 3 cut(s) 125, 280, 611
BseMII CTCAG 1 cut(s) 536
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 872
BseYI CCCAGC 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 3 cut(s) 94, 284, 323
BsiWI CGTACG 1 cut(s) 181
BslI CCNNNNNNNGG 3 cut(s) 125, 280, 611
BsmAI GTCTC 3 cut(s) 239, 352, 807
BsmBI CGTCTC 1 cut(s) 239
BsnI GGCC 3 cut(s) 94, 284, 323
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 9 cut(s) 28, 115, 270, 548, 718, 724, 798, 826, 922
BspACI CCGC 9 cut(s) 21, 138, 294, 504, 605, 615, 677, 758, 810
BspANI GGCC 3 cut(s) 94, 284, 323
BspCNI CTCAG 1 cut(s) 537
BspEI TCCGGA 1 cut(s) 370
BspFNI CGCG 1 cut(s) 79
BspLI GGNNCC 4 cut(s) 117, 262, 272, 672
BspPI GGATC 8 cut(s) 23, 110, 123, 265, 278, 732, 834, 917
BspQI GCTCTTC 1 cut(s) 948
BspTI CTTAAG 2 cut(s) 467, 641
BsrFI RCCGGY 4 cut(s) 170, 667, 706, 896
BsrI ACTGG 1 cut(s) 324
BssAI RCCGGY 4 cut(s) 170, 667, 706, 896
BssECI CCNNGG 5 cut(s) 95, 124, 225, 256, 461
BssMI GATC 9 cut(s) 28, 115, 270, 548, 718, 724, 798, 826, 922
BssNI GRCGYC 2 cut(s) 684, 894
Bst4CI ACNGT 6 cut(s) 305, 337, 492, 587, 737, 789
Bst6I CTCTTC 1 cut(s) 948
BstACI GRCGYC 2 cut(s) 684, 894
BstAFI CTTAAG 2 cut(s) 467, 641
BstAPI GCANNNNNTGC 1 cut(s) 410
BstBAI YACGTR 2 cut(s) 8, 185
BstC8I GCNNGC 4 cut(s) 77, 131, 135, 458
BstDEI CTNAG 1 cut(s) 545
BstDSI CCRYGG 3 cut(s) 225, 256, 461
BstF5I GGATG 2 cut(s) 209, 246
BstFNI CGCG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 2 cut(s) 81, 521
BstKTI GATC 9 cut(s) 31, 118, 273, 551, 721, 727, 801, 829, 925
BstMAI GTCTC 3 cut(s) 239, 352, 807
BstMBI GATC 9 cut(s) 28, 115, 270, 548, 718, 724, 798, 826, 922
BstMWI GCNNNNNNNGC 5 cut(s) 290, 373, 410, 527, 683
BstSCI CCNGG 4 cut(s) 111, 124, 279, 657
BstSNI TACGTA 1 cut(s) 185
BstUI CGCG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 872
BstX2I RGATCY 2 cut(s) 115, 270
BstYI RGATCY 2 cut(s) 115, 270
BsuRI GGCC 3 cut(s) 94, 284, 323
BtgI CCRYGG 3 cut(s) 225, 256, 461
BtgZI GCGATG 1 cut(s) 511
BtrI CACGTC 1 cut(s) 819
BtsCI GGATG 2 cut(s) 209, 246
BtsIMutI CAGTG 3 cut(s) 331, 342, 542
Cac8I GCNNGC 4 cut(s) 77, 131, 135, 458
CfoI GCGC 2 cut(s) 81, 521
Cfr10I RCCGGY 4 cut(s) 170, 667, 706, 896
CseI GACGC 3 cut(s) 410, 692, 902
Csp6I GTAC 3 cut(s) 182, 353, 733
CviAII CATG 2 cut(s) 120, 688
CviQI GTAC 3 cut(s) 182, 353, 733
DdeI CTNAG 1 cut(s) 545
DpnI GATC 9 cut(s) 30, 117, 272, 550, 720, 726, 800, 828, 924
DpnII GATC 9 cut(s) 28, 115, 270, 548, 718, 724, 798, 826, 922
DriI GACNNNNNGTC 1 cut(s) 935
EaeI YGGCCR 3 cut(s) 92, 282, 321
Eam1104I CTCTTC 1 cut(s) 948
Eam1105I GACNNNNNGTC 1 cut(s) 935
EarI CTCTTC 1 cut(s) 948
EciI GGCGGA 1 cut(s) 825
Eco105I TACGTA 1 cut(s) 185
Eco72I CACGTG 1 cut(s) 8
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 2 cut(s) 123, 691
FatI CATG 2 cut(s) 119, 687
FauI CCCGC 1 cut(s) 28
FauNDI CATATG 1 cut(s) 500
Fnu4HI GCNGC 4 cut(s) 138, 294, 758, 861
FokI GGATG 2 cut(s) 196, 233
Fsp4HI GCNGC 4 cut(s) 138, 294, 758, 861
GlaI GCGC 2 cut(s) 80, 520
GluI GCNGC 4 cut(s) 138, 294, 758, 861
GsaI CCCAGC 1 cut(s) 389
GsuI CTGGAG 1 cut(s) 885
HaeII RGCGCY 1 cut(s) 522
HaeIII GGCC 3 cut(s) 94, 284, 323
HgaI GACGC 3 cut(s) 410, 692, 902
HhaI GCGC 2 cut(s) 81, 521
Hin1I GRCGYC 2 cut(s) 684, 894
Hin1II CATG 2 cut(s) 123, 691
Hin6I GCGC 2 cut(s) 79, 519
HinP1I GCGC 2 cut(s) 79, 519
HincII GTYRAC 3 cut(s) 333, 442, 682
HindII GTYRAC 3 cut(s) 333, 442, 682
HinfI GANTC 3 cut(s) 11, 381, 443
HpaI GTTAAC 1 cut(s) 333
HphI GGTGA 1 cut(s) 808
Hpy166II GTNNAC 4 cut(s) 333, 355, 442, 682
Hpy188I TCNGA 2 cut(s) 194, 637
Hpy188III TCNNGA 3 cut(s) 371, 722, 844
Hpy8I GTNNAC 4 cut(s) 333, 355, 442, 682
Hpy99I CGWCG 7 cut(s) 401, 404, 587, 823, 896, 933, 941
HpyCH4III ACNGT 6 cut(s) 305, 337, 492, 587, 737, 789
HpyCH4IV ACGT 4 cut(s) 7, 150, 184, 818
HpyCH4V TGCA 2 cut(s) 75, 860
HpyF10VI GCNNNNNNNGC 5 cut(s) 290, 373, 410, 527, 683
HpyF3I CTNAG 1 cut(s) 545
HpySE526I ACGT 4 cut(s) 7, 150, 184, 818
Hsp92I GRCGYC 2 cut(s) 684, 894
Hsp92II CATG 2 cut(s) 123, 691
HspAI GCGC 2 cut(s) 79, 519
Kpn2I TCCGGA 1 cut(s) 370
KspAI GTTAAC 1 cut(s) 333
Kzo9I GATC 9 cut(s) 28, 115, 270, 548, 718, 724, 798, 826, 922
LguI GCTCTTC 1 cut(s) 948
LmnI GCTCC 3 cut(s) 266, 373, 637
Lsp1109I GCAGC 1 cut(s) 872
LweI GCATC 2 cut(s) 400, 918
MaeII ACGT 4 cut(s) 7, 150, 184, 818
MaeIII GTNAC 8 cut(s) 3, 8, 151, 494, 512, 573, 749, 803
MalI GATC 9 cut(s) 30, 117, 272, 550, 720, 726, 800, 828, 924
MboI GATC 9 cut(s) 28, 115, 270, 548, 718, 724, 798, 826, 922
MboII GAAGA 1 cut(s) 935
MfeI CAATTG 1 cut(s) 536
MflI RGATCY 2 cut(s) 115, 270
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 4 cut(s) 286, 536, 646, 847
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 3 cut(s) 5, 375, 437
MmeI TCCRAC 4 cut(s) 217, 248, 754, 804
MnlI CCTC 5 cut(s) 27, 53, 90, 378, 618
Mox20I TGGCCA 1 cut(s) 323
MroI TCCGGA 1 cut(s) 370
MscI TGGCCA 1 cut(s) 323
MseI TTAA 6 cut(s) 159, 332, 468, 566, 642, 948
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 863
MspCI CTTAAG 2 cut(s) 467, 641
MspR9I CCNGG 4 cut(s) 113, 126, 281, 659
MunI CAATTG 1 cut(s) 536
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 5 cut(s) 290, 373, 410, 527, 683
NciI CCSGG 4 cut(s) 113, 126, 281, 659
NdeI CATATG 1 cut(s) 500
NdeII GATC 9 cut(s) 28, 115, 270, 548, 718, 724, 798, 826, 922
NlaIII CATG 2 cut(s) 123, 691
NlaIV GGNNCC 4 cut(s) 117, 262, 272, 672
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 2 cut(s) 3, 8
PciSI GCTCTTC 1 cut(s) 948
PcsI WCGNNNNNNNCGW 4 cut(s) 171, 190, 588, 918
Pfl23II CGTACG 1 cut(s) 181
PkrI GCNGC 4 cut(s) 139, 295, 759, 862
PleI GAGTC 3 cut(s) 5, 375, 437
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
PpsI GAGTC 3 cut(s) 5, 375, 437
Ppu21I YACGTR 2 cut(s) 8, 185
PsiI TTATAA 1 cut(s) 968
PspCI CACGTG 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 385
PspLI CGTACG 1 cut(s) 181
PspN4I GGNNCC 4 cut(s) 117, 262, 272, 672
PsrI GAACNNNNNNTAC 2 cut(s) 654, 686
PsuI RGATCY 2 cut(s) 115, 270
PvuII CAGCTG 1 cut(s) 863
RsaI GTAC 3 cut(s) 183, 354, 734
RsaNI GTAC 3 cut(s) 182, 353, 733
SapI GCTCTTC 1 cut(s) 948
SaqAI TTAA 6 cut(s) 159, 332, 468, 566, 642, 948
SatI GCNGC 4 cut(s) 138, 294, 758, 861
Sau3AI GATC 9 cut(s) 28, 115, 270, 548, 718, 724, 798, 826, 922
SchI GAGTC 3 cut(s) 5, 375, 437
ScrFI CCNGG 4 cut(s) 113, 126, 281, 659
SfaNI GCATC 2 cut(s) 400, 918
SmlI CTYRAG 2 cut(s) 467, 641
SmoI CTYRAG 2 cut(s) 467, 641
SnaBI TACGTA 1 cut(s) 185
Sse9I AATT 4 cut(s) 286, 536, 646, 847
SsiI CCGC 9 cut(s) 21, 138, 294, 504, 605, 615, 677, 758, 810
StyD4I CCNGG 4 cut(s) 111, 124, 279, 657
TaaI ACNGT 6 cut(s) 305, 337, 492, 587, 737, 789
TaiI ACGT 4 cut(s) 10, 153, 187, 821
TaqI TCGA 5 cut(s) 509, 582, 829, 912, 921
TasI AATT 4 cut(s) 286, 536, 646, 847
TauI GCSGC 3 cut(s) 140, 296, 760
Tru1I TTAA 6 cut(s) 159, 332, 468, 566, 642, 948
Tru9I TTAA 6 cut(s) 159, 332, 468, 566, 642, 948
TscAI CASTG 3 cut(s) 331, 342, 549
TseFI GTSAC 2 cut(s) 3, 8
TseI GCWGC 1 cut(s) 860
Tsp45I GTSAC 2 cut(s) 3, 8
TspGWI ACGGA 2 cut(s) 169, 340
TspRI CASTG 3 cut(s) 331, 342, 549
Vha464I CTTAAG 2 cut(s) 467, 641
XapI RAATTY 2 cut(s) 646, 847
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.