AT2G46330

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017881
Physical Location & Seq
Reverse (-)
19018264 .. 19019364
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46330.1

Sequence Viewer

Length: 222 bp
ATGGCGTCGAGAAACTCCGTCACCGGATTCGCGTTGTTCAGTTTTGTATTCGCCGTCATCTTATCTCTCGCCGGCGCTCAATCCCTGGCTCCAGCTCCTGCTCCCACCAGCGATGGAACATCGATAGATCAAGGGATAGCGTATTTGCTAATGGTGGTGGCGTTAGTGCTGACTTACCTAATTCATCCTCTTGATGCTTCTTCTTCCTACTCCTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

73

Amino Acids

7.6

Weight (kDa)

4.41

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 30 - 62 1.2e-18 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46330 AT2G46330 AT3G61640
fragaria_vesca FvH4_1g05040
malus_domestica MD02G1048700.v1.1 MD15G1187000.v1.1
prunus_persica Prupe.7G229500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0090651
rosa_multiflora Rmu_sc0003952.1_g000006 Rmu_sc0016852.1_g000009
rosa_roxburghii Rroxscaffold_2G00150910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 5
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AlwNI CAGNNNCTG 1 cut(s) 98
AspLEI GCGC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 13
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 75
Bsa29I ATCGAT 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 71
BseBI CCWGG 1 cut(s) 86
BseCI ATCGAT 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 32
BshVI ATCGAT 1 cut(s) 122
BsiSI CCGG 2 cut(s) 24, 72
Bsp143I GATC 1 cut(s) 127
BspDI ATCGAT 1 cut(s) 122
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 127
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 73
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstUI CGCG 1 cut(s) 32
Bsu15I ATCGAT 1 cut(s) 122
BsuTUI ATCGAT 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 98
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 122
CviJI RGCY 2 cut(s) 89, 95
CviKI_1 RGCY 2 cut(s) 89, 95
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 84
FokI GGATG 1 cut(s) 171
GlaI GCGC 1 cut(s) 76
GsuI CTGGAG 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 78
HapII CCGG 2 cut(s) 24, 72
HhaI GCGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 1 cut(s) 27
HpaII CCGG 2 cut(s) 24, 72
HphI GGTGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 9, 191
Hpy99I CGWCG 1 cut(s) 10
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 75
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 3 cut(s) 94, 100, 106
LpnPI CCDG 7 cut(s) 37, 71, 85, 98, 105, 111, 121
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 3 cut(s) 192, 195, 208
MluCI AATT 1 cut(s) 180
MnlI CCTC 1 cut(s) 198
MreI CGCCGGCG 1 cut(s) 71
MroNI GCCGGC 1 cut(s) 71
MspI CCGG 2 cut(s) 24, 72
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 32
NaeI GCCGGC 1 cut(s) 73
NdeII GATC 1 cut(s) 127
NgoMIV GCCGGC 1 cut(s) 71
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 19
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 98
Sau3AI GATC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 86
SetI ASST 2 cut(s) 97, 180
SfaNI GCATC 1 cut(s) 184
SgrAI CRCCGGYG 1 cut(s) 71
Sse9I AATT 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 84
TaqI TCGA 2 cut(s) 8, 122
TasI AATT 1 cut(s) 180
TfiI GAWTC 1 cut(s) 27
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.