Rroxscaffold_2G00150910

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017881
Physical Location & Seq
Reverse (-)
88271647 .. 88271927
281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150910.1

Sequence Viewer

Length: 186 bp
ATGAACTCCTTCAGATCTTGCTGCGCTCTCCCAATTATTGGGTTCATGTTCATGGCCCTGTTGAGCCTCAGCTATGGTCAAGAAGCCCCAGCTCCTTCTCCGACCAGCGATGGTGCGGCTATAGATCAAGGAATTGCTTACATCCTTTTGGTGCTGGCTTTGGCGATGACATACCTATTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

61

Amino Acids

6.48

Weight (kDa)

4.54

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 29 - 61 1.4e-16 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46330 AT2G46330 AT3G61640
fragaria_vesca FvH4_1g05040
malus_domestica MD02G1048700.v1.1 MD15G1187000.v1.1
prunus_persica Prupe.7G229500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0090651
rosa_multiflora Rmu_sc0003952.1_g000006 Rmu_sc0016852.1_g000009
rosa_roxburghii Rroxscaffold_2G00150910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 38
AciI CCGC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 72, 92
AluI AGCT 2 cut(s) 72, 92
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 21
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 55
BbvCI CCTCAGC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 8
BccI CCATC 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 120
BglII AGATCT 1 cut(s) 14
BisI GCNGC 2 cut(s) 22, 117
BlsI GCNGC 2 cut(s) 23, 118
BmgT120I GGNCC 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 8
BseYI CCCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 38
BsnI GGCC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 14, 124
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 81
BssMI GATC 2 cut(s) 14, 124
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 2 cut(s) 17, 127
BstMBI GATC 2 cut(s) 14, 124
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 1 cut(s) 56
BtgZI GCGATG 2 cut(s) 123, 179
BtsCI GGATG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 2 cut(s) 46, 52
CviJI RGCY 7 cut(s) 56, 66, 72, 86, 92, 119, 158
CviKI_1 RGCY 7 cut(s) 56, 66, 72, 86, 92, 119, 158
DdeI CTNAG 1 cut(s) 68
DpnI GATC 2 cut(s) 16, 126
DpnII GATC 2 cut(s) 14, 124
FaeI CATG 2 cut(s) 49, 55
FaiI YATR 5 cut(s) 47, 53, 75, 122, 172
FatI CATG 2 cut(s) 45, 51
Fnu4HI GCNGC 2 cut(s) 22, 117
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 22, 117
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 22, 117
GsaI CCCAGC 1 cut(s) 92
HaeIII GGCC 1 cut(s) 56
HhaI GCGC 1 cut(s) 26
Hin1II CATG 2 cut(s) 49, 55
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 14, 102
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 19, 105
HpyCH4V TGCA 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 68
Hsp92II CATG 2 cut(s) 49, 55
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 2 cut(s) 14, 124
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 4 cut(s) 71, 102, 118, 140
Lsp1109I GCAGC 1 cut(s) 8
MalI GATC 2 cut(s) 16, 126
MboI GATC 2 cut(s) 14, 124
MflI RGATCY 1 cut(s) 14
MluCI AATT 2 cut(s) 33, 132
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 1 cut(s) 77
MroXI GAANNNNTTC 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 50
NdeII GATC 2 cut(s) 14, 124
NlaIII CATG 2 cut(s) 49, 55
PdmI GAANNNNTTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 38
PkrI GCNGC 2 cut(s) 23, 118
PspFI CCCAGC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 50
SatI GCNGC 2 cut(s) 22, 117
Sau3AI GATC 2 cut(s) 14, 124
Sau96I GGNCC 1 cut(s) 55
SetI ASST 3 cut(s) 74, 94, 177
SfcI CTRYAG 1 cut(s) 120
SgeI CNNG 9 cut(s) 30, 58, 64, 70, 92, 101, 117, 140, 167
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 2 cut(s) 33, 132
SsiI CCGC 1 cut(s) 116
TasI AATT 2 cut(s) 33, 132
TauI GCSGC 1 cut(s) 119
TseI GCWGC 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 17, 34, 40
Van91I CCANNNNNTGG 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.