Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000517.1

Orthogroup ID

OG0006643

Physical Location & Seq

Genomic Coordinates Reverse (-)

54692 .. 55837

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000517.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atggcagggtggtcggtgatagctgatgggtctgttgtagattgcgagactaagaaggaggaagagccggactgcttctcggaagcttcaaaacgcagcgtttcggggttgccggacaagctccggtgctggttcgatcagtttcttggggtttttctcaaggaaatatgtacccgagactcgctccggcctctgcctccgatgctcggaaatgggcagagggtggatttgtttaagctgttttgggctgtgagaaagaagggcgggtttgattgtgtttcggattccggggtttgggattttgttgcaggggagtgtgggttgggtttgagtttaggtggggctgtgaagttggtttacactaagtatttgtacctgcttgagaggcttttggagaataaggatttggaatggagtttgggtagtagtggcgttgatttggggaagcagttgatggatttgcaggatgagtttactgggttgtttccggaagttgctgatcggaaggtgaaagatagggcggagtatttgaatgcggagatgtccccgaagagtttgaaggacagtaatgaggtggccggtgtgggagaaaagtgtggtgggatgaagaagagtgttgataatgtggggttggagtgggatttggggactgtggagaaggtttcgaataatgtggctgggaatgtggatgtgatgaacagtatggaggatgctgggaagttgagtaacaatgaagaggtgaagagtgaggtggtggaatcgggtgcagggaagaaacttaatgatgacgacgacgattatatagatgtaatgatcgtgaatccagccactatggaagtgagttcttgtcgtaaaaggaagcgagagtccttttgcggaatgttgaattggattagaaagattgcagcagatccttgtgatccgtcagttggttcgataccagaaaggtcaaagtggaagtcctttgggaaggaagagaactggaagcgggttttgggtgctcgagaggccatgtttctgaagaggaatgctgattcagttgcagaaccgtttaactttcaatctcagagagaggcagagattggagaagcagctaaggacaatgtccgaatcaggagcctgttcattctcatccccggccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID Myb_DNA-binding

Protein Analysis

381

Amino Acids

42.28

Weight (kDa)

4.97

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46040 AT2G46040 AT2G46040
fragaria_vesca	FvH4_7g14740 FvH4_7g14740 FvH4_7g14740
malus_domestica	MD01G1066000.v1.1 MD07G1134600.v1.1
prunus_persica	Prupe.2G173100_v2.0.a1 Prupe.2G173100_v2.0.a1
pyrus_communis	pycom01g09560 pycom07g13190
rosa_chinensis	RchiOBHm_Chr1g0356691
rosa_laevigata	RLG00000028087
rosa_multiflora	Rmu_co8484219.1_g000001 Rmu_sc0000517.1_g000014 Rmu_sc0000517.1_g000015
rosa_roxburghii	Rroxscaffold_4G00299410
rosa_rugosa	Rorug01G0250600 Rorug01G0250600 Rorug01G0250700
rosa_samantha	Rh1AG264600 Rh1BG232100 Rh1CG248200 Rh1DG259700
rosa_wichuraiana	Rw1G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	384
AccIII	TCCGGA	1 cut(s)	487
AciI	CCGC	5 cut(s)	264, 521, 536, 876, 988
AclWI	GGATC	2 cut(s)	905, 914
AcoI	YGGCCR	2 cut(s)	576, 1138
AcuI	CTGAAG	1 cut(s)	1040
AfaI	GTAC	2 cut(s)	172, 374
AfiI	CCNNNNNNNGG	3 cut(s)	206, 294, 929
AgsI	TTSAA	5 cut(s)	90, 532, 559, 886, 1061
AjuI	GAANNNNNNNTTGG	6 cut(s)	389, 421, 871, 903, 977, 1009
AluBI	AGCT	5 cut(s)	23, 86, 121, 238, 1094
AluI	AGCT	5 cut(s)	23, 86, 121, 238, 1094
Alw21I	GWGCWC	1 cut(s)	1003
Alw26I	GTCTC	2 cut(s)	41, 171
AlwI	GGATC	2 cut(s)	905, 914
Ama87I	CYCGRG	2 cut(s)	174, 1002
Aor13HI	TCCGGA	1 cut(s)	487
AoxI	GGCC	4 cut(s)	188, 576, 1008, 1138
ApeKI	GCWGC	3 cut(s)	96, 905, 1091
ArsI	GACNNNNNNTTYG	2 cut(s)	944, 976
AsuC2I	CCSGG	2 cut(s)	289, 1137
AsuHPI	GGTGA	3 cut(s)	28, 520, 751
AsuII	TTCGAA	1 cut(s)	665
AvaI	CYCGRG	2 cut(s)	174, 1002
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
Bbv12I	GWGCWC	1 cut(s)	1003
BbvI	GCAGC	3 cut(s)	108, 917, 1103
BccI	CCATC	2 cut(s)	20, 448
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcnI	CCSGG	2 cut(s)	289, 1137
BcoDI	GTCTC	2 cut(s)	41, 171
BfuAI	ACCTGC	1 cut(s)	384
BisI	GCNGC	3 cut(s)	97, 906, 1092
BlsI	GCNGC	3 cut(s)	98, 907, 1093
Bme1390I	CCNGG	2 cut(s)	289, 1137
BmeT110I	CYCGRG	2 cut(s)	174, 1002
BmiI	GGNNCC	1 cut(s)	1118
BmrFI	CCNGG	2 cut(s)	289, 1137
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	2 cut(s)	192, 700
BmuI	ACTGGG	1 cut(s)	486
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
Bpu10I	CCTNAGC	1 cut(s)	1095
Bpu14I	TTCGAA	1 cut(s)	665
BpuEI	CTTGAG	2 cut(s)	143, 401
BpuMI	CCSGG	2 cut(s)	289, 1137
BsaJI	CCNNGG	2 cut(s)	288, 1135
BsaWI	WCCGGW	2 cut(s)	123, 487
BsaXI	ACNNNNNCTCC	4 cut(s)	305, 335, 406, 436
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 294, 929
Bse118I	RCCGGY	1 cut(s)	578
Bse1I	ACTGG	3 cut(s)	481, 986, 1141
BseAI	TCCGGA	1 cut(s)	487
BseDI	CCNNGG	2 cut(s)	288, 1135
BseGI	GGATG	5 cut(s)	472, 609, 694, 715, 1131
BseLI	CCNNNNNNNGG	3 cut(s)	206, 294, 929
BseMII	CTCAG	1 cut(s)	1079
BseNI	ACTGG	3 cut(s)	481, 986, 1141
BseXI	GCAGC	3 cut(s)	108, 917, 1103
BseYI	CCCAGC	2 cut(s)	677, 713
BsgI	GTGCAG	1 cut(s)	786
BshFI	GGCC	4 cut(s)	190, 578, 1010, 1140
BsiHKAI	GWGCWC	1 cut(s)	1003
BsiHKCI	CYCGRG	2 cut(s)	174, 1002
BsiSI	CCGG	8 cut(s)	68, 113, 124, 187, 288, 488, 579, 1137
BslFI	GGGAC	2 cut(s)	529, 661
BslI	CCNNNNNNNGG	3 cut(s)	206, 294, 929
BsmAI	GTCTC	2 cut(s)	41, 171
BsmFI	GGGAC	2 cut(s)	529, 661
BsmI	GAATGC	2 cut(s)	538, 1033
BsnI	GGCC	4 cut(s)	190, 578, 1010, 1140
BsoBI	CYCGRG	2 cut(s)	174, 1002
Bsp119I	TTCGAA	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	1003
Bsp13I	TCCGGA	1 cut(s)	487
Bsp143I	GATC	5 cut(s)	136, 499, 813, 910, 919
BspACI	CCGC	5 cut(s)	264, 521, 536, 876, 988
BspANI	GGCC	4 cut(s)	190, 578, 1010, 1140
BspCNI	CTCAG	1 cut(s)	1078
BspEI	TCCGGA	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	1118
BspMI	ACCTGC	1 cut(s)	384
BspPI	GGATC	2 cut(s)	905, 914
BspQI	GCTCTTC	1 cut(s)	57
BspT104I	TTCGAA	1 cut(s)	665
BsrFI	RCCGGY	1 cut(s)	578
BsrI	ACTGG	3 cut(s)	481, 986, 1141
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	2 cut(s)	288, 1135
BssMI	GATC	5 cut(s)	136, 499, 813, 910, 919
Bst4CI	ACNGT	4 cut(s)	566, 652, 701, 1050
Bst6I	CTCTTC	7 cut(s)	57, 545, 605, 729, 737, 969, 1016
BstBI	TTCGAA	1 cut(s)	665
BstDEI	CTNAG	4 cut(s)	51, 363, 1065, 1095
BstF5I	GGATG	5 cut(s)	472, 609, 694, 715, 1131
BstKTI	GATC	5 cut(s)	139, 502, 816, 913, 922
BstMAI	GTCTC	2 cut(s)	41, 171
BstMBI	GATC	5 cut(s)	136, 499, 813, 910, 919
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 202, 385, 1007
BstSCI	CCNGG	2 cut(s)	287, 1135
BstV1I	GCAGC	3 cut(s)	108, 917, 1103
BstX2I	RGATCY	1 cut(s)	910
BstYI	RGATCY	1 cut(s)	910
BsuRI	GGCC	4 cut(s)	190, 578, 1010, 1140
BtsCI	GGATG	5 cut(s)	472, 609, 694, 715, 1131
BveI	ACCTGC	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	578
Csp6I	GTAC	2 cut(s)	171, 373
CviAII	CATG	1 cut(s)	1012
CviQI	GTAC	2 cut(s)	171, 373
DdeI	CTNAG	4 cut(s)	51, 363, 1065, 1095
DpnI	GATC	5 cut(s)	138, 501, 815, 912, 921
DpnII	GATC	5 cut(s)	136, 499, 813, 910, 919
EaeI	YGGCCR	2 cut(s)	576, 1138
Eam1104I	CTCTTC	7 cut(s)	57, 545, 605, 729, 737, 969, 1016
EarI	CTCTTC	7 cut(s)	57, 545, 605, 729, 737, 969, 1016
EciI	GGCGGA	1 cut(s)	536
Eco57I	CTGAAG	1 cut(s)	1040
Eco88I	CYCGRG	2 cut(s)	174, 1002
FaeI	CATG	1 cut(s)	1015
FaiI	YATR	6 cut(s)	169, 704, 801, 803, 833, 1013
FaqI	GGGAC	2 cut(s)	529, 661
FatI	CATG	1 cut(s)	1011
FauI	CCCGC	2 cut(s)	257, 981
Fnu4HI	GCNGC	3 cut(s)	97, 906, 1092
FokI	GGATG	5 cut(s)	479, 616, 701, 722, 1118
Fsp4HI	GCNGC	3 cut(s)	97, 906, 1092
GluI	GCNGC	3 cut(s)	97, 906, 1092
GsaI	CCCAGC	2 cut(s)	681, 717
HaeIII	GGCC	4 cut(s)	190, 578, 1010, 1140
HapII	CCGG	8 cut(s)	68, 113, 124, 187, 288, 488, 579, 1137
Hin1II	CATG	1 cut(s)	1015
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	7 cut(s)	179, 284, 758, 820, 866, 1034, 1110
HpaII	CCGG	8 cut(s)	68, 113, 124, 187, 288, 488, 579, 1137
HphI	GGTGA	3 cut(s)	28, 520, 751
Hpy166II	GTNNAC	2 cut(s)	358, 474
Hpy188I	TCNGA	8 cut(s)	82, 201, 209, 283, 504, 1020, 1068, 1109
Hpy188III	TCNNGA	4 cut(s)	488, 817, 1004, 1114
Hpy8I	GTNNAC	2 cut(s)	358, 474
Hpy99I	CGWCG	2 cut(s)	794, 797
HpyAV	CCTTC	6 cut(s)	49, 253, 499, 553, 652, 964
HpyCH4III	ACNGT	4 cut(s)	566, 652, 701, 1050
HpyCH4V	TGCA	5 cut(s)	308, 463, 767, 905, 1043
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 202, 385, 1007
HpyF3I	CTNAG	4 cut(s)	51, 363, 1065, 1095
Hsp92II	CATG	1 cut(s)	1015
Kpn2I	TCCGGA	1 cut(s)	487
Kzo9I	GATC	5 cut(s)	136, 499, 813, 910, 919
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	3 cut(s)	126, 189, 1116
Lsp1109I	GCAGC	3 cut(s)	108, 917, 1103
LweI	GCATC	2 cut(s)	192, 700
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	5 cut(s)	138, 501, 815, 912, 921
MboI	GATC	5 cut(s)	136, 499, 813, 910, 919
MboII	GAAGA	9 cut(s)	74, 562, 619, 622, 746, 754, 784, 986, 1033
MflI	RGATCY	1 cut(s)	910
MhlI	GDGCHC	1 cut(s)	1003
MluCI	AATT	1 cut(s)	886
MlyI	GAGTC	2 cut(s)	173, 875
MmeI	TCCRAC	1 cut(s)	612
MroI	TCCGGA	1 cut(s)	487
MseI	TTAA	3 cut(s)	234, 780, 1053
MspI	CCGG	8 cut(s)	68, 113, 124, 187, 288, 488, 579, 1137
MspR9I	CCNGG	2 cut(s)	289, 1137
Mva1269I	GAATGC	2 cut(s)	538, 1033
MwoI	GCNNNNNNNGC	4 cut(s)	118, 202, 385, 1007
NciI	CCSGG	2 cut(s)	289, 1137
NdeII	GATC	5 cut(s)	136, 499, 813, 910, 919
NlaIII	CATG	1 cut(s)	1015
NlaIV	GGNNCC	1 cut(s)	1118
NspV	TTCGAA	1 cut(s)	665
PaeR7I	CTCGAG	1 cut(s)	1002
PciSI	GCTCTTC	1 cut(s)	57
PctI	GAATGC	2 cut(s)	538, 1033
PfeI	GAWTC	5 cut(s)	284, 758, 820, 1034, 1110
PflFI	GACNNNGTC	1 cut(s)	1103
PkrI	GCNGC	3 cut(s)	98, 907, 1093
PleI	GAGTC	2 cut(s)	173, 874
PpsI	GAGTC	2 cut(s)	173, 874
PspFI	CCCAGC	2 cut(s)	677, 713
PspN4I	GGNNCC	1 cut(s)	1118
PsuI	RGATCY	1 cut(s)	910
PsyI	GACNNNGTC	1 cut(s)	1103
RsaI	GTAC	2 cut(s)	172, 374
RsaNI	GTAC	2 cut(s)	171, 373
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	3 cut(s)	234, 780, 1053
SatI	GCNGC	3 cut(s)	97, 906, 1092
Sau3AI	GATC	5 cut(s)	136, 499, 813, 910, 919
SchI	GAGTC	2 cut(s)	173, 875
ScrFI	CCNGG	2 cut(s)	289, 1137
SduI	GDGCHC	1 cut(s)	1003
SfaNI	GCATC	2 cut(s)	192, 700
Sfr274I	CTCGAG	1 cut(s)	1002
SfuI	TTCGAA	1 cut(s)	665
SlaI	CTCGAG	1 cut(s)	1002
SmlI	CTYRAG	3 cut(s)	158, 380, 1002
SmoI	CTYRAG	3 cut(s)	158, 380, 1002
Sse9I	AATT	1 cut(s)	886
SsiI	CCGC	5 cut(s)	264, 521, 536, 876, 988
StyD4I	CCNGG	2 cut(s)	287, 1135
TaaI	ACNGT	4 cut(s)	566, 652, 701, 1050
TaqI	TCGA	4 cut(s)	135, 665, 935, 1003
TasI	AATT	1 cut(s)	886
TfiI	GAWTC	5 cut(s)	284, 758, 820, 1034, 1110
Tru1I	TTAA	3 cut(s)	234, 780, 1053
Tru9I	TTAA	3 cut(s)	234, 780, 1053
TseI	GCWGC	3 cut(s)	96, 905, 1091
TspDTI	ATGAA	4 cut(s)	620, 710, 747, 1114
TspGWI	ACGGA	1 cut(s)	912
Tth111I	GACNNNGTC	1 cut(s)	1103
XhoI	CTCGAG	1 cut(s)	1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.