Prupe.2G149700_v2.0.a1

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015105
Physical Location & Seq
Reverse (-)
20511083 .. 20512042
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G149700.1

Sequence Viewer

Length: 960 bp
ATGTCTAAATTCGACCCGTACGCCCACCTCAACATATCCCACGACCCCGCCACCGATACTCTGACCCGCCCCGCCACCACCCCCACGACGCCCACCAACACGGACCCCACCCCGGGGGACCCGGTCGTTTTCAAGGACGTCACGCTCAACCCGGAAACCCGAACCTGGGCCCGAATCTTCCGACCCACTAAACTCCCGTCAAACGACAACACCGTGGCTCGGCTACCCATCATCATCTACTTCCACCACGGCGGCTGGATCCTCCTCTCCGCTGCCGACGCCGCCGCCCACACCAACTGCTCTCAGATCACCTCCGAGGTTCCCGTCATCATCGTCTCCGTCAACTACCGCCTCGCGCCCGAGAGCCGGCTCCCGGCCCAGCACCACGACGCCCTCGACGCGATCCATTGGGTCCGGGCCCAGGCCCAGGACCCGAAGGGCGAGAACTGGATCCGAGACTACGCCGACGTGTCCAGGTGCTACTTGTACGGCTGCGGGTGCGGGGGCAATATCGTCTTTTTCTCCGGGTTGAAAGCGTACCAGCTCCAGCTTGAGCCTCTGAAGATCTCCGGGATTATTATGAACCAGCCCATGTTCGGTGGGCTGCAGAGGACTAATTCGGAGCTGCGATTCGCTACGGACCAGTTGCTTCCGTTGCCTGTGCTGGATCTCATGTGGGACATGGCTTTACCGAAGTCGACGGACAGGAACCATCCGTATTGTAATCCGATGGCGGACGAAGTGCACAGGGATTTGATCAAGCGGCTGGGACGGTGTTTGGTGATTGGGTTTGGTGGGGACCCCATGATCGATCGGCAGCAGGAATTTGTGACGATGCTGGTGGCTTGTGGGGTGAGGGTTGATGCGCGGTTTGATGATCTTGGGTTCCATAACGTTGACTTTGTTGACTCTAGGCGGGCCGCTGCCGTTTTGAACATTGTTAAGGAGTTTATCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

320

Amino Acids

35.69

Weight (kDa)

6.11

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015105)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45610
fragaria_vesca FvH4_7g12520
malus_domestica MD02G1198300.v1.1
prunus_persica Prupe.2G149700_v2.0.a1
pyrus_communis pycom02g16190
rosa_chinensis RchiOBHm_Chr1g0351421
rosa_laevigata RLG00000028408
rosa_multiflora Rmu_sc0000664.1_g000007 Rmu_sc0005320.1_g000004
rosa_roxburghii Rroxscaffold_4G00303840
rosa_rugosa Rorug01G0218000
rosa_samantha Rh1AG232500 Rh1BG203300 Rh1CG217200 Rh1DG230300
rosa_wichuraiana Rw1G020250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 698
AccII CGCG 3 cut(s) 356, 401, 868
AclI AACGTT 1 cut(s) 894
AclWI GGATC 6 cut(s) 253, 266, 397, 445, 458, 675
AcsI RAATTY 2 cut(s) 8, 824
AcuI CTGAAG 1 cut(s) 581
AcyI GRCGYC 4 cut(s) 89, 138, 279, 390
AfaI GTAC 3 cut(s) 20, 488, 539
AflIII ACRYGT 1 cut(s) 468
AgsI TTSAA 3 cut(s) 133, 532, 934
AjiI CACGTC 1 cut(s) 469
AjnI CCWGG 4 cut(s) 164, 420, 426, 473
AluBI AGCT 3 cut(s) 544, 550, 625
AluI AGCT 3 cut(s) 544, 550, 625
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 2 cut(s) 340, 450
Alw44I GTGCAC 1 cut(s) 743
AlwI GGATC 6 cut(s) 253, 266, 397, 445, 458, 675
Ama87I CYCGRG 2 cut(s) 112, 359
AoxI GGCC 5 cut(s) 168, 375, 417, 423, 918
ApaI GGGCCC 2 cut(s) 172, 421
ApaLI GTGCAC 1 cut(s) 743
ApeKI GCWGC 6 cut(s) 272, 492, 604, 625, 817, 923
ApoI RAATTY 2 cut(s) 8, 824
AspLEI GCGC 2 cut(s) 358, 868
AsuC2I CCSGG 8 cut(s) 113, 114, 122, 152, 374, 416, 526, 571
AsuHPI GGTGA 3 cut(s) 301, 793, 865
AvaI CYCGRG 2 cut(s) 112, 359
AvaII GGWCC 6 cut(s) 103, 118, 412, 430, 640, 799
BaeGI GKGCMC 3 cut(s) 172, 421, 747
BamHI GGATCC 2 cut(s) 258, 450
BanII GRGCYC 2 cut(s) 172, 421
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 6 cut(s) 259, 479, 591, 612, 829, 910
BccI CCATC 3 cut(s) 236, 720, 724
BceAI ACGGC 3 cut(s) 265, 505, 911
BciT130I CCWGG 4 cut(s) 166, 422, 428, 475
BclI TGATCA 1 cut(s) 756
BcnI CCSGG 8 cut(s) 113, 114, 122, 152, 374, 416, 526, 571
BcoDI GTCTC 2 cut(s) 340, 450
BfaI CTAG 1 cut(s) 912
BfmI CTRYAG 1 cut(s) 605
BglII AGATCT 1 cut(s) 564
Bme18I GGWCC 6 cut(s) 103, 118, 412, 430, 640, 799
BmeT110I CYCGRG 2 cut(s) 112, 359
BmgBI CACGTC 1 cut(s) 469
BmsI GCATC 2 cut(s) 825, 853
BpmI CTGGAG 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 8 cut(s) 113, 114, 122, 152, 374, 416, 526, 571
Bsa29I ATCGAT 1 cut(s) 810
BsaHI GRCGYC 4 cut(s) 89, 138, 279, 390
BsaJI CCNNGG 9 cut(s) 111, 112, 113, 165, 213, 247, 315, 420, 426
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 2 cut(s) 452, 643
BseBI CCWGG 4 cut(s) 166, 422, 428, 475
BseCI ATCGAT 1 cut(s) 810
BseDI CCNNGG 9 cut(s) 111, 112, 113, 165, 213, 247, 315, 420, 426
BseGI GGATG 1 cut(s) 712
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 2 cut(s) 452, 643
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 3 cut(s) 172, 421, 747
BseXI GCAGC 6 cut(s) 259, 479, 591, 612, 829, 910
BseYI CCCAGC 2 cut(s) 378, 766
Bsh1236I CGCG 3 cut(s) 356, 401, 868
Bsh1285I CGRYCG 2 cut(s) 126, 814
BshFI GGCC 5 cut(s) 170, 377, 419, 425, 920
BshVI ATCGAT 1 cut(s) 810
BsiEI CGRYCG 2 cut(s) 126, 814
BsiHKAI GWGCWC 1 cut(s) 747
BsiHKCI CYCGRG 2 cut(s) 112, 359
BsiSI CCGG 8 cut(s) 113, 122, 152, 367, 374, 415, 525, 570
BsiWI CGTACG 1 cut(s) 18
BslFI GGGAC 4 cut(s) 131, 692, 783, 812
BsmAI GTCTC 2 cut(s) 340, 450
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 4 cut(s) 131, 692, 783, 812
BsnI GGCC 5 cut(s) 170, 377, 419, 425, 920
BsoBI CYCGRG 2 cut(s) 112, 359
Bsp120I GGGCCC 2 cut(s) 168, 417
Bsp1286I GDGCHC 3 cut(s) 172, 421, 747
BspANI GGCC 5 cut(s) 170, 377, 419, 425, 920
BspCNI CTCAG 1 cut(s) 316
BspDI ATCGAT 1 cut(s) 810
BspFNI CGCG 3 cut(s) 356, 401, 868
BspMAI CTGCAG 1 cut(s) 609
BspPI GGATC 6 cut(s) 253, 266, 397, 445, 458, 675
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 2 cut(s) 452, 643
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 9 cut(s) 111, 112, 113, 165, 213, 247, 315, 420, 426
BssNI GRCGYC 4 cut(s) 89, 138, 279, 390
Bst2UI CCWGG 4 cut(s) 166, 422, 428, 475
Bst4CI ACNGT 2 cut(s) 214, 774
BstACI GRCGYC 4 cut(s) 89, 138, 279, 390
BstC8I GCNNGC 2 cut(s) 368, 918
BstDEI CTNAG 1 cut(s) 303
BstDSI CCRYGG 2 cut(s) 213, 247
BstF5I GGATG 1 cut(s) 712
BstFNI CGCG 3 cut(s) 356, 401, 868
BstHHI GCGC 2 cut(s) 358, 868
BstMAI GTCTC 2 cut(s) 340, 450
BstMCI CGRYCG 2 cut(s) 126, 814
BstMWI GCNNNNNNNGC 5 cut(s) 278, 281, 398, 498, 655
BstNI CCWGG 4 cut(s) 166, 422, 428, 475
BstSFI CTRYAG 1 cut(s) 605
BstSLI GKGCMC 3 cut(s) 172, 421, 747
BstUI CGCG 3 cut(s) 356, 401, 868
BstV1I GCAGC 6 cut(s) 259, 479, 591, 612, 829, 910
BstX2I RGATCY 4 cut(s) 258, 450, 564, 667
BstYI RGATCY 4 cut(s) 258, 450, 564, 667
Bsu15I ATCGAT 1 cut(s) 810
BsuRI GGCC 5 cut(s) 170, 377, 419, 425, 920
BsuTUI ATCGAT 1 cut(s) 810
BtgI CCRYGG 2 cut(s) 213, 247
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 712
Cac8I GCNNGC 2 cut(s) 368, 918
CfoI GCGC 2 cut(s) 358, 868
Cfr10I RCCGGY 1 cut(s) 366
Cfr9I CCCGGG 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 810
CseI GACGC 4 cut(s) 97, 287, 398, 407
Csp6I GTAC 3 cut(s) 19, 487, 538
CviAII CATG 4 cut(s) 592, 673, 682, 805
CviQI GTAC 3 cut(s) 19, 487, 538
DdeI CTNAG 1 cut(s) 303
EciI GGCGGA 1 cut(s) 749
Eco24I GRGCYC 2 cut(s) 172, 421
Eco47I GGWCC 6 cut(s) 103, 118, 412, 430, 640, 799
Eco57I CTGAAG 1 cut(s) 581
Eco88I CYCGRG 2 cut(s) 112, 359
EcoO109I RGGNCCY 3 cut(s) 118, 430, 799
EcoRII CCWGG 4 cut(s) 164, 420, 426, 473
EcoT38I GRGCYC 2 cut(s) 172, 421
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 4 cut(s) 595, 676, 685, 808
FaiI YATR 7 cut(s) 35, 581, 593, 674, 683, 806, 891
FaqI GGGAC 4 cut(s) 131, 692, 783, 812
FatI CATG 4 cut(s) 591, 672, 681, 804
FauI CCCGC 6 cut(s) 55, 74, 79, 488, 494, 909
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 1 cut(s) 698
FokI GGATG 1 cut(s) 699
FriOI GRGCYC 2 cut(s) 172, 421
FspBI CTAG 1 cut(s) 912
GlaI GCGC 2 cut(s) 357, 867
GsaI CCCAGC 2 cut(s) 382, 770
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 5 cut(s) 170, 377, 419, 425, 920
HapII CCGG 8 cut(s) 113, 122, 152, 367, 374, 415, 525, 570
HgaI GACGC 4 cut(s) 97, 287, 398, 407
HhaI GCGC 2 cut(s) 358, 868
Hin1I GRCGYC 4 cut(s) 89, 138, 279, 390
Hin1II CATG 4 cut(s) 595, 676, 685, 808
Hin6I GCGC 2 cut(s) 356, 866
HinP1I GCGC 2 cut(s) 356, 866
HincII GTYRAC 4 cut(s) 343, 699, 898, 907
HindII GTYRAC 4 cut(s) 343, 699, 898, 907
HinfI GANTC 3 cut(s) 174, 630, 908
HpaII CCGG 8 cut(s) 113, 122, 152, 367, 374, 415, 525, 570
HphI GGTGA 3 cut(s) 301, 793, 865
Hpy166II GTNNAC 5 cut(s) 343, 699, 745, 898, 907
Hpy188I TCNGA 8 cut(s) 63, 182, 306, 316, 455, 561, 622, 729
Hpy8I GTNNAC 5 cut(s) 343, 699, 745, 898, 907
Hpy99I CGWCG 6 cut(s) 91, 281, 392, 401, 470, 703
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 2 cut(s) 214, 774
HpyCH4IV ACGT 3 cut(s) 138, 468, 894
HpyCH4V TGCA 2 cut(s) 607, 745
HpyF10VI GCNNNNNNNGC 5 cut(s) 278, 281, 398, 498, 655
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 3 cut(s) 138, 468, 894
Hsp92I GRCGYC 4 cut(s) 89, 138, 279, 390
Hsp92II CATG 4 cut(s) 595, 676, 685, 808
HspAI GCGC 2 cut(s) 356, 866
KflI GGGWCCC 2 cut(s) 118, 799
KroI GCCGGC 1 cut(s) 366
KroNI GCCGGC 1 cut(s) 368
Ksp22I TGATCA 1 cut(s) 756
LmnI GCTCC 3 cut(s) 375, 549, 622
Lsp1109I GCAGC 6 cut(s) 259, 479, 591, 612, 829, 910
LweI GCATC 2 cut(s) 825, 853
MaeI CTAG 1 cut(s) 912
MaeII ACGT 3 cut(s) 138, 468, 894
MaeIII GTNAC 2 cut(s) 139, 829
MboII GAAGA 2 cut(s) 169, 574
MflI RGATCY 4 cut(s) 258, 450, 564, 667
MhlI GDGCHC 3 cut(s) 172, 421, 747
MluCI AATT 3 cut(s) 8, 616, 824
MlyI GAGTC 1 cut(s) 902
MmeI TCCRAC 1 cut(s) 205
MroNI GCCGGC 1 cut(s) 366
MseI TTAA 1 cut(s) 942
MspA1I CMGCKG 2 cut(s) 272, 923
MspI CCGG 8 cut(s) 113, 122, 152, 367, 374, 415, 525, 570
MvaI CCWGG 4 cut(s) 166, 422, 428, 475
MvnI CGCG 3 cut(s) 356, 401, 868
MwoI GCNNNNNNNGC 5 cut(s) 278, 281, 398, 498, 655
NaeI GCCGGC 1 cut(s) 368
NciI CCSGG 8 cut(s) 113, 114, 122, 152, 374, 416, 526, 571
NgoMIV GCCGGC 1 cut(s) 366
NlaIII CATG 4 cut(s) 595, 676, 685, 808
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 139, 829
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 393
PdiI GCCGGC 1 cut(s) 368
PfeI GAWTC 2 cut(s) 174, 630
Pfl23II CGTACG 1 cut(s) 18
PflFI GACNNNGTC 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 569
Ple19I CGATCG 1 cut(s) 814
PleI GAGTC 1 cut(s) 902
PpsI GAGTC 1 cut(s) 902
PpuMI RGGWCCY 3 cut(s) 118, 430, 799
Psp1406I AACGTT 1 cut(s) 894
Psp5II RGGWCCY 3 cut(s) 118, 430, 799
Psp6I CCWGG 4 cut(s) 164, 420, 426, 473
PspFI CCCAGC 2 cut(s) 378, 766
PspGI CCWGG 4 cut(s) 164, 420, 426, 473
PspLI CGTACG 1 cut(s) 18
PspOMI GGGCCC 2 cut(s) 168, 417
PspPPI RGGWCCY 3 cut(s) 118, 430, 799
PstI CTGCAG 1 cut(s) 609
PsuI RGATCY 4 cut(s) 258, 450, 564, 667
PsyI GACNNNGTC 1 cut(s) 122
PvuI CGATCG 1 cut(s) 814
RsaI GTAC 3 cut(s) 20, 488, 539
RsaNI GTAC 3 cut(s) 19, 487, 538
SalI GTCGAC 1 cut(s) 697
SaqAI TTAA 1 cut(s) 942
SchI GAGTC 1 cut(s) 902
SduI GDGCHC 3 cut(s) 172, 421, 747
SfaNI GCATC 2 cut(s) 825, 853
SfcI CTRYAG 1 cut(s) 605
SinI GGWCC 6 cut(s) 103, 118, 412, 430, 640, 799
SmaI CCCGGG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 3 cut(s) 8, 616, 824
SspMI CTAG 1 cut(s) 912
TaaI ACNGT 2 cut(s) 214, 774
TaiI ACGT 3 cut(s) 141, 471, 897
TaqI TCGA 4 cut(s) 12, 396, 698, 810
TasI AATT 3 cut(s) 8, 616, 824
TauI GCSGC 5 cut(s) 255, 284, 287, 766, 923
TfiI GAWTC 2 cut(s) 174, 630
Tru1I TTAA 1 cut(s) 942
Tru9I TTAA 1 cut(s) 942
TseFI GTSAC 2 cut(s) 139, 829
TseI GCWGC 6 cut(s) 272, 492, 604, 625, 817, 923
Tsp45I GTSAC 2 cut(s) 139, 829
TspDTI ATGAA 1 cut(s) 596
TspGWI ACGGA 6 cut(s) 116, 328, 642, 653, 705, 716
TspMI CCCGGG 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 122
VneI GTGCAC 1 cut(s) 743
VpaK11BI GGWCC 6 cut(s) 103, 118, 412, 430, 640, 799
XapI RAATTY 2 cut(s) 8, 824
XmaI CCCGGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 698
XspI CTAG 1 cut(s) 912
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.