AT2G46040

domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
18935236 .. 18938447
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46040.3

Sequence Viewer

Length: 1689 bp
ATGGCGGGTTGGTCGATGGTAGCCGACGAGGATGCCGTCGATTATAGCAAGACTCCAAAGAGTCTCGATGCGAATAGGTCTCCTGAAAGCGTTAACCCAGAATCTACAGGGTTTGAAAAGAAGATTAAAGAACTCATCTCCTTGTTCCGACCTTTGCTTGATTCTTTTCTCGCTGAGTTTTGTTCGGCGGATGGTTTTCTACCTCTTCCTGCGATGACCGGTGAAGGAAGGACCGTTGATTTGTTCAATCTCTTTTTGAACGTGACTCACAAAGGCGGATTCGATGCAGTTTCTGAGAATGGGTCATGGGATGAAGTTGTTCAAGAGTCTGGATTAGAGTCTTATGACTCTGCATCTGCGAAATTGATCTATGTTAAGTATCTTGATGCATTTGGTCGATGGTTGAACAGAGTTGTTGCAGGAGATACTGATGTTAGTAGCGTGGAGTTGTCTGGAATCTCTGATGCTTTGGTGGCTAGACTTAACGGTTTTTTATCTGAAGTGAAAAAGAAATATGAGCTGAGGAAAGGTAGACCTGCAAAGGAGTTAGGAGCAGAGCTTAAATGGTTTATTTCGAAAACGAAGAGAAGATATGATAAGCACCATGTTGGCAAAGAGTCTGCTTCGAATGATGCTGTGAAAGAGTTTCAGGGATCAAAATTGGCGGAGAGGAGACTGGAGCAGATAATGATCCTTGAATCAGTTACTCAGGAATGCTCTTCTCCTGGGAAGAGAAAACGAGAATGTCCTTTGGAGACATTGAAATGGTTAAGCGATGTTGCTAAGGATCCATGTGACCCATCTCTTGGTATTGTGCCAGATAGATCAGAGTGGGTATCTTATGGAAGTGAAGAGCCATGGAAACAACTTCTTCTGTTTAGGGCCTCAAGAACAAACAATGATTCAGCTTGTGAAAAGACTTGGCAGAAAGTCCAGAAGATGCACCCATGCCTGTATGATGATAGTGCTGGAGCTAGTTACAATCTAAGAGAGAGACTGAGTTACGAGGATTACAAGAGGGGAAAGACTGGGAATGGCTCGGATATAGGCAGTTCAGATGAGGAGGATAGACCATGTGCTCTAGTTGGGTCAAAGTTTCAAGCTAAAGTACCGGAGTGGACTGGCATAACCCCTGAAAGTGATTCAAAGTGGTTGGGCACTCGGATCTGGCCACTGACCAAAGAACAAACCAAGGCTAATCTTCTTATCGAAAGAGATCGTATTGGAAAAGGAAGACAAGATCCTTGTGGCTGCCATAATCCAGGATCTATTGAATGTGTCAAGTTTCATATCACTGCAAAACGGGATAAACTGAAACTTGAACTTGGTCCAGCTTTCTACATGTGGTGTTTTGATGTCATGGGTGAATGTACTCTCCAGTATTGGACAGACTTAGAACTGAAGAAGATAAAGTCTTTGATGAGTTCTCCACCGTCACTTAGCCCAGCCTTCATCCATCAGGCCAAGATGATTCTTCCTTCGAAGAGCAGAGGAAAAATTGTGAGCTACTTCTACAACGTGACCCTTTTGCAGTACAGAGCAAGTCAGAGTAGAATAACACCTCACGATATAGACAGTGATACTGATCAAATATTCCTCCGCGCAACAGAGAATGAAAATCCAGCCCCCGAAGCAAACACATTTCAGAAACCCGCCCTGCTTTCGCCTAATAAAAAAAGATGTCGATAG

Protein Analysis

562

Amino Acids

63.31

Weight (kDa)

7.47

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 57 - 131 3.7e-11 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 544
AccB7I CCANNNNNTGG 1 cut(s) 806
AccI GTMKAC 1 cut(s) 532
AccII CGCG 1 cut(s) 1602
AciI CCGC 6 cut(s) 5, 188, 276, 665, 1600, 1653
AclWI GGATC 7 cut(s) 661, 685, 782, 795, 1172, 1235, 1273
AcoI YGGCCR 1 cut(s) 1169
AcuI CTGAAG 2 cut(s) 519, 1421
AfaI GTAC 3 cut(s) 1110, 1372, 1535
AfiI CCNNNNNNNGG 1 cut(s) 806
AflIII ACRYGT 1 cut(s) 1341
AgeI ACCGGT 1 cut(s) 218
AjnI CCWGG 2 cut(s) 724, 1261
AluBI AGCT 7 cut(s) 520, 559, 908, 974, 1103, 1334, 1506
AluI AGCT 7 cut(s) 520, 559, 908, 974, 1103, 1334, 1506
Alw21I GWGCWC 1 cut(s) 1081
Alw26I GTCTC 5 cut(s) 68, 84, 667, 749, 988
AlwI GGATC 7 cut(s) 661, 685, 782, 795, 1172, 1235, 1273
AlwNI CAGNNNCTG 1 cut(s) 293
AoxI GGCC 3 cut(s) 882, 1169, 1461
ApeKI GCWGC 1 cut(s) 1251
ArsI GACNNNNNNTTYG 2 cut(s) 223, 255
AsiGI ACCGGT 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 318
AspLEI GCGC 1 cut(s) 1604
AspS9I GGNCC 3 cut(s) 231, 882, 1328
AsuHPI GGTGA 2 cut(s) 233, 1376
AsuII TTCGAA 3 cut(s) 575, 626, 1481
AvaII GGWCC 2 cut(s) 231, 1328
BaeGI GKGCMC 1 cut(s) 1160
BaeI ACNNNNGTAYC 2 cut(s) 417, 450
BalI TGGCCA 1 cut(s) 1171
BamHI GGATCC 1 cut(s) 787
BbsI GAAGAC 1 cut(s) 1240
Bbv12I GWGCWC 1 cut(s) 1081
BbvCI CCTCAGC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 1238
BccI CCATC 5 cut(s) 10, 185, 393, 808, 1464
BceAI ACGGC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 2 cut(s) 726, 1263
BclI TGATCA 1 cut(s) 1585
BcoDI GTCTC 5 cut(s) 68, 84, 667, 749, 988
BfaI CTAG 3 cut(s) 477, 975, 1082
BfmI CTRYAG 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 544
BisI GCNGC 1 cut(s) 1252
BlsI GCNGC 1 cut(s) 1253
Bme1390I CCNGG 2 cut(s) 726, 1263
Bme18I GGWCC 2 cut(s) 231, 1328
BmgT120I GGNCC 3 cut(s) 231, 882, 1328
BmiI GGNNCC 1 cut(s) 789
BmrFI CCNGG 2 cut(s) 726, 1263
BmrI ACTGGG 1 cut(s) 1038
BmsI GCATC 8 cut(s) 22, 58, 274, 362, 376, 454, 622, 930
BmuI ACTGGG 1 cut(s) 1038
BpiI GAAGAC 1 cut(s) 1240
BpmI CTGGAG 3 cut(s) 698, 990, 1361
Bpu10I CCTNAGC 2 cut(s) 521, 783
Bpu14I TTCGAA 3 cut(s) 575, 626, 1481
BpuEI CTTGAG 1 cut(s) 871
BsaBI GATNNNNATC 2 cut(s) 689, 1584
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 3 cut(s) 725, 857, 1191
BsaWI WCCGGW 2 cut(s) 218, 1111
Bsc4I CCNNNNNNNGG 1 cut(s) 806
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 4 cut(s) 681, 1033, 1126, 1378
Bse8I GATNNNNATC 2 cut(s) 689, 1584
BseBI CCWGG 2 cut(s) 726, 1263
BseDI CCNNGG 3 cut(s) 725, 857, 1191
BseGI GGATG 4 cut(s) 37, 196, 316, 1452
BseJI GATNNNNATC 2 cut(s) 689, 1584
BseLI CCNNNNNNNGG 1 cut(s) 806
BseMII CTCAG 5 cut(s) 165, 285, 512, 722, 989
BseNI ACTGG 4 cut(s) 681, 1033, 1126, 1378
BseRI GAGGAG 2 cut(s) 685, 1076
BseSI GKGCMC 1 cut(s) 1160
BseXI GCAGC 1 cut(s) 1238
BseYI CCCAGC 1 cut(s) 1444
Bsh1236I CGCG 1 cut(s) 1602
BshFI GGCC 3 cut(s) 884, 1171, 1463
BshTI ACCGGT 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 1081
BsiSI CCGG 2 cut(s) 219, 1112
BslI CCNNNNNNNGG 1 cut(s) 806
BsmAI GTCTC 5 cut(s) 68, 84, 667, 749, 988
BsmI GAATGC 1 cut(s) 719
BsnI GGCC 3 cut(s) 884, 1171, 1463
Bso31I GGTCTC 1 cut(s) 84
Bsp119I TTCGAA 3 cut(s) 575, 626, 1481
Bsp1286I GDGCHC 2 cut(s) 1081, 1160
Bsp19I CCATGG 1 cut(s) 857
BspACI CCGC 6 cut(s) 5, 188, 276, 665, 1600, 1653
BspANI GGCC 3 cut(s) 884, 1171, 1463
BspCNI CTCAG 5 cut(s) 166, 286, 513, 721, 990
BspFNI CGCG 1 cut(s) 1602
BspLI GGNNCC 1 cut(s) 789
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 7 cut(s) 661, 685, 782, 795, 1172, 1235, 1273
BspQI GCTCTTC 3 cut(s) 724, 846, 1478
BspT104I TTCGAA 3 cut(s) 575, 626, 1481
BspTNI GGTCTC 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 4 cut(s) 681, 1033, 1126, 1378
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 725, 857, 1191
BssT1I CCWWGG 2 cut(s) 857, 1191
Bst2UI CCWGG 2 cut(s) 726, 1263
Bst4CI ACNGT 4 cut(s) 235, 488, 1434, 1577
Bst6I CTCTTC 6 cut(s) 210, 578, 724, 725, 846, 1478
BstBI TTCGAA 3 cut(s) 575, 626, 1481
BstDEI CTNAG 9 cut(s) 174, 294, 521, 708, 783, 986, 998, 1393, 1439
BstDSI CCRYGG 1 cut(s) 857
BstF5I GGATG 4 cut(s) 37, 196, 316, 1452
BstFNI CGCG 1 cut(s) 1602
BstHHI GCGC 1 cut(s) 1604
BstMAI GTCTC 5 cut(s) 68, 84, 667, 749, 988
BstMWI GCNNNNNNNGC 2 cut(s) 473, 1631
BstNI CCWGG 2 cut(s) 726, 1263
BstNSI RCATGY 1 cut(s) 1345
BstSCI CCNGG 2 cut(s) 724, 1261
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 1160
BstUI CGCG 1 cut(s) 1602
BstV1I GCAGC 1 cut(s) 1238
BstV2I GAAGAC 1 cut(s) 1240
BstX2I RGATCY 4 cut(s) 787, 1164, 1240, 1265
BstYI RGATCY 4 cut(s) 787, 1164, 1240, 1265
BsuRI GGCC 3 cut(s) 884, 1171, 1463
BtgI CCRYGG 1 cut(s) 857
BtgZI GCGATG 2 cut(s) 227, 789
BtsCI GGATG 4 cut(s) 37, 196, 316, 1452
BtsI GCAGTG 1 cut(s) 1293
BtsIMutI CAGTG 3 cut(s) 1172, 1293, 1582
BveI ACCTGC 1 cut(s) 544
CaiI CAGNNNCTG 1 cut(s) 293
CfoI GCGC 1 cut(s) 1604
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 3 cut(s) 231, 882, 1328
Csp6I GTAC 3 cut(s) 1109, 1371, 1534
CspAI ACCGGT 1 cut(s) 218
CviAII CATG 8 cut(s) 306, 605, 792, 858, 948, 1074, 1342, 1360
CviQI GTAC 3 cut(s) 1109, 1371, 1534
DdeI CTNAG 9 cut(s) 174, 294, 521, 708, 783, 986, 998, 1393, 1439
EaeI YGGCCR 1 cut(s) 1169
Eam1104I CTCTTC 6 cut(s) 210, 578, 724, 725, 846, 1478
EarI CTCTTC 6 cut(s) 210, 578, 724, 725, 846, 1478
EciI GGCGGA 3 cut(s) 203, 291, 680
Eco130I CCWWGG 2 cut(s) 857, 1191
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 231, 1328
Eco57I CTGAAG 2 cut(s) 519, 1421
EcoO109I RGGNCCY 1 cut(s) 882
EcoRII CCWGG 2 cut(s) 724, 1261
EcoT14I CCWWGG 2 cut(s) 857, 1191
EcoT22I ATGCAT 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 857, 1191
FaeI CATG 8 cut(s) 309, 608, 795, 861, 951, 1077, 1345, 1363
FatI CATG 8 cut(s) 305, 604, 791, 857, 947, 1073, 1341, 1359
FauI CCCGC 1 cut(s) 1660
FbaI TGATCA 1 cut(s) 1585
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 1 cut(s) 1252
FokI GGATG 4 cut(s) 44, 203, 323, 1439
Fsp4HI GCNGC 1 cut(s) 1252
FspBI CTAG 3 cut(s) 477, 975, 1082
GlaI GCGC 1 cut(s) 1603
GluI GCNGC 1 cut(s) 1252
GsaI CCCAGC 1 cut(s) 1448
GsuI CTGGAG 3 cut(s) 698, 990, 1361
HaeIII GGCC 3 cut(s) 884, 1171, 1463
HapII CCGG 2 cut(s) 219, 1112
HhaI GCGC 1 cut(s) 1604
Hin1II CATG 8 cut(s) 309, 608, 795, 861, 951, 1077, 1345, 1363
Hin6I GCGC 1 cut(s) 1602
HinP1I GCGC 1 cut(s) 1602
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 2 cut(s) 219, 1112
HphI GGTGA 2 cut(s) 233, 1376
Hpy166II GTNNAC 3 cut(s) 94, 533, 1119
Hpy8I GTNNAC 3 cut(s) 94, 533, 1119
Hpy99I CGWCG 2 cut(s) 29, 41
HpyAV CCTTC 4 cut(s) 218, 222, 1459, 1488
HpyCH4III ACNGT 4 cut(s) 235, 488, 1434, 1577
HpyCH4IV ACGT 2 cut(s) 261, 1518
HpyCH4V TGCA 8 cut(s) 287, 353, 389, 419, 539, 943, 1298, 1531
HpyF10VI GCNNNNNNNGC 2 cut(s) 473, 1631
HpyF3I CTNAG 9 cut(s) 174, 294, 521, 708, 783, 986, 998, 1393, 1439
HpySE526I ACGT 2 cut(s) 261, 1518
Hsp92II CATG 8 cut(s) 309, 608, 795, 861, 951, 1077, 1345, 1363
HspAI GCGC 1 cut(s) 1602
Ksp22I TGATCA 1 cut(s) 1585
KspAI GTTAAC 1 cut(s) 94
LguI GCTCTTC 3 cut(s) 724, 846, 1478
LmnI GCTCC 3 cut(s) 551, 679, 971
Lsp1109I GCAGC 1 cut(s) 1238
LweI GCATC 8 cut(s) 22, 58, 274, 362, 376, 454, 622, 930
MaeI CTAG 3 cut(s) 477, 975, 1082
MaeII ACGT 2 cut(s) 261, 1518
MaeIII GTNAC 7 cut(s) 262, 703, 794, 977, 1001, 1434, 1519
MflI RGATCY 4 cut(s) 787, 1164, 1240, 1265
MhlI GDGCHC 2 cut(s) 1081, 1160
MlsI TGGCCA 1 cut(s) 1171
MluCI AATT 3 cut(s) 362, 659, 1497
MluNI TGGCCA 1 cut(s) 1171
MlyI GAGTC 7 cut(s) 46, 70, 259, 335, 341, 347, 626
MmeI TCCRAC 1 cut(s) 172
Mox20I TGGCCA 1 cut(s) 1171
Mph1103I ATGCAT 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 318
MscI TGGCCA 1 cut(s) 1171
MseI TTAA 6 cut(s) 93, 126, 375, 483, 561, 770
MslI CAYNNNNRTG 1 cut(s) 763
Msp20I TGGCCA 1 cut(s) 1171
MspI CCGG 2 cut(s) 219, 1112
MspR9I CCNGG 2 cut(s) 726, 1263
Mva1269I GAATGC 1 cut(s) 719
MvaI CCWGG 2 cut(s) 726, 1263
MvnI CGCG 1 cut(s) 1602
MwoI GCNNNNNNNGC 2 cut(s) 473, 1631
NcoI CCATGG 1 cut(s) 857
NlaIII CATG 8 cut(s) 309, 608, 795, 861, 951, 1077, 1345, 1363
NlaIV GGNNCC 1 cut(s) 789
NmuCI GTSAC 4 cut(s) 262, 794, 1434, 1519
NsiI ATGCAT 1 cut(s) 391
NspI RCATGY 1 cut(s) 1345
NspV TTCGAA 3 cut(s) 575, 626, 1481
PciI ACATGT 1 cut(s) 1341
PciSI GCTCTTC 3 cut(s) 724, 846, 1478
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 719
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 8 cut(s) 101, 161, 279, 456, 698, 902, 1142, 1471
PflMI CCANNNNNTGG 1 cut(s) 806
PfoI TCCNGGA 1 cut(s) 1261
PinAI ACCGGT 1 cut(s) 218
PkrI GCNGC 1 cut(s) 1253
PleI GAGTC 7 cut(s) 46, 69, 259, 334, 341, 346, 625
PpsI GAGTC 7 cut(s) 46, 69, 259, 334, 341, 346, 625
PscI ACATGT 1 cut(s) 1341
Psp6I CCWGG 2 cut(s) 724, 1261
PspFI CCCAGC 1 cut(s) 1444
PspGI CCWGG 2 cut(s) 724, 1261
PspN4I GGNNCC 1 cut(s) 789
PspPI GGNCC 3 cut(s) 231, 882, 1328
PstNI CAGNNNCTG 1 cut(s) 293
PsuI RGATCY 4 cut(s) 787, 1164, 1240, 1265
RsaI GTAC 3 cut(s) 1110, 1372, 1535
RsaNI GTAC 3 cut(s) 1109, 1371, 1534
RseI CAYNNNNRTG 1 cut(s) 763
SapI GCTCTTC 3 cut(s) 724, 846, 1478
SaqAI TTAA 6 cut(s) 93, 126, 375, 483, 561, 770
SatI GCNGC 1 cut(s) 1252
Sau96I GGNCC 3 cut(s) 231, 882, 1328
SchI GAGTC 7 cut(s) 46, 70, 259, 335, 341, 347, 626
ScrFI CCNGG 2 cut(s) 726, 1263
SduI GDGCHC 2 cut(s) 1081, 1160
SfaNI GCATC 8 cut(s) 22, 58, 274, 362, 376, 454, 622, 930
SfcI CTRYAG 1 cut(s) 105
SfuI TTCGAA 3 cut(s) 575, 626, 1481
SinI GGWCC 2 cut(s) 231, 1328
SmiMI CAYNNNNRTG 1 cut(s) 763
SmlI CTYRAG 1 cut(s) 886
SmoI CTYRAG 1 cut(s) 886
Sse9I AATT 3 cut(s) 362, 659, 1497
SsiI CCGC 6 cut(s) 5, 188, 276, 665, 1600, 1653
SspI AATATT 1 cut(s) 1593
SspMI CTAG 3 cut(s) 477, 975, 1082
StyD4I CCNGG 2 cut(s) 724, 1261
StyI CCWWGG 2 cut(s) 857, 1191
TaaI ACNGT 4 cut(s) 235, 488, 1434, 1577
TaiI ACGT 2 cut(s) 264, 1521
TasI AATT 3 cut(s) 362, 659, 1497
TatI WGTACW 2 cut(s) 1370, 1533
TfiI GAWTC 8 cut(s) 101, 161, 279, 456, 698, 902, 1142, 1471
Tru1I TTAA 6 cut(s) 93, 126, 375, 483, 561, 770
Tru9I TTAA 6 cut(s) 93, 126, 375, 483, 561, 770
TscAI CASTG 3 cut(s) 1179, 1300, 1582
TseFI GTSAC 4 cut(s) 262, 794, 1434, 1519
TseI GCWGC 1 cut(s) 1251
Tsp45I GTSAC 4 cut(s) 262, 794, 1434, 1519
TspDTI ATGAA 4 cut(s) 327, 1277, 1441, 1629
TspRI CASTG 3 cut(s) 1179, 1300, 1582
Van91I CCANNNNNTGG 1 cut(s) 806
VpaK11BI GGWCC 2 cut(s) 231, 1328
XceI RCATGY 1 cut(s) 1345
XmiI GTMKAC 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 3 cut(s) 477, 975, 1082
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.