pycom01g09560
MYB Family

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
10409779 .. 10412491
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g09560.1

Sequence Viewer

Length: 1611 bp
ATGGCTTTGCAGGAGGAGTTAACAGAGTTCTTCTCAGATATGTCTGACCAAAAATTGAAAGACGGGGGTTACCCGCATGTTGAATTGTCATCTAAGAGTTGTAAGGATAGTAATGAGGTGGAAAGTGCAGTAGCAGATTCGGATAGGCTCAAGAAAAGTGGTGTTAGTGAAGAATTTCTGGATTTGGATACGATGAGTGTGGCAAATGTTTTGAATGCTGGAAAATTTGGCAATGGTAATGTGCCTTTGTCAAGTTGTGGCATGAAATATTTTGTGGATTTGACGAATAGCATGGAGGATGTTGACAAGTTGCGTGACAATAATGAGGTAAAAAGTGAGATGGGGGAATCGGGGAGAGGTAAGAAAAATTATGACATTGGTGAAGATGTCATGATTTTGGATCCATCTGCTGTTGAAGAAGTGAACTCTTTCTGTAAAAGGAAGCGACAGTCATTCGGGGGAAGTGAGGTGGGGGAATTGCGTAGAGGGAAGAAAAATCACAGTAGTGATGAACATGTCATGATTTTGGATTCCTCGACGGTTGAAGAAGAGAGTCCTTTTTGCGAAACAAAGCAAGAATCACTGTGTATGCTGAATTGGGTTAAAATGATTGCAAAGGATCCTTGTGATCCTTCAGTTGGTTCATTACCAGAGAGGTCAAAGTGGAAGTTCTTCGGGAAGGAGGAGAACTGGATGCAGGTTTTGCAGGCTCGAGAAGCTATCTTTCTGAAGAGGAATGCTGATTCAGGTCCTGAACAGTCTAACTGGCAGAAGAATCAGAGGATGCATCCAAGCATGTACGATGATAATTTTGGCTCCGCTTACAATCTTAGAGAGAGGTTAAGGTTGGAGAAGAAGCTTCTTTCAGATGGGAGAACACCACAATCAGGACCCTGTTCAGAGTCATCCTCGGCCAGTGACTTGGACAAAAATAGTCCTGGCATGGCAGGGATGGAGGATGAGTTGCGAGGAACCAGTGATTATTCTCCAAGCCACATTCCTCTCGGGTCAAATTATCAAGCTCAGTTGCCAGAATGGACTGGTGAGGCTTCTGAAAGTGAATCGAAGTGGTTGGGGTCCAGGATTTGGCCATTGGAAAAACCAGAGCACAGATATCTCATTGAGAGGATCGATCCTATTGGAAAGGGAAGACAAGAATCTTGCGGATGCCAAGTGCCAGGTTCTATAGAATGCGTCAGATTTCACATTTCTGAGAAAAGGTTAAGAGTTAAGCGGGAACTGGGGGCAGCTTTCTACCACTGGGAATTCAATCAGATGGGCGAGGAAGTTGGACTCCCTTGGACAGCAGAAGAAGGAAAGAAGTTCGAGGCCTTAGTAAAGTCAAATCCTCTATCTATTGGATTGCGTTTTTGGGATGAGATATATAAGACTTTTACTAAGAAGAGCAGGAGAGAATTGGTTAGCTACTATTTCAATGTCTTTCTCTTGCAGCGTAGAGGATACCAGAACAGGTTTACTCCAAACAAAATTGATAGTGATGATGAAGAATTAGAGTTGGAATCAATGACAAACTGTTTTGGGAATGAAGAACACAAGTCATCAAAATCAATCTTAAAATCCCCACACAAGCCACATGCAAAACACAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

537

Amino Acids

61.05

Weight (kDa)

5.49

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 688
AccB7I CCANNNNNTGG 1 cut(s) 1086
AciI CCGC 4 cut(s) 74, 819, 1164, 1234
AclWI GGATC 7 cut(s) 395, 408, 614, 623, 627, 1127, 1136
AcoI YGGCCR 2 cut(s) 912, 1088
AcsI RAATTY 3 cut(s) 173, 224, 1265
AcuI CTGAAG 2 cut(s) 618, 749
AfaI GTAC 1 cut(s) 800
AfiI CCNNNNNNNGG 3 cut(s) 638, 887, 1086
AflIII ACRYGT 1 cut(s) 514
AgsI TTSAA 7 cut(s) 58, 83, 214, 416, 545, 1270, 1435
AjnI CCWGG 3 cut(s) 937, 1079, 1177
AleI CACNNNNGTG 1 cut(s) 504
AluBI AGCT 5 cut(s) 719, 859, 1022, 1250, 1425
AluI AGCT 5 cut(s) 719, 859, 1022, 1250, 1425
Alw21I GWGCWC 1 cut(s) 1110
AlwI GGATC 7 cut(s) 395, 408, 614, 623, 627, 1127, 1136
AlwNI CAGNNNCTG 1 cut(s) 752
Ama87I CYCGRG 2 cut(s) 711, 1004
AoxI GGCC 3 cut(s) 912, 1088, 1329
ApeKI GCWGC 2 cut(s) 1247, 1450
ApoI RAATTY 3 cut(s) 173, 224, 1265
Asp700I GAANNNNTTC 3 cut(s) 174, 428, 671
AspS9I GGNCC 3 cut(s) 749, 890, 1077
AsuHPI GGTGA 2 cut(s) 392, 1055
AvaI CYCGRG 2 cut(s) 711, 1004
AvaII GGWCC 3 cut(s) 749, 890, 1077
BalI TGGCCA 1 cut(s) 1090
BamHI GGATCC 2 cut(s) 400, 619
BbsI GAAGAC 1 cut(s) 1156
Bbv12I GWGCWC 1 cut(s) 1110
BbvI GCAGC 2 cut(s) 1259, 1462
BccI CCATC 5 cut(s) 334, 412, 863, 946, 1270
BciT130I CCWGG 3 cut(s) 939, 1081, 1179
BciVI GTATCC 2 cut(s) 181, 1454
BfmI CTRYAG 1 cut(s) 1185
BfuAI ACCTGC 1 cut(s) 688
BfuI GTATCC 2 cut(s) 181, 1454
BisI GCNGC 2 cut(s) 1248, 1451
BlsI GCNGC 2 cut(s) 1249, 1452
Bme1390I CCNGG 3 cut(s) 939, 1081, 1179
Bme18I GGWCC 3 cut(s) 749, 890, 1077
BmeT110I CYCGRG 2 cut(s) 711, 1004
BmgT120I GGNCC 3 cut(s) 749, 890, 1077
BmiI GGNNCC 6 cut(s) 402, 621, 817, 892, 973, 1078
BmrFI CCNGG 3 cut(s) 939, 1081, 1179
BmrI ACTGGG 2 cut(s) 1250, 1270
BmsI GCATC 4 cut(s) 684, 774, 796, 1157
BmuI ACTGGG 2 cut(s) 1250, 1270
BpiI GAAGAC 1 cut(s) 1156
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 893, 925
BpuEI CTTGAG 1 cut(s) 134
Bsa29I ATCGAT 1 cut(s) 1131
BsaJI CCNNGG 2 cut(s) 909, 1298
BsaXI ACNNNNNCTCC 2 cut(s) 947, 977
Bsc4I CCNNNNNNNGG 3 cut(s) 638, 887, 1086
Bse1I ACTGG 7 cut(s) 695, 770, 915, 975, 1045, 1245, 1265
Bse3DI GCAATG 1 cut(s) 238
BseBI CCWGG 3 cut(s) 939, 1081, 1179
BseCI ATCGAT 1 cut(s) 1131
BseDI CCNNGG 2 cut(s) 909, 1298
BseGI GGATG 9 cut(s) 304, 699, 787, 789, 905, 957, 964, 1172, 1381
BseLI CCNNNNNNNGG 3 cut(s) 638, 887, 1086
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 3 cut(s) 48, 1037, 1203
BseNI ACTGG 7 cut(s) 695, 770, 915, 975, 1045, 1245, 1265
BseRI GAGGAG 2 cut(s) 29, 698
BseXI GCAGC 2 cut(s) 1259, 1462
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 3 cut(s) 914, 1090, 1331
BshVI ATCGAT 1 cut(s) 1131
BsiHKAI GWGCWC 1 cut(s) 1110
BsiHKCI CYCGRG 2 cut(s) 711, 1004
BslI CCNNNNNNNGG 3 cut(s) 638, 887, 1086
BsmI GAATGC 3 cut(s) 220, 742, 1196
BsnI GGCC 3 cut(s) 914, 1090, 1331
BsoBI CYCGRG 2 cut(s) 711, 1004
Bsp1286I GDGCHC 1 cut(s) 1110
Bsp143I GATC 5 cut(s) 400, 619, 628, 1128, 1132
BspACI CCGC 4 cut(s) 74, 819, 1164, 1234
BspANI GGCC 3 cut(s) 914, 1090, 1331
BspCNI CTCAG 3 cut(s) 47, 1036, 1204
BspDI ATCGAT 1 cut(s) 1131
BspHI TCATGA 2 cut(s) 390, 519
BspLI GGNNCC 6 cut(s) 402, 621, 817, 892, 973, 1078
BspMI ACCTGC 1 cut(s) 688
BspPI GGATC 7 cut(s) 395, 408, 614, 623, 627, 1127, 1136
BspQI GCTCTTC 1 cut(s) 1397
BsrDI GCAATG 1 cut(s) 238
BsrI ACTGG 7 cut(s) 695, 770, 915, 975, 1045, 1245, 1265
BssECI CCNNGG 2 cut(s) 909, 1298
BssMI GATC 5 cut(s) 400, 619, 628, 1128, 1132
BssT1I CCWWGG 1 cut(s) 1298
Bst2UI CCWGG 3 cut(s) 939, 1081, 1179
Bst4CI ACNGT 6 cut(s) 450, 503, 541, 585, 759, 1535
Bst6I CTCTTC 3 cut(s) 543, 725, 1397
BstAPI GCANNNNNTGC 1 cut(s) 703
BstC8I GCNNGC 1 cut(s) 708
BstDEI CTNAG 7 cut(s) 34, 93, 830, 1023, 1212, 1333, 1398
BstEII GGTNACC 1 cut(s) 68
BstF5I GGATG 9 cut(s) 304, 699, 787, 789, 905, 957, 964, 1172, 1381
BstKTI GATC 5 cut(s) 403, 622, 631, 1131, 1135
BstMBI GATC 5 cut(s) 400, 619, 628, 1128, 1132
BstMWI GCNNNNNNNGC 2 cut(s) 703, 716
BstNI CCWGG 3 cut(s) 939, 1081, 1179
BstNSI RCATGY 4 cut(s) 80, 518, 799, 1598
BstPI GGTNACC 1 cut(s) 68
BstSCI CCNGG 3 cut(s) 937, 1079, 1177
BstSFI CTRYAG 1 cut(s) 1185
BstV1I GCAGC 2 cut(s) 1259, 1462
BstV2I GAAGAC 1 cut(s) 1156
BstX2I RGATCY 2 cut(s) 400, 619
BstXI CCANNNNNNTGG 1 cut(s) 922
BstYI RGATCY 2 cut(s) 400, 619
Bsu15I ATCGAT 1 cut(s) 1131
BsuI GTATCC 2 cut(s) 181, 1454
BsuRI GGCC 3 cut(s) 914, 1090, 1331
BsuTUI ATCGAT 1 cut(s) 1131
BtsCI GGATG 9 cut(s) 304, 699, 787, 789, 905, 957, 964, 1172, 1381
BtsIMutI CAGTG 4 cut(s) 581, 922, 982, 1258
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 1 cut(s) 708
CaiI CAGNNNCTG 1 cut(s) 752
CciI TCATGA 2 cut(s) 390, 519
Cfr13I GGNCC 3 cut(s) 749, 890, 1077
ClaI ATCGAT 1 cut(s) 1131
CseI GACGC 1 cut(s) 1183
Csp6I GTAC 1 cut(s) 799
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 9 cut(s) 77, 262, 292, 391, 515, 520, 796, 943, 1595
CviQI GTAC 1 cut(s) 799
DdeI CTNAG 7 cut(s) 34, 93, 830, 1023, 1212, 1333, 1398
DpnI GATC 5 cut(s) 402, 621, 630, 1130, 1134
DpnII GATC 5 cut(s) 400, 619, 628, 1128, 1132
EaeI YGGCCR 2 cut(s) 912, 1088
Eam1104I CTCTTC 3 cut(s) 543, 725, 1397
EarI CTCTTC 3 cut(s) 543, 725, 1397
Eco130I CCWWGG 1 cut(s) 1298
Eco147I AGGCCT 1 cut(s) 1331
Eco32I GATATC 1 cut(s) 1115
Eco47I GGWCC 3 cut(s) 749, 890, 1077
Eco57I CTGAAG 2 cut(s) 618, 749
Eco88I CYCGRG 2 cut(s) 711, 1004
Eco91I GGTNACC 1 cut(s) 68
EcoO109I RGGNCCY 2 cut(s) 749, 890
EcoO65I GGTNACC 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 1265
EcoRII CCWGG 3 cut(s) 937, 1079, 1177
EcoRV GATATC 1 cut(s) 1115
EcoT14I CCWWGG 1 cut(s) 1298
EcoT22I ATGCAT 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 1298
FaeI CATG 9 cut(s) 80, 265, 295, 394, 518, 523, 799, 946, 1598
FatI CATG 9 cut(s) 76, 261, 291, 390, 514, 519, 795, 942, 1594
FauI CCCGC 2 cut(s) 81, 1227
Fnu4HI GCNGC 2 cut(s) 1248, 1451
FokI GGATG 9 cut(s) 311, 706, 774, 796, 892, 964, 971, 1179, 1388
Fsp4HI GCNGC 2 cut(s) 1248, 1451
GluI GCNGC 2 cut(s) 1248, 1451
HaeIII GGCC 3 cut(s) 914, 1090, 1331
HgaI GACGC 1 cut(s) 1183
Hin1II CATG 9 cut(s) 80, 265, 295, 394, 518, 523, 799, 946, 1598
HincII GTYRAC 2 cut(s) 21, 304
HindII GTYRAC 2 cut(s) 21, 304
HindIII AAGCTT 1 cut(s) 857
HpaI GTTAAC 1 cut(s) 21
HphI GGTGA 2 cut(s) 392, 1055
Hpy166II GTNNAC 4 cut(s) 21, 304, 424, 1476
Hpy188III TCNNGA 8 cut(s) 151, 179, 391, 520, 676, 713, 752, 888
Hpy8I GTNNAC 4 cut(s) 21, 304, 424, 1476
Hpy99I CGWCG 1 cut(s) 541
HpyAV CCTTC 3 cut(s) 642, 673, 1307
HpyCH4III ACNGT 6 cut(s) 450, 503, 541, 585, 759, 1535
HpyCH4V TGCA 8 cut(s) 10, 128, 614, 697, 706, 787, 1450, 1598
HpyF10VI GCNNNNNNNGC 2 cut(s) 703, 716
HpyF3I CTNAG 7 cut(s) 34, 93, 830, 1023, 1212, 1333, 1398
Hsp92II CATG 9 cut(s) 80, 265, 295, 394, 518, 523, 799, 946, 1598
KspAI GTTAAC 1 cut(s) 21
Kzo9I GATC 5 cut(s) 400, 619, 628, 1128, 1132
LguI GCTCTTC 1 cut(s) 1397
LmnI GCTCC 1 cut(s) 821
Lsp1109I GCAGC 2 cut(s) 1259, 1462
LweI GCATC 4 cut(s) 684, 774, 796, 1157
MaeIII GTNAC 3 cut(s) 68, 314, 917
MalI GATC 5 cut(s) 402, 621, 630, 1130, 1134
MboI GATC 5 cut(s) 400, 619, 628, 1128, 1132
MflI RGATCY 2 cut(s) 400, 619
MhlI GDGCHC 1 cut(s) 1110
MlsI TGGCCA 1 cut(s) 1090
MluNI TGGCCA 1 cut(s) 1090
MlyI GAGTC 3 cut(s) 562, 911, 1287
MmeI TCCRAC 3 cut(s) 828, 1270, 1497
Mox20I TGGCCA 1 cut(s) 1090
Mph1103I ATGCAT 1 cut(s) 789
MroXI GAANNNNTTC 3 cut(s) 174, 428, 671
MscI TGGCCA 1 cut(s) 1090
MseI TTAA 6 cut(s) 20, 603, 842, 1223, 1230, 1574
MslI CAYNNNNRTG 1 cut(s) 504
Msp20I TGGCCA 1 cut(s) 1090
MspR9I CCNGG 3 cut(s) 939, 1081, 1179
Mva1269I GAATGC 3 cut(s) 220, 742, 1196
MvaI CCWGG 3 cut(s) 939, 1081, 1179
MwoI GCNNNNNNNGC 2 cut(s) 703, 716
NdeII GATC 5 cut(s) 400, 619, 628, 1128, 1132
NlaIII CATG 9 cut(s) 80, 265, 295, 394, 518, 523, 799, 946, 1598
NlaIV GGNNCC 6 cut(s) 402, 621, 817, 892, 973, 1078
NmeAIII GCCGAG 1 cut(s) 890
NmuCI GTSAC 2 cut(s) 314, 917
NsiI ATGCAT 1 cut(s) 789
NspI RCATGY 4 cut(s) 80, 518, 799, 1598
OliI CACNNNNGTG 1 cut(s) 504
PaeR7I CTCGAG 1 cut(s) 711
PagI TCATGA 2 cut(s) 390, 519
PceI AGGCCT 1 cut(s) 1331
PciI ACATGT 1 cut(s) 514
PciSI GCTCTTC 1 cut(s) 1397
PctI GAATGC 3 cut(s) 220, 742, 1196
PdmI GAANNNNTTC 3 cut(s) 174, 428, 671
PfeI GAWTC 9 cut(s) 137, 347, 530, 578, 743, 775, 1061, 1157, 1520
PflMI CCANNNNNTGG 1 cut(s) 1086
PfoI TCCNGGA 1 cut(s) 1079
PkrI GCNGC 2 cut(s) 1249, 1452
PleI GAGTC 3 cut(s) 561, 910, 1287
PpsI GAGTC 3 cut(s) 561, 910, 1287
PpuMI RGGWCCY 2 cut(s) 749, 890
PscI ACATGT 1 cut(s) 514
Psp5II RGGWCCY 2 cut(s) 749, 890
Psp6I CCWGG 3 cut(s) 937, 1079, 1177
PspEI GGTNACC 1 cut(s) 68
PspGI CCWGG 3 cut(s) 937, 1079, 1177
PspN4I GGNNCC 6 cut(s) 402, 621, 817, 892, 973, 1078
PspPI GGNCC 3 cut(s) 749, 890, 1077
PspPPI RGGWCCY 2 cut(s) 749, 890
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 2 cut(s) 400, 619
RsaI GTAC 1 cut(s) 800
RsaNI GTAC 1 cut(s) 799
RseI CAYNNNNRTG 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 1397
SaqAI TTAA 6 cut(s) 20, 603, 842, 1223, 1230, 1574
SatI GCNGC 2 cut(s) 1248, 1451
Sau3AI GATC 5 cut(s) 400, 619, 628, 1128, 1132
Sau96I GGNCC 3 cut(s) 749, 890, 1077
SchI GAGTC 3 cut(s) 562, 911, 1287
ScrFI CCNGG 3 cut(s) 939, 1081, 1179
SduI GDGCHC 1 cut(s) 1110
SfaNI GCATC 4 cut(s) 684, 774, 796, 1157
SfcI CTRYAG 1 cut(s) 1185
Sfr274I CTCGAG 1 cut(s) 711
SinI GGWCC 3 cut(s) 749, 890, 1077
SlaI CTCGAG 1 cut(s) 711
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 2 cut(s) 149, 711
SmoI CTYRAG 2 cut(s) 149, 711
SseBI AGGCCT 1 cut(s) 1331
SsiI CCGC 4 cut(s) 74, 819, 1164, 1234
SspI AATATT 1 cut(s) 269
StuI AGGCCT 1 cut(s) 1331
StyD4I CCNGG 3 cut(s) 937, 1079, 1177
StyI CCWWGG 1 cut(s) 1298
TaaI ACNGT 6 cut(s) 450, 503, 541, 585, 759, 1535
TaqI TCGA 5 cut(s) 536, 712, 1064, 1131, 1326
TfiI GAWTC 9 cut(s) 137, 347, 530, 578, 743, 775, 1061, 1157, 1520
Tru1I TTAA 6 cut(s) 20, 603, 842, 1223, 1230, 1574
Tru9I TTAA 6 cut(s) 20, 603, 842, 1223, 1230, 1574
TscAI CASTG 4 cut(s) 588, 922, 982, 1265
TseFI GTSAC 2 cut(s) 314, 917
TseI GCWGC 2 cut(s) 1247, 1450
Tsp45I GTSAC 2 cut(s) 314, 917
TspDTI ATGAA 5 cut(s) 278, 525, 633, 1518, 1560
TspRI CASTG 4 cut(s) 588, 922, 982, 1265
Van91I CCANNNNNTGG 1 cut(s) 1086
VpaK11BI GGWCC 3 cut(s) 749, 890, 1077
XapI RAATTY 3 cut(s) 173, 224, 1265
XceI RCATGY 4 cut(s) 80, 518, 799, 1598
XhoI CTCGAG 1 cut(s) 711
XmnI GAANNNNTTC 3 cut(s) 174, 428, 671
Zsp2I ATGCAT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.