Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000517.1

Orthogroup ID

OG0006643

Physical Location & Seq

Genomic Coordinates Reverse (-)

54040 .. 54669

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000517.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atggaggaccacattgaagttcgtgtcgggtcaaaatatcaagctcacgtaccagaatggaccggtgagtcttctgaaagtgactcaaagtggttggggaccagggattggccaattgaaaacccagagcacagaaatttaatcgaaagggatcctcttggaaaaggaaggcaagaatcttgtggctgccaaatgccaggttctatcgaatgtgtcagatttcacattgctgagaaaaggttaagagttaagcgagaactgggatcagctttctaccattggaagttcaatcaaatgggtgaggaagttgggctcccttggccaactgaagaagaaaagaagttcaaggccataataaaggcaaatcctccatctcttgggaagaccttctgggatgatataattgagtcatttcctaagaagagctggagagaattggtaagcttctacttcaatgtctatatcttgcagcgtagaggatatcaaaacaggttcactccaagcaacattgatagcgatgatgaagatttagaatcaggaacagctattaatggttttggacaagaggaacccaattcttcaaagtcaattttgaaatccccgcacaagccacatgggaaatacagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID Myb_DNA-binding

Protein Analysis

209

Amino Acids

24.31

Weight (kDa)

6.4

Isoelectric Point (pI)

67.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46040 AT2G46040 AT2G46040
fragaria_vesca	FvH4_7g14740 FvH4_7g14740 FvH4_7g14740
malus_domestica	MD01G1066000.v1.1 MD07G1134600.v1.1
prunus_persica	Prupe.2G173100_v2.0.a1 Prupe.2G173100_v2.0.a1
pyrus_communis	pycom01g09560 pycom07g13190
rosa_chinensis	RchiOBHm_Chr1g0356691
rosa_laevigata	RLG00000028087
rosa_multiflora	Rmu_co8484219.1_g000001 Rmu_sc0000517.1_g000014 Rmu_sc0000517.1_g000015
rosa_roxburghii	Rroxscaffold_4G00299410
rosa_rugosa	Rorug01G0250600 Rorug01G0250600 Rorug01G0250700
rosa_samantha	Rh1AG264600 Rh1BG232100 Rh1CG248200 Rh1DG259700
rosa_wichuraiana	Rw1G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	67
AccB7I	CCANNNNNTGG	2 cut(s)	108, 377
AciI	CCGC	1 cut(s)	602
AclWI	GGATC	3 cut(s)	146, 159, 271
AcoI	YGGCCR	2 cut(s)	110, 320
AcsI	RAATTY	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	108, 377
AgeI	ACCGGT	1 cut(s)	62
AgsI	TTSAA	7 cut(s)	17, 119, 289, 346, 454, 582, 595
AjnI	CCWGG	2 cut(s)	101, 196
AluBI	AGCT	5 cut(s)	44, 269, 426, 444, 545
AluI	AGCT	5 cut(s)	44, 269, 426, 444, 545
Alw21I	GWGCWC	1 cut(s)	132
AlwI	GGATC	3 cut(s)	146, 159, 271
AoxI	GGCC	3 cut(s)	110, 320, 348
ApeKI	GCWGC	2 cut(s)	186, 469
ApoI	RAATTY	1 cut(s)	136
AseI	ATTAAT	1 cut(s)	549
AsiGI	ACCGGT	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	386
AspS9I	GGNCC	3 cut(s)	7, 60, 99
AsuHPI	GGTGA	2 cut(s)	77, 311
AvaII	GGWCC	3 cut(s)	7, 60, 99
BalI	TGGCCA	2 cut(s)	112, 322
BamHI	GGATCC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	2 cut(s)	63, 389
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	173, 481
BccI	CCATC	1 cut(s)	379
BciT130I	CCWGG	2 cut(s)	103, 198
BisI	GCNGC	2 cut(s)	187, 470
BlsI	GCNGC	2 cut(s)	188, 471
Bme1390I	CCNGG	2 cut(s)	103, 198
Bme18I	GGWCC	3 cut(s)	7, 60, 99
BmgT120I	GGNCC	3 cut(s)	7, 60, 99
BmiI	GGNNCC	4 cut(s)	100, 153, 314, 570
BmrFI	CCNGG	2 cut(s)	103, 198
BmrI	ACTGGG	1 cut(s)	269
BmuI	ACTGGG	1 cut(s)	269
BpiI	GAAGAC	2 cut(s)	63, 389
BpmI	CTGGAG	1 cut(s)	448
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	102, 317
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 377
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	103, 198
BseDI	CCNNGG	2 cut(s)	102, 317
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	108, 377
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	173, 481
BshFI	GGCC	3 cut(s)	112, 322, 350
BshTI	ACCGGT	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	108, 377
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	112, 322, 350
Bsp1286I	GDGCHC	2 cut(s)	132, 315
Bsp143I	GATC	2 cut(s)	151, 263
BspACI	CCGC	1 cut(s)	602
BspANI	GGCC	3 cut(s)	112, 322, 350
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	4 cut(s)	100, 153, 314, 570
BspPI	GGATC	3 cut(s)	146, 159, 271
BspQI	GCTCTTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	264
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	102, 317
BssMI	GATC	2 cut(s)	151, 263
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	2 cut(s)	103, 198
Bst6I	CTCTTC	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	231, 417
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	2 cut(s)	154, 266
BstMBI	GATC	2 cut(s)	151, 263
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	2 cut(s)	103, 198
BstSCI	CCNGG	2 cut(s)	101, 196
BstV1I	GCAGC	2 cut(s)	173, 481
BstV2I	GAAGAC	2 cut(s)	63, 389
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	112, 322, 350
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	3 cut(s)	7, 60, 99
Csp6I	GTAC	1 cut(s)	50
CspAI	ACCGGT	1 cut(s)	62
CviAII	CATG	1 cut(s)	614
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	2 cut(s)	231, 417
DpnI	GATC	2 cut(s)	153, 265
DpnII	GATC	2 cut(s)	151, 263
DrdI	GACNNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	67
EaeI	YGGCCR	2 cut(s)	110, 320
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	482
Eco47I	GGWCC	3 cut(s)	7, 60, 99
Eco57I	CTGAAG	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	101, 196
EcoRV	GATATC	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	1 cut(s)	617
FaiI	YATR	4 cut(s)	353, 401, 462, 615
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	1 cut(s)	613
FauI	CCCGC	1 cut(s)	609
Fnu4HI	GCNGC	2 cut(s)	187, 470
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	187, 470
GluI	GCNGC	2 cut(s)	187, 470
GsuI	CTGGAG	1 cut(s)	448
HaeIII	GGCC	3 cut(s)	112, 322, 350
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	1 cut(s)	617
HindIII	AAGCTT	1 cut(s)	442
HinfI	GANTC	5 cut(s)	68, 83, 176, 407, 533
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	2 cut(s)	77, 311
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	2 cut(s)	76, 218
Hpy188III	TCNNGA	1 cut(s)	537
Hpy8I	GTNNAC	1 cut(s)	495
HpyAV	CCTTC	2 cut(s)	162, 397
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	2 cut(s)	231, 417
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	617
Kzo9I	GATC	2 cut(s)	151, 263
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	2 cut(s)	173, 481
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	2 cut(s)	153, 265
MboI	GATC	2 cut(s)	151, 263
MboII	GAAGA	7 cut(s)	63, 341, 344, 394, 433, 536, 570
MfeI	CAATTG	1 cut(s)	114
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	132, 315
MlsI	TGGCCA	2 cut(s)	112, 322
MluCI	AATT	6 cut(s)	114, 136, 402, 434, 574, 588
MluNI	TGGCCA	2 cut(s)	112, 322
MlyI	GAGTC	3 cut(s)	77, 77, 416
MnlI	CCTC	5 cut(s)	165, 295, 378, 470, 559
Mox20I	TGGCCA	2 cut(s)	112, 322
MroXI	GAANNNNTTC	1 cut(s)	386
MscI	TGGCCA	2 cut(s)	112, 322
MseI	TTAA	4 cut(s)	140, 242, 249, 549
Msp20I	TGGCCA	2 cut(s)	112, 322
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	103, 198
MunI	CAATTG	1 cut(s)	114
MvaI	CCWGG	2 cut(s)	103, 198
MwoI	GCNNNNNNNGC	1 cut(s)	319
NdeII	GATC	2 cut(s)	151, 263
NlaIII	CATG	1 cut(s)	617
NlaIV	GGNNCC	4 cut(s)	100, 153, 314, 570
NmuCI	GTSAC	1 cut(s)	80
PciSI	GCTCTTC	1 cut(s)	416
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	176, 533
PflMI	CCANNNNNTGG	2 cut(s)	108, 377
PinAI	ACCGGT	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	188, 471
PleI	GAGTC	3 cut(s)	76, 77, 415
PpsI	GAGTC	3 cut(s)	76, 77, 415
Ppu21I	YACGTR	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	549
Psp6I	CCWGG	2 cut(s)	101, 196
PspGI	CCWGG	2 cut(s)	101, 196
PspN4I	GGNNCC	4 cut(s)	100, 153, 314, 570
PspPI	GGNCC	3 cut(s)	7, 60, 99
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	4 cut(s)	140, 242, 249, 549
SatI	GCNGC	2 cut(s)	187, 470
Sau3AI	GATC	2 cut(s)	151, 263
Sau96I	GGNCC	3 cut(s)	7, 60, 99
SchI	GAGTC	3 cut(s)	77, 77, 416
ScrFI	CCNGG	2 cut(s)	103, 198
SduI	GDGCHC	2 cut(s)	132, 315
SinI	GGWCC	3 cut(s)	7, 60, 99
Sse9I	AATT	6 cut(s)	114, 136, 402, 434, 574, 588
SsiI	CCGC	1 cut(s)	602
StyD4I	CCNGG	2 cut(s)	101, 196
StyI	CCWWGG	1 cut(s)	317
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	144, 207
TasI	AATT	6 cut(s)	114, 136, 402, 434, 574, 588
TfiI	GAWTC	2 cut(s)	176, 533
Tru1I	TTAA	4 cut(s)	140, 242, 249, 549
Tru9I	TTAA	4 cut(s)	140, 242, 249, 549
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	2 cut(s)	186, 469
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	537
Van91I	CCANNNNNTGG	2 cut(s)	108, 377
VpaK11BI	GGWCC	3 cut(s)	7, 60, 99
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.