Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006643

Physical Location & Seq

Genomic Coordinates Forward (+)

35881544 .. 35884131

Gene Structure 2588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0250600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGAACGACACCCAAGTCGTGAAGGTCAAGCATGAGGATGATGAAGGATCGTCGCCGCCGTCGATCAAGCTCGGTCTTGCGATCGGCGGTGATGGTGGTGATTGTGAGGTAGTGGGGAAGAGGAGGAGGAGTGAGTTTACGGTGGCTCAGTTGGATGAGTTGGAGCATCAGAGGCTTGTTTATAAGTACATAGCTGCTGGGTTGCCTGCTCCTTTTCAGCTTGTGCTTCCCATTTGGAAGAGTGTGGCTGCCGGTTTTTCTAATGCTGCTTTCTACCAGCAGTATCCCAGCTTTCTAGGATATGGGGGTTTCGACTACAGGAGTAAAATGGATACTGAGCCAGGAAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGTAGTAGGGATGTAGTGCCTGATGAGAAGTACTGTGAGAAACACATGCACAGAGGGCGCCATCGTTCAAGAAAGCCTGTGGAAGCTTCTCAAGTCACTTCTCCTCCCAGCACAAAGCTACTGAAGAATTCTGACGGCGAACTGTTGAATTCAAAGAAAAACCTTCAGATTCAAACCCCCAAAGGCCTTCAACTTATGGCGCAACCCTCCAATAATGGTAGTGTCAGCCACAGTCGAACTACCTTCTCTAGTGGCTATCATGAGTTACCTAAGAACAATATTAGTACAGTTGCATACACTACCAGCACACCTTCATATAGAACCGCTGTTACCCCTGCTGCTGTAGCCCCTTCCACCACTGCTGGACAAATGACCGCAACCGCCAGCACTTGCAATGACAATAAGATCTGGATCGGTGTGAAAGACTATGGTTGCAACTACCATGCTGGTAATTATGGCATTATCAGAGGAAGCAGAAACAACATCAATGTTGGCAGTAATATATCACCCGGATCAGGCTTCTCCCCCAAAAGTGTTCTTCAGGCAGGACATATGATTCTTGTAAATTGCAATGGCTTATACTTTGACAACAGACGTGGCGAAGAACTTGAACCAGGCAGGTGTAGGAGGACAGATGGAAAGAAGTGGCGGTGCAAAAGGGATGTTCTTCCTGATCAGAAGTACTGTGACCGGCATATCCACAGAGGAGTAAAGCAAATGAGAACCTTTGGCCCTGTTACTGCTGCTTCTACCTCGGCCACTGCAATGAATTCTACTCGGCCCTCTCAGACCACAGGCATAGCTGGAGAAACTGATTGTGCAATCCCTAATACAAATCTCACCATGTCCATCCCAGCAAGATCACCACTGATGCAAAATGATGAAAAAAGTGATTCCACCAGCGACAGTGACGCAACCATTACAGACACCAGCCTTGCTGCTTATGAACAGCTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID Myb_DNA-binding

Protein Analysis

445

Amino Acids

48.79

Weight (kDa)

9.22

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	46 - 79	1.8e-10	QLQ
WRC	PF08879	113 - 154	3e-21	WRC
WRC	PF08879	330 - 365	2.5e-18	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46040 AT2G46040 AT2G46040
fragaria_vesca	FvH4_7g14740 FvH4_7g14740 FvH4_7g14740
malus_domestica	MD01G1066000.v1.1 MD07G1134600.v1.1
prunus_persica	Prupe.2G173100_v2.0.a1 Prupe.2G173100_v2.0.a1
pyrus_communis	pycom01g09560 pycom07g13190
rosa_chinensis	RchiOBHm_Chr1g0356691
rosa_laevigata	RLG00000028087
rosa_multiflora	Rmu_co8484219.1_g000001 Rmu_sc0000517.1_g000014 Rmu_sc0000517.1_g000015
rosa_roxburghii	Rroxscaffold_4G00299410
rosa_rugosa	Rorug01G0250600 Rorug01G0250600 Rorug01G0250700
rosa_samantha	Rh1AG264600 Rh1BG232100 Rh1CG248200 Rh1DG259700
rosa_wichuraiana	Rw1G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AarI	CACCTGC	1 cut(s)	987
AasI	GACNNNNNNGTC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	987
AccB1I	GGYRCC	1 cut(s)	435
AciI	CCGC	6 cut(s)	56, 87, 702, 753, 759, 1027
AclWI	GGATC	3 cut(s)	55, 797, 898
AcoI	YGGCCR	1 cut(s)	1134
AcsI	RAATTY	3 cut(s)	505, 526, 1147
AcuI	CTGAAG	3 cut(s)	521, 527, 902
AcyI	GRCGYC	1 cut(s)	436
AfaI	GTAC	4 cut(s)	188, 410, 664, 1061
AfiI	CCNNNNNNNGG	1 cut(s)	893
AgsI	TTSAA	6 cut(s)	447, 526, 531, 551, 569, 989
AjiI	CACGTC	1 cut(s)	974
AjnI	CCWGG	2 cut(s)	340, 991
AluBI	AGCT	8 cut(s)	70, 194, 220, 291, 464, 496, 1181, 1330
AluI	AGCT	8 cut(s)	70, 194, 220, 291, 464, 496, 1181, 1330
AlwI	GGATC	3 cut(s)	55, 797, 898
AoxI	GGCC	4 cut(s)	562, 1108, 1134, 1157
ApeKI	GCWGC	6 cut(s)	194, 248, 266, 716, 1121, 1316
ApoI	RAATTY	3 cut(s)	505, 526, 1147
AspLEI	GCGC	2 cut(s)	438, 580
AspS9I	GGNCC	2 cut(s)	1109, 1158
AsuC2I	CCSGG	1 cut(s)	888
AsuHPI	GGTGA	5 cut(s)	101, 110, 876, 1210, 1233
BanI	GGYRCC	1 cut(s)	435
BbvI	GCAGC	6 cut(s)	181, 235, 253, 703, 1108, 1303
BccI	CCATC	5 cut(s)	86, 356, 447, 1007, 1235
BceAI	ACGGC	2 cut(s)	43, 529
BciT130I	CCWGG	2 cut(s)	342, 993
BciVI	GTATCC	2 cut(s)	294, 325
BclI	TGATCA	1 cut(s)	1051
BcnI	CCSGG	1 cut(s)	888
BfaI	CTAG	2 cut(s)	296, 627
BfmI	CTRYAG	2 cut(s)	316, 720
BfoI	RGCGCY	1 cut(s)	439
BfuAI	ACCTGC	1 cut(s)	987
BfuI	GTATCC	2 cut(s)	294, 325
BglII	AGATCT	1 cut(s)	783
BisI	GCNGC	7 cut(s)	56, 195, 249, 267, 717, 1122, 1317
BlsI	GCNGC	7 cut(s)	57, 196, 250, 268, 718, 1123, 1318
BmcAI	AGTACT	2 cut(s)	410, 1061
Bme1390I	CCNGG	3 cut(s)	342, 888, 993
BmgBI	CACGTC	1 cut(s)	974
BmgT120I	GGNCC	2 cut(s)	1109, 1158
BmiI	GGNNCC	1 cut(s)	437
BmrFI	CCNGG	3 cut(s)	342, 888, 993
BmsI	GCATC	2 cut(s)	175, 1239
BpmI	CTGGAG	1 cut(s)	1203
BpuEI	CTTGAG	1 cut(s)	453
BpuMI	CCSGG	1 cut(s)	888
BsaBI	GATNNNNATC	1 cut(s)	788
BsaHI	GRCGYC	1 cut(s)	436
BsaJI	CCNNGG	1 cut(s)	1131
BsaXI	ACNNNNNCTCC	6 cut(s)	115, 145, 367, 397, 466, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	893
Bse118I	RCCGGY	2 cut(s)	251, 1068
Bse3DI	GCAATG	3 cut(s)	778, 955, 1149
Bse8I	GATNNNNATC	1 cut(s)	788
BseBI	CCWGG	2 cut(s)	342, 993
BseDI	CCNNGG	1 cut(s)	1131
BseGI	GGATG	5 cut(s)	43, 160, 394, 1045, 1227
BseJI	GATNNNNATC	1 cut(s)	788
BseLI	CCNNNNNNNGG	1 cut(s)	893
BseMI	GCAATG	3 cut(s)	778, 955, 1149
BseMII	CTCAG	3 cut(s)	161, 327, 1178
BseRI	GAGGAG	5 cut(s)	136, 139, 142, 471, 1098
BseXI	GCAGC	6 cut(s)	181, 235, 253, 703, 1108, 1303
BseYI	CCCAGC	4 cut(s)	197, 287, 485, 1231
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	4 cut(s)	564, 1110, 1136, 1159
BshNI	GGYRCC	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	84
BsiSI	CCGG	3 cut(s)	252, 888, 1069
BslI	CCNNNNNNNGG	1 cut(s)	893
BsnI	GGCC	4 cut(s)	564, 1110, 1136, 1159
Bsp143I	GATC	8 cut(s)	47, 63, 81, 783, 789, 890, 1051, 1238
BspACI	CCGC	6 cut(s)	56, 87, 702, 753, 759, 1027
BspANI	GGCC	4 cut(s)	564, 1110, 1136, 1159
BspCNI	CTCAG	3 cut(s)	160, 328, 1177
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	1 cut(s)	437
BspMI	ACCTGC	1 cut(s)	987
BspPI	GGATC	3 cut(s)	55, 797, 898
BspT107I	GGYRCC	1 cut(s)	435
BsrDI	GCAATG	3 cut(s)	778, 955, 1149
BsrFI	RCCGGY	2 cut(s)	251, 1068
BssAI	RCCGGY	2 cut(s)	251, 1068
BssECI	CCNNGG	1 cut(s)	1131
BssMI	GATC	8 cut(s)	47, 63, 81, 783, 789, 890, 1051, 1238
BssNI	GRCGYC	1 cut(s)	436
Bst2UI	CCWGG	2 cut(s)	342, 993
Bst4CI	ACNGT	7 cut(s)	142, 413, 522, 611, 667, 1064, 1286
Bst6I	CTCTTC	2 cut(s)	113, 233
BstACI	GRCGYC	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	207, 763
BstDEI	CTNAG	4 cut(s)	147, 336, 648, 1164
BstF5I	GGATG	5 cut(s)	43, 160, 394, 1045, 1227
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	2 cut(s)	438, 580
BstKTI	GATC	8 cut(s)	50, 66, 84, 786, 792, 893, 1054, 1241
BstMBI	GATC	8 cut(s)	47, 63, 81, 783, 789, 890, 1051, 1238
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 433, 722
BstNI	CCWGG	2 cut(s)	342, 993
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	340, 886, 991
BstSFI	CTRYAG	2 cut(s)	316, 720
BstV1I	GCAGC	6 cut(s)	181, 235, 253, 703, 1108, 1303
BstX2I	RGATCY	1 cut(s)	783
BstYI	RGATCY	1 cut(s)	783
BsuI	GTATCC	2 cut(s)	294, 325
BsuRI	GGCC	4 cut(s)	564, 1110, 1136, 1159
BtrI	CACGTC	1 cut(s)	974
BtsCI	GGATG	5 cut(s)	43, 160, 394, 1045, 1227
BtsI	GCAGTG	2 cut(s)	735, 1137
BtsIMutI	CAGTG	4 cut(s)	735, 1137, 1244, 1291
BveI	ACCTGC	1 cut(s)	987
Cac8I	GCNNGC	2 cut(s)	207, 763
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	2 cut(s)	438, 580
Cfr10I	RCCGGY	2 cut(s)	251, 1068
Cfr13I	GGNCC	2 cut(s)	1109, 1158
CseI	GACGC	1 cut(s)	1298
Csp6I	GTAC	4 cut(s)	187, 409, 663, 1060
CspCI	CAANNNNNGTGG	2 cut(s)	955, 990
CviAII	CATG	5 cut(s)	32, 424, 638, 821, 1222
CviQI	GTAC	4 cut(s)	187, 409, 663, 1060
DdeI	CTNAG	4 cut(s)	147, 336, 648, 1164
DinI	GGCGCC	1 cut(s)	437
DpnI	GATC	8 cut(s)	49, 65, 83, 785, 791, 892, 1053, 1240
DpnII	GATC	8 cut(s)	47, 63, 81, 783, 789, 890, 1051, 1238
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	1134
Eam1104I	CTCTTC	2 cut(s)	113, 233
EarI	CTCTTC	2 cut(s)	113, 233
Eco147I	AGGCCT	1 cut(s)	564
Eco57I	CTGAAG	3 cut(s)	521, 527, 902
EcoRI	GAATTC	3 cut(s)	505, 526, 1147
EcoRII	CCWGG	2 cut(s)	340, 991
EgeI	GGCGCC	1 cut(s)	437
EheI	GGCGCC	1 cut(s)	437
FaeI	CATG	5 cut(s)	35, 427, 641, 824, 1225
FatI	CATG	5 cut(s)	31, 423, 637, 820, 1221
FauNDI	CATATG	1 cut(s)	930
FbaI	TGATCA	1 cut(s)	1051
Fnu4HI	GCNGC	7 cut(s)	56, 195, 249, 267, 717, 1122, 1317
FokI	GGATG	5 cut(s)	50, 167, 401, 1052, 1214
Fsp4HI	GCNGC	7 cut(s)	56, 195, 249, 267, 717, 1122, 1317
FspBI	CTAG	2 cut(s)	296, 627
GlaI	GCGC	2 cut(s)	437, 579
GluI	GCNGC	7 cut(s)	56, 195, 249, 267, 717, 1122, 1317
GsaI	CCCAGC	4 cut(s)	201, 291, 489, 1235
GsuI	CTGGAG	1 cut(s)	1203
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	4 cut(s)	564, 1110, 1136, 1159
HapII	CCGG	3 cut(s)	252, 888, 1069
HgaI	GACGC	1 cut(s)	1298
HhaI	GCGC	2 cut(s)	438, 580
Hin1I	GRCGYC	1 cut(s)	436
Hin1II	CATG	5 cut(s)	35, 427, 641, 824, 1225
Hin6I	GCGC	2 cut(s)	436, 578
HinP1I	GCGC	2 cut(s)	436, 578
HindIII	AAGCTT	1 cut(s)	462
HinfI	GANTC	3 cut(s)	547, 934, 1271
HpaII	CCGG	3 cut(s)	252, 888, 1069
HphI	GGTGA	5 cut(s)	101, 110, 876, 1210, 1233
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	6 cut(s)	171, 511, 546, 845, 1056, 1167
Hpy188III	TCNNGA	5 cut(s)	19, 447, 638, 787, 1049
Hpy8I	GTNNAC	1 cut(s)	138
Hpy99I	CGWCG	2 cut(s)	55, 64
HpyAV	CCTTC	8 cut(s)	16, 38, 339, 551, 575, 631, 699, 738
HpyCH4III	ACNGT	7 cut(s)	142, 413, 522, 611, 667, 1064, 1286
HpyCH4IV	ACGT	1 cut(s)	973
HpyCH4V	TGCA	9 cut(s)	427, 671, 771, 813, 948, 1032, 1142, 1199, 1252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 433, 722
HpyF3I	CTNAG	4 cut(s)	147, 336, 648, 1164
HpySE526I	ACGT	1 cut(s)	973
Hsp92I	GRCGYC	1 cut(s)	436
Hsp92II	CATG	5 cut(s)	35, 427, 641, 824, 1225
HspAI	GCGC	2 cut(s)	436, 578
KasI	GGCGCC	1 cut(s)	435
Ksp22I	TGATCA	1 cut(s)	1051
Kzo9I	GATC	8 cut(s)	47, 63, 81, 783, 789, 890, 1051, 1238
LmnI	GCTCC	2 cut(s)	163, 214
Lsp1109I	GCAGC	6 cut(s)	181, 235, 253, 703, 1108, 1303
LweI	GCATC	2 cut(s)	175, 1239
MaeI	CTAG	2 cut(s)	296, 627
MaeII	ACGT	1 cut(s)	973
MaeIII	GTNAC	6 cut(s)	472, 642, 706, 1064, 1114, 1286
MalI	GATC	8 cut(s)	49, 65, 83, 785, 791, 892, 1053, 1240
MboI	GATC	8 cut(s)	47, 63, 81, 783, 789, 890, 1051, 1238
MboII	GAAGA	7 cut(s)	130, 250, 366, 514, 908, 992, 1037
MflI	RGATCY	1 cut(s)	783
MluCI	AATT	5 cut(s)	505, 526, 829, 943, 1147
Mly113I	GGCGCC	1 cut(s)	436
MmeI	TCCRAC	2 cut(s)	132, 141
MslI	CAYNNNNRTG	2 cut(s)	36, 1142
MspA1I	CMGCKG	2 cut(s)	704, 1330
MspI	CCGG	3 cut(s)	252, 888, 1069
MspR9I	CCNGG	3 cut(s)	342, 888, 993
MvaI	CCWGG	2 cut(s)	342, 993
MwoI	GCNNNNNNNGC	3 cut(s)	172, 433, 722
NarI	GGCGCC	1 cut(s)	436
NciI	CCSGG	1 cut(s)	888
NdeI	CATATG	1 cut(s)	930
NdeII	GATC	8 cut(s)	47, 63, 81, 783, 789, 890, 1051, 1238
NlaIII	CATG	5 cut(s)	35, 427, 641, 824, 1225
NlaIV	GGNNCC	1 cut(s)	437
NmeAIII	GCCGAG	2 cut(s)	1112, 1135
NmuCI	GTSAC	3 cut(s)	472, 1064, 1286
NspI	RCATGY	1 cut(s)	427
PagI	TCATGA	1 cut(s)	637
PaqCI	CACCTGC	1 cut(s)	987
PceI	AGGCCT	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	2 cut(s)	56, 59
PfeI	GAWTC	3 cut(s)	547, 934, 1271
PkrI	GCNGC	7 cut(s)	57, 196, 250, 268, 718, 1123, 1318
Ple19I	CGATCG	1 cut(s)	84
PluTI	GGCGCC	1 cut(s)	439
PsiI	TTATAA	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	340, 991
PspFI	CCCAGC	4 cut(s)	197, 287, 485, 1231
PspGI	CCWGG	2 cut(s)	340, 991
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	2 cut(s)	1109, 1158
PsrI	GAACNNNNNNTAC	2 cut(s)	691, 723
PsuI	RGATCY	1 cut(s)	783
PvuI	CGATCG	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	1330
RsaI	GTAC	4 cut(s)	188, 410, 664, 1061
RsaNI	GTAC	4 cut(s)	187, 409, 663, 1060
RseI	CAYNNNNRTG	2 cut(s)	36, 1142
SatI	GCNGC	7 cut(s)	56, 195, 249, 267, 717, 1122, 1317
Sau3AI	GATC	8 cut(s)	47, 63, 81, 783, 789, 890, 1051, 1238
Sau96I	GGNCC	2 cut(s)	1109, 1158
ScaI	AGTACT	2 cut(s)	410, 1061
ScrFI	CCNGG	3 cut(s)	342, 888, 993
SfaNI	GCATC	2 cut(s)	175, 1239
SfcI	CTRYAG	2 cut(s)	316, 720
SfoI	GGCGCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	2 cut(s)	36, 1142
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	5 cut(s)	505, 526, 829, 943, 1147
SseBI	AGGCCT	1 cut(s)	564
SsiI	CCGC	6 cut(s)	56, 87, 702, 753, 759, 1027
SspDI	GGCGCC	1 cut(s)	435
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	2 cut(s)	296, 627
StuI	AGGCCT	1 cut(s)	564
StyD4I	CCNGG	3 cut(s)	340, 886, 991
TaaI	ACNGT	7 cut(s)	142, 413, 522, 611, 667, 1064, 1286
TaiI	ACGT	1 cut(s)	976
TaqI	TCGA	3 cut(s)	62, 312, 613
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	5 cut(s)	505, 526, 829, 943, 1147
TatI	WGTACW	4 cut(s)	186, 408, 662, 1059
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	3 cut(s)	547, 934, 1271
TscAI	CASTG	4 cut(s)	742, 1144, 1251, 1291
TseFI	GTSAC	3 cut(s)	472, 1064, 1286
TseI	GCWGC	6 cut(s)	194, 248, 266, 716, 1121, 1316
Tsp45I	GTSAC	3 cut(s)	472, 1064, 1286
TspDTI	ATGAA	6 cut(s)	17, 57, 681, 1160, 1275, 1338
TspRI	CASTG	4 cut(s)	742, 1144, 1251, 1291
XapI	RAATTY	3 cut(s)	505, 526, 1147
XceI	RCATGY	1 cut(s)	427
XspI	CTAG	2 cut(s)	296, 627
ZrmI	AGTACT	2 cut(s)	410, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.