Rmu_sc0003952.1_g000006

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003952.1
OG0017881
Physical Location & Seq
Forward (+)
15734 .. 16404
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003952.1_g000006.1.cds

Sequence Viewer

Length: 300 bp
atggcaactgttgcttcctcattgagcctccaccctctagggccttccgagcccgaatccgagtcaataagccgccgatccggagtcaaaaaagctcgcgtcaagaccgcgatgaactccttcagatcttgctgcgctctcccaattattgggttcatgttcatggccctgttgagcctcagctatggtcaagaagcctccccagctccttctccgaccagcgatggtgcggctatagatcaaggaattgcttacatccttttggtgctggctttggcgatgacatatctattgcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

99

Amino Acids

10.42

Weight (kDa)

7.82

Isoelectric Point (pI)

64.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46330 AT2G46330 AT3G61640
fragaria_vesca FvH4_1g05040
malus_domestica MD02G1048700.v1.1 MD15G1187000.v1.1
prunus_persica Prupe.7G229500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0090651
rosa_multiflora Rmu_sc0003952.1_g000006 Rmu_sc0016852.1_g000009
rosa_roxburghii Rroxscaffold_2G00150910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 149
AccII CGCG 2 cut(s) 99, 110
AccIII TCCGGA 1 cut(s) 80
AciI CCGC 3 cut(s) 73, 108, 230
AclWI GGATC 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 149
AluBI AGCT 3 cut(s) 95, 183, 206
AluI AGCT 3 cut(s) 95, 183, 206
AlwI GGATC 1 cut(s) 72
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 2 cut(s) 41, 165
ApeKI GCWGC 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 41, 166
BanII GRGCYC 1 cut(s) 54
BbvCI CCTCAGC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 218
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 234
BglII AGATCT 1 cut(s) 125
BisI GCNGC 3 cut(s) 73, 133, 231
BlsI GCNGC 3 cut(s) 74, 134, 232
BmgT120I GGNCC 2 cut(s) 41, 166
Bpu10I CCTNAGC 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseAI TCCGGA 1 cut(s) 80
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 202
Bsh1236I CGCG 2 cut(s) 99, 110
BshFI GGCC 2 cut(s) 43, 167
BsiSI CCGG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 149
BsnI GGCC 2 cut(s) 43, 167
Bsp1286I GDGCHC 1 cut(s) 54
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 3 cut(s) 77, 125, 238
BspACI CCGC 3 cut(s) 73, 108, 230
BspANI GGCC 2 cut(s) 43, 167
BspCNI CTCAG 1 cut(s) 192
BspEI TCCGGA 1 cut(s) 80
BspFNI CGCG 2 cut(s) 99, 110
BspPI GGATC 1 cut(s) 72
BssMI GATC 3 cut(s) 77, 125, 238
Bst4CI ACNGT 1 cut(s) 10
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 97, 270
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 2 cut(s) 99, 110
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 80, 128, 241
BstMBI GATC 3 cut(s) 77, 125, 238
BstMWI GCNNNNNNNGC 3 cut(s) 11, 49, 203
BstSFI CTRYAG 1 cut(s) 234
BstUI CGCG 2 cut(s) 99, 110
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuRI GGCC 2 cut(s) 43, 167
BtgZI GCGATG 3 cut(s) 125, 237, 293
BtsCI GGATG 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 97, 270
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 41, 166
CseI GACGC 1 cut(s) 88
CviAII CATG 2 cut(s) 157, 163
DdeI CTNAG 1 cut(s) 179
DpnI GATC 3 cut(s) 79, 127, 240
DpnII GATC 3 cut(s) 77, 125, 238
Eco24I GRGCYC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 2 cut(s) 160, 166
FaiI YATR 5 cut(s) 158, 164, 186, 236, 286
FatI CATG 2 cut(s) 156, 162
Fnu4HI GCNGC 3 cut(s) 73, 133, 231
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 3 cut(s) 73, 133, 231
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 136
GluI GCNGC 3 cut(s) 73, 133, 231
GsaI CCCAGC 1 cut(s) 206
HaeIII GGCC 2 cut(s) 43, 167
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 137
Hin1II CATG 2 cut(s) 160, 166
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 3 cut(s) 56, 62, 84
HpaII CCGG 1 cut(s) 81
Hpy188I TCNGA 4 cut(s) 49, 61, 125, 216
Hpy188III TCNNGA 3 cut(s) 81, 103, 191
HpyAV CCTTC 3 cut(s) 54, 130, 219
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 49, 203
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 2 cut(s) 160, 166
HspAI GCGC 1 cut(s) 135
Kpn2I TCCGGA 1 cut(s) 80
Kzo9I GATC 3 cut(s) 77, 125, 238
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 5 cut(s) 94, 182, 216, 232, 254
Lsp1109I GCAGC 1 cut(s) 119
MaeI CTAG 1 cut(s) 38
MalI GATC 3 cut(s) 79, 127, 240
MboI GATC 3 cut(s) 77, 125, 238
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 2 cut(s) 144, 246
MlyI GAGTC 2 cut(s) 71, 93
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 5 cut(s) 28, 38, 45, 188, 208
MroI TCCGGA 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 1 cut(s) 81
MvnI CGCG 2 cut(s) 99, 110
MwoI GCNNNNNNNGC 3 cut(s) 11, 49, 203
NdeII GATC 3 cut(s) 77, 125, 238
NlaIII CATG 2 cut(s) 160, 166
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 3 cut(s) 74, 134, 232
PleI GAGTC 2 cut(s) 70, 92
PpsI GAGTC 2 cut(s) 70, 92
PspFI CCCAGC 1 cut(s) 202
PspPI GGNCC 2 cut(s) 41, 166
PsuI RGATCY 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 161
SatI GCNGC 3 cut(s) 73, 133, 231
Sau3AI GATC 3 cut(s) 77, 125, 238
Sau96I GGNCC 2 cut(s) 41, 166
SchI GAGTC 2 cut(s) 71, 93
SduI GDGCHC 1 cut(s) 54
SetI ASST 3 cut(s) 97, 185, 208
SfcI CTRYAG 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 2 cut(s) 144, 246
SsiI CCGC 3 cut(s) 73, 108, 230
SspMI CTAG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 10
TasI AATT 2 cut(s) 144, 246
TauI GCSGC 2 cut(s) 75, 233
TfiI GAWTC 1 cut(s) 56
TseI GCWGC 1 cut(s) 132
TspDTI ATGAA 3 cut(s) 128, 145, 151
Van91I CCANNNNNTGG 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.