Rorug01G0250700
MYB Family

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006643
Physical Location & Seq
Forward (+)
35885521 .. 35886279
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0250700.1

Sequence Viewer

Length: 759 bp
ATGGGTTTTATGCATGCTGTGTTTTCTTCACTTGCAACCGATTATCTGTTTCACCCTCCGGAAAAACCTTTCTACACACTGGAGGAGGAGGAAGGGAGCAAGAAGCTAAAGCTGGAGTTGAGCGCTGTCACGTACACAAAGTTTCCTTGGTACAAACCGGAGTTGAAGCCAGGGATGGACGTTGTCAAGATCAGGACCGAGAGAGGGAATGATATCGTGGCAGTGTATGTTAAGAACCCCTCGGCTTCCTTGACTGTTCTATACTCGCATGGTAATGCTGTAGATTTGGGTAATCTAATGAGCCTTAGGGCCTTGACTGAGCTCAGCGATCACCTCGGAGTCAATGTATTGGGGTACGATTACTCCGGTTACGGCCAGTCCACTGGGAAGCCAAGTGAGGAAAACACTTGTGCAGACATAGAAGCTGCGTATAGATGCCTTGTGGACAAGTACGGTGCAAAGGAGGAAGATGTCATCTTATATGGGAGTTCCATTGGAGCTGGACCTACAATAGACCTTGCAACCCGGTTGCCGAGATTGAGGGGTGTGGTTCTTCAAAGTCCTATCACATCTGCCCTTCGGTTCGTATCGTTTGCACTTTGTGCCGCAGGATTGGAGCGACGATCATATTCGTTTGACATTTATAAGAACCTTGAGAAAATACCTTTAGTTAGTTGTCCTGTACTGGTGATTCATGGGACGGCTGATGAACTGGTGGCATGGCCAGCAGCTTTGGTATCATTCGAAGTATCAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID Myb_DNA-binding

Protein Analysis

252

Amino Acids

27.65

Weight (kDa)

5.44

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF818 PF05677 79 - 167 7.1e-06 Chlamydia CHLPS protein (DUF818)
Hydrolase_4 PF12146 110 - 191 4.5e-08 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 645
AccIII TCCGGA 1 cut(s) 58
AciI CCGC 1 cut(s) 606
AcoI YGGCCR 2 cut(s) 373, 722
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 5 cut(s) 134, 152, 356, 452, 684
AfeI AGCGCT 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 2 cut(s) 166, 557
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 6 cut(s) 106, 112, 322, 425, 500, 731
AluI AGCT 6 cut(s) 106, 112, 322, 425, 500, 731
Alw21I GWGCWC 1 cut(s) 324
Aor13HI TCCGGA 1 cut(s) 58
Aor51HI AGCGCT 1 cut(s) 124
AoxI GGCC 3 cut(s) 309, 373, 722
ApeKI GCWGC 2 cut(s) 425, 728
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 3 cut(s) 195, 309, 503
AsuC2I CCSGG 1 cut(s) 526
AsuHPI GGTGA 3 cut(s) 44, 323, 700
AsuII TTCGAA 1 cut(s) 744
AvaII GGWCC 2 cut(s) 195, 503
AxyI CCTNAGG 1 cut(s) 305
BalI TGGCCA 1 cut(s) 724
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 412, 740
BccI CCATC 1 cut(s) 169
BceAI ACGGC 2 cut(s) 388, 717
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 1 cut(s) 526
BfmI CTRYAG 1 cut(s) 279
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 3 cut(s) 426, 606, 729
BlpI GCTNAGC 1 cut(s) 323
BlsI GCNGC 3 cut(s) 427, 607, 730
Bme1390I CCNGG 2 cut(s) 171, 526
Bme18I GGWCC 2 cut(s) 195, 503
BmgT120I GGNCC 3 cut(s) 195, 309, 503
BmrFI CCNGG 2 cut(s) 171, 526
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 1 cut(s) 425
BmuI ACTGGG 1 cut(s) 393
BpmI CTGGAG 2 cut(s) 101, 134
Bpu1102I GCTNAGC 1 cut(s) 323
Bpu14I TTCGAA 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 674
BpuMI CCSGG 1 cut(s) 526
BsaAI YACGTR 1 cut(s) 132
BsaJI CCNNGG 4 cut(s) 146, 170, 240, 334
BsaWI WCCGGW 3 cut(s) 58, 157, 365
BsaXI ACNNNNNCTCC 4 cut(s) 330, 347, 360, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 5 cut(s) 84, 376, 388, 690, 717
Bse21I CCTNAGG 1 cut(s) 305
BseAI TCCGGA 1 cut(s) 58
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 4 cut(s) 146, 170, 240, 334
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 2 cut(s) 309, 337
BseNI ACTGG 5 cut(s) 84, 376, 388, 690, 717
BseRI GAGGAG 2 cut(s) 98, 101
BseXI GCAGC 2 cut(s) 412, 740
BsgI GTGCAG 1 cut(s) 432
BshFI GGCC 3 cut(s) 311, 375, 724
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 4 cut(s) 59, 158, 366, 526
BslFI GGGAC 1 cut(s) 712
BslI CCNNNNNNNGG 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 712
BsnI GGCC 3 cut(s) 311, 375, 724
Bsp119I TTCGAA 1 cut(s) 744
Bsp1286I GDGCHC 1 cut(s) 324
Bsp13I TCCGGA 1 cut(s) 58
Bsp143I GATC 3 cut(s) 189, 328, 623
Bsp1720I GCTNAGC 1 cut(s) 323
BspACI CCGC 1 cut(s) 606
BspANI GGCC 3 cut(s) 311, 375, 724
BspCNI CTCAG 2 cut(s) 310, 336
BspEI TCCGGA 1 cut(s) 58
BspT104I TTCGAA 1 cut(s) 744
BsrI ACTGG 5 cut(s) 84, 376, 388, 690, 717
BssECI CCNNGG 4 cut(s) 146, 170, 240, 334
BssMI GATC 3 cut(s) 189, 328, 623
BssT1I CCWWGG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 256, 455
BstAPI GCANNNNNTGC 1 cut(s) 602
BstBAI YACGTR 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 744
BstC8I GCNNGC 2 cut(s) 15, 726
BstDEI CTNAG 3 cut(s) 305, 318, 323
BstF5I GGATG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 3 cut(s) 192, 331, 626
BstMBI GATC 3 cut(s) 189, 328, 623
BstMWI GCNNNNNNNGC 2 cut(s) 602, 725
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 17
BstSCI CCNGG 2 cut(s) 169, 524
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 412, 740
BstXI CCANNNNNNTGG 1 cut(s) 383
Bsu36I CCTNAGG 1 cut(s) 305
BsuRI GGCC 3 cut(s) 311, 375, 724
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 77, 228, 381
Cac8I GCNNGC 2 cut(s) 15, 726
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 3 cut(s) 195, 309, 503
Csp6I GTAC 5 cut(s) 133, 151, 355, 451, 683
CviAII CATG 4 cut(s) 14, 269, 695, 720
CviQI GTAC 5 cut(s) 133, 151, 355, 451, 683
DdeI CTNAG 3 cut(s) 305, 318, 323
DpnI GATC 3 cut(s) 191, 330, 625
DpnII GATC 3 cut(s) 189, 328, 623
DraIII CACNNNGTG 1 cut(s) 602
EaeI YGGCCR 2 cut(s) 373, 722
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 324
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 2 cut(s) 195, 503
Eco47III AGCGCT 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 322
Eco81I CCTNAGG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 169
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 4 cut(s) 17, 272, 698, 723
FaqI GGGAC 1 cut(s) 712
FatI CATG 4 cut(s) 13, 268, 694, 719
Fnu4HI GCNGC 3 cut(s) 426, 606, 729
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 3 cut(s) 426, 606, 729
GlaI GCGC 1 cut(s) 124
GluI GCNGC 3 cut(s) 426, 606, 729
GsuI CTGGAG 2 cut(s) 101, 134
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 3 cut(s) 311, 375, 724
HapII CCGG 4 cut(s) 59, 158, 366, 526
HhaI GCGC 1 cut(s) 125
Hin1II CATG 4 cut(s) 17, 272, 698, 723
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 2 cut(s) 339, 691
HpaII CCGG 4 cut(s) 59, 158, 366, 526
HphI GGTGA 3 cut(s) 44, 323, 700
Hpy166II GTNNAC 3 cut(s) 135, 381, 445
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 3 cut(s) 59, 187, 193
Hpy8I GTNNAC 3 cut(s) 135, 381, 445
Hpy99I CGWCG 1 cut(s) 624
HpyAV CCTTC 2 cut(s) 86, 587
HpyCH4III ACNGT 2 cut(s) 256, 455
HpyCH4IV ACGT 2 cut(s) 131, 180
HpyCH4V TGCA 6 cut(s) 13, 35, 413, 458, 521, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 602, 725
HpyF3I CTNAG 3 cut(s) 305, 318, 323
HpySE526I ACGT 2 cut(s) 131, 180
Hsp92II CATG 4 cut(s) 17, 272, 698, 723
HspAI GCGC 1 cut(s) 123
Kpn2I TCCGGA 1 cut(s) 58
Kzo9I GATC 3 cut(s) 189, 328, 623
LmnI GCTCC 3 cut(s) 96, 497, 616
Lsp1109I GCAGC 2 cut(s) 412, 740
LweI GCATC 1 cut(s) 425
MaeII ACGT 2 cut(s) 131, 180
MaeIII GTNAC 2 cut(s) 127, 368
MalI GATC 3 cut(s) 191, 330, 625
MboI GATC 3 cut(s) 189, 328, 623
MboII GAAGA 3 cut(s) 18, 479, 545
MhlI GDGCHC 1 cut(s) 324
MlsI TGGCCA 1 cut(s) 724
MluNI TGGCCA 1 cut(s) 724
MlyI GAGTC 1 cut(s) 348
Mox20I TGGCCA 1 cut(s) 724
Mph1103I ATGCAT 1 cut(s) 15
MroI TCCGGA 1 cut(s) 58
MscI TGGCCA 1 cut(s) 724
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 724
MspI CCGG 4 cut(s) 59, 158, 366, 526
MspR9I CCNGG 2 cut(s) 171, 526
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 602, 725
NciI CCSGG 1 cut(s) 526
NdeII GATC 3 cut(s) 189, 328, 623
NlaIII CATG 4 cut(s) 17, 272, 698, 723
NmeAIII GCCGAG 2 cut(s) 221, 558
NmuCI GTSAC 1 cut(s) 127
NsiI ATGCAT 1 cut(s) 15
NspI RCATGY 1 cut(s) 17
NspV TTCGAA 1 cut(s) 744
PaeI GCATGC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 691
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 3 cut(s) 427, 607, 730
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
Ppu21I YACGTR 1 cut(s) 132
PsiI TTATAA 1 cut(s) 645
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspPI GGNCC 3 cut(s) 195, 309, 503
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 5 cut(s) 134, 152, 356, 452, 684
RsaNI GTAC 5 cut(s) 133, 151, 355, 451, 683
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 3 cut(s) 426, 606, 729
Sau3AI GATC 3 cut(s) 189, 328, 623
Sau96I GGNCC 3 cut(s) 195, 309, 503
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 171, 526
SduI GDGCHC 1 cut(s) 324
SfaNI GCATC 1 cut(s) 425
SfcI CTRYAG 1 cut(s) 279
SfuI TTCGAA 1 cut(s) 744
SinI GGWCC 2 cut(s) 195, 503
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
SphI GCATGC 1 cut(s) 17
SsiI CCGC 1 cut(s) 606
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 169, 524
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 2 cut(s) 256, 455
TaiI ACGT 2 cut(s) 134, 183
TaqI TCGA 1 cut(s) 744
TaqII GACCGA 1 cut(s) 212
TatI WGTACW 1 cut(s) 682
TauI GCSGC 1 cut(s) 608
TfiI GAWTC 1 cut(s) 691
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 3 cut(s) 84, 228, 388
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 425, 728
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 683, 723
TspRI CASTG 3 cut(s) 84, 228, 388
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 195, 503
XceI RCATGY 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.