Rorug01G0218000

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015105
Physical Location & Seq
Reverse (-)
31196094 .. 31198393
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0218000.1

Sequence Viewer

Length: 666 bp
ATGTCGCCGTCGTCGTCTCTCCCCAAACCTCCGACCTCGCCGTCTCCCCTAGACACCTCTGTGATGCCATTGAAGAGTTCTAGTGCCGCCAGCGCACCGCCGAGTTATGCGTCCTCACTTACCCATAGGTCTTACACATCTCATATCATCCACCACTCCAAAAAGATTGATAGTATCATGTCAACAAGGCAGGTAAACGAAAGTGATGCAAGCAGAAGATTGAAGTCAGAGTTTCTAATTCAGTTTGATGGAGTGACATCTAATCCTAATGATCGAGTAATTGTGAATTGGTTTTATTCTGGGGACAAGATCTTGGCCAAGAAACCACCTTATTATAGAACACATGAGGTGCCTGATATGTGGTTTTCTCCGGAGCTTGTATGGGAAATAAGAGAAATCGATGGTCAGTGTTGGCTGGTTAGCTTCAACAATGCCAACTTGTTAGATAATGCCTTTCTTATTTCTAATCATTGTAGTCTGTTAGGGATTTTGATCAAGGAAAATAAGTTCACTTGGATTGTTAATAAAATCTTAGAAACAAACTTTGTTCATCTCCTAGAATTAGTTGAATTAATTCACTTGGATCAATACTGTTTTTATATTCTTGTAGGTGCTACTAATAAGCCTCAAGAACTAGATGACGCAGTTCTTAGAAAGATTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

221

Amino Acids

25.08

Weight (kDa)

6.44

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015105)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45610
fragaria_vesca FvH4_7g12520
malus_domestica MD02G1198300.v1.1
prunus_persica Prupe.2G149700_v2.0.a1
pyrus_communis pycom02g16190
rosa_chinensis RchiOBHm_Chr1g0351421
rosa_laevigata RLG00000028408
rosa_multiflora Rmu_sc0000664.1_g000007 Rmu_sc0005320.1_g000004
rosa_roxburghii Rroxscaffold_4G00303840
rosa_rugosa Rorug01G0218000
rosa_samantha Rh1AG232500 Rh1BG203300 Rh1CG217200 Rh1DG230300
rosa_wichuraiana Rw1G020250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 349
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 2 cut(s) 87, 98
AclWI GGATC 1 cut(s) 591
AcoI YGGCCR 1 cut(s) 315
AgsI TTSAA 4 cut(s) 73, 223, 427, 569
AleI CACNNNNGTG 1 cut(s) 59
AloI GAACNNNNNNTCC 2 cut(s) 491, 523
AluBI AGCT 2 cut(s) 376, 423
AluI AGCT 2 cut(s) 376, 423
Alw26I GTCTC 2 cut(s) 21, 48
AlwI GGATC 1 cut(s) 591
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 1 cut(s) 315
AseI ATTAAT 1 cut(s) 572
Asp700I GAANNNNTTC 1 cut(s) 573
AspLEI GCGC 1 cut(s) 95
BalI TGGCCA 1 cut(s) 317
BanI GGYRCC 1 cut(s) 349
BccI CCATC 2 cut(s) 242, 395
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BclI TGATCA 1 cut(s) 492
BcoDI GTCTC 2 cut(s) 21, 48
BfaI CTAG 4 cut(s) 50, 81, 557, 635
BfuAI ACCTGC 1 cut(s) 181
BglII AGATCT 1 cut(s) 309
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 351
BmsI GCATC 2 cut(s) 54, 196
BpuEI CTTGAG 1 cut(s) 612
Bsa29I ATCGAT 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 491
BsaWI WCCGGW 1 cut(s) 370
Bse8I GATNNNNATC 1 cut(s) 491
BseAI TCCGGA 1 cut(s) 370
BseCI ATCGAT 1 cut(s) 399
BseGI GGATG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 491
BshFI GGCC 1 cut(s) 317
BshNI GGYRCC 1 cut(s) 349
BshVI ATCGAT 1 cut(s) 399
BsiSI CCGG 1 cut(s) 371
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 21, 48
BsmBI CGTCTC 2 cut(s) 21, 48
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 1 cut(s) 317
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 4 cut(s) 271, 309, 492, 583
BspACI CCGC 2 cut(s) 87, 98
BspANI GGCC 1 cut(s) 317
BspDI ATCGAT 1 cut(s) 399
BspEI TCCGGA 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 351
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 1 cut(s) 591
BspT107I GGYRCC 1 cut(s) 349
BssMI GATC 4 cut(s) 271, 309, 492, 583
Bst4CI ACNGT 1 cut(s) 593
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 91, 211
BstDEI CTNAG 2 cut(s) 532, 650
BstF5I GGATG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 4 cut(s) 274, 312, 495, 586
BstMAI GTCTC 2 cut(s) 21, 48
BstMBI GATC 4 cut(s) 271, 309, 492, 583
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
Bsu15I ATCGAT 1 cut(s) 399
BsuRI GGCC 1 cut(s) 317
BsuTUI ATCGAT 1 cut(s) 399
BtsCI GGATG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 413
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 91, 211
CfoI GCGC 1 cut(s) 95
ClaI ATCGAT 1 cut(s) 399
CseI GACGC 2 cut(s) 99, 650
CviAII CATG 2 cut(s) 178, 344
CviJI RGCY 5 cut(s) 317, 376, 415, 423, 625
CviKI_1 RGCY 5 cut(s) 317, 376, 415, 423, 625
DdeI CTNAG 2 cut(s) 532, 650
DpnI GATC 4 cut(s) 273, 311, 494, 585
DpnII GATC 4 cut(s) 271, 309, 492, 583
DrdI GACNNNNNNGTC 1 cut(s) 40
DseDI GACNNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Esp3I CGTCTC 2 cut(s) 21, 48
FaeI CATG 2 cut(s) 181, 347
FaiI YATR 9 cut(s) 108, 126, 144, 179, 336, 345, 359, 382, 600
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 177, 343
FbaI TGATCA 1 cut(s) 492
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 4 cut(s) 50, 81, 557, 635
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 317
HapII CCGG 1 cut(s) 371
HgaI GACGC 2 cut(s) 99, 650
HhaI GCGC 1 cut(s) 95
Hin1II CATG 2 cut(s) 181, 347
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HpaII CCGG 1 cut(s) 371
Hpy166II GTNNAC 3 cut(s) 183, 196, 510
Hpy188I TCNGA 2 cut(s) 33, 229
Hpy188III TCNNGA 2 cut(s) 371, 629
Hpy8I GTNNAC 3 cut(s) 183, 196, 510
Hpy99I CGWCG 2 cut(s) 13, 16
HpyCH4III ACNGT 1 cut(s) 593
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 532, 650
Hsp92II CATG 2 cut(s) 181, 347
HspAI GCGC 1 cut(s) 93
Kpn2I TCCGGA 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 4 cut(s) 271, 309, 492, 583
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 6 cut(s) 103, 176, 285, 366, 384, 401
LweI GCATC 2 cut(s) 54, 196
MaeI CTAG 4 cut(s) 50, 81, 557, 635
MaeIII GTNAC 1 cut(s) 253
MalI GATC 4 cut(s) 273, 311, 494, 585
MboI GATC 4 cut(s) 271, 309, 492, 583
MboII GAAGA 2 cut(s) 85, 228
MflI RGATCY 1 cut(s) 309
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 6 cut(s) 237, 279, 286, 560, 569, 573
MluNI TGGCCA 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 6 cut(s) 39, 46, 67, 124, 340, 636
Mox20I TGGCCA 1 cut(s) 317
MroI TCCGGA 1 cut(s) 370
MroXI GAANNNNTTC 1 cut(s) 573
MscI TGGCCA 1 cut(s) 317
MseI TTAA 2 cut(s) 522, 572
MslI CAYNNNNRTG 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 317
MspI CCGG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 4 cut(s) 271, 309, 492, 583
NlaIII CATG 2 cut(s) 181, 347
NlaIV GGNNCC 1 cut(s) 351
NmeAIII GCCGAG 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 573
PkrI GCNGC 1 cut(s) 88
PshBI ATTAAT 1 cut(s) 572
PspN4I GGNNCC 1 cut(s) 351
PsuI RGATCY 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 2 cut(s) 522, 572
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 4 cut(s) 271, 309, 492, 583
SfaNI GCATC 2 cut(s) 54, 196
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 627
SmoI CTYRAG 1 cut(s) 627
Sse9I AATT 6 cut(s) 237, 279, 286, 560, 569, 573
SsiI CCGC 2 cut(s) 87, 98
SspMI CTAG 4 cut(s) 50, 81, 557, 635
TaaI ACNGT 1 cut(s) 593
TaqI TCGA 2 cut(s) 274, 399
TasI AATT 6 cut(s) 237, 279, 286, 560, 569, 573
TauI GCSGC 1 cut(s) 89
Tru1I TTAA 2 cut(s) 522, 572
Tru9I TTAA 2 cut(s) 522, 572
TscAI CASTG 1 cut(s) 413
TseFI GTSAC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 539
TspRI CASTG 1 cut(s) 413
VspI ATTAAT 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 4 cut(s) 50, 81, 557, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.