MD15G1187000.v1.1

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017881
Physical Location & Seq
Forward (+)
14752222 .. 14753019
798 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1187000.v1.1.491

Sequence Viewer

Length: 183 bp
ATGAACTCAATCAGATCCTCCGCCTTCCCAATCATCGGGTTCATGTTCATGGCGCTCCTCAGCCTCGGCTACGGCCAGCAGGCGCCAGCTCCTGCTCCCACCAGCTACGGAATGGCGATCGATCAGGGAATCGCTTACACGCTTATGATGGTGGCGCTTGCAATTACGTACCTCATGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

61

Amino Acids

6.45

Weight (kDa)

6.49

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 28 - 60 7e-16 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46330 AT2G46330 AT3G61640
fragaria_vesca FvH4_1g05040
malus_domestica MD02G1048700.v1.1 MD15G1187000.v1.1
prunus_persica Prupe.7G229500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0090651
rosa_multiflora Rmu_sc0003952.1_g000006 Rmu_sc0016852.1_g000009
rosa_roxburghii Rroxscaffold_2G00150910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 9
AcoI YGGCCR 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 35
AluBI AGCT 2 cut(s) 89, 105
AluI AGCT 2 cut(s) 89, 105
AlwI GGATC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 92
AoxI GGCC 1 cut(s) 73
AspLEI GCGC 3 cut(s) 55, 85, 157
BanI GGYRCC 1 cut(s) 82
BbvCI CCTCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 88
BfoI RGCGCY 3 cut(s) 56, 86, 158
BmiI GGNNCC 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 59
Bsa29I ATCGAT 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 82
BshVI ATCGAT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 75
Bsp143I GATC 3 cut(s) 14, 117, 121
BspACI CCGC 1 cut(s) 21
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 72
BspDI ATCGAT 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 3 cut(s) 14, 117, 121
BssNI GRCGYC 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 168
BstC8I GCNNGC 4 cut(s) 77, 81, 87, 159
BstDEI CTNAG 1 cut(s) 59
BstH2I RGCGCY 3 cut(s) 56, 86, 158
BstHHI GCGC 3 cut(s) 55, 85, 157
BstKTI GATC 3 cut(s) 17, 120, 124
BstMBI GATC 3 cut(s) 14, 117, 121
BstMCI CGRYCG 1 cut(s) 120
BstSNI TACGTA 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 1 cut(s) 75
BsuTUI ATCGAT 1 cut(s) 120
Cac8I GCNNGC 4 cut(s) 77, 81, 87, 159
CaiI CAGNNNCTG 1 cut(s) 92
CfoI GCGC 3 cut(s) 55, 85, 157
ClaI ATCGAT 1 cut(s) 120
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 43, 49, 175
CviJI RGCY 5 cut(s) 63, 69, 75, 89, 105
CviKI_1 RGCY 5 cut(s) 63, 69, 75, 89, 105
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 59
DinI GGCGCC 1 cut(s) 84
DpnI GATC 3 cut(s) 16, 119, 123
DpnII GATC 3 cut(s) 14, 117, 121
EaeI YGGCCR 1 cut(s) 73
EciI GGCGGA 1 cut(s) 10
Eco105I TACGTA 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 180
EgeI GGCGCC 1 cut(s) 84
EheI GGCGCC 1 cut(s) 84
FaeI CATG 3 cut(s) 46, 52, 178
FaiI YATR 4 cut(s) 44, 50, 146, 176
FatI CATG 3 cut(s) 42, 48, 174
GlaI GCGC 3 cut(s) 54, 84, 156
HaeII RGCGCY 3 cut(s) 56, 86, 158
HaeIII GGCC 1 cut(s) 75
HhaI GCGC 3 cut(s) 55, 85, 157
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 3 cut(s) 46, 52, 178
Hin6I GCGC 3 cut(s) 53, 83, 155
HinP1I GCGC 3 cut(s) 53, 83, 155
HinfI GANTC 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 161, 178
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 3 cut(s) 46, 52, 178
HspAI GCGC 3 cut(s) 53, 83, 155
KasI GGCGCC 1 cut(s) 82
Kzo9I GATC 3 cut(s) 14, 117, 121
LmnI GCTCC 3 cut(s) 60, 94, 100
LpnPI CCDG 6 cut(s) 65, 89, 99, 105, 110, 115
MaeII ACGT 1 cut(s) 167
MalI GATC 3 cut(s) 16, 119, 123
MboI GATC 3 cut(s) 14, 117, 121
MflI RGATCY 1 cut(s) 14
MluCI AATT 1 cut(s) 162
Mly113I GGCGCC 1 cut(s) 83
MnlI CCTC 4 cut(s) 28, 68, 74, 182
Mph1103I ATGCAT 1 cut(s) 180
MseI TTAA 1 cut(s) 181
MslI CAYNNNNRTG 2 cut(s) 47, 143
NarI GGCGCC 1 cut(s) 83
NdeII GATC 3 cut(s) 14, 117, 121
NlaIII CATG 3 cut(s) 46, 52, 178
NlaIV GGNNCC 1 cut(s) 84
NmeAIII GCCGAG 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 180
PfeI GAWTC 1 cut(s) 129
Ple19I CGATCG 1 cut(s) 120
PluTI GGCGCC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 84
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 14
PvuI CGATCG 1 cut(s) 120
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 2 cut(s) 47, 143
SaqAI TTAA 1 cut(s) 181
Sau3AI GATC 3 cut(s) 14, 117, 121
SetI ASST 4 cut(s) 91, 107, 170, 174
SfoI GGCGCC 1 cut(s) 84
SmiMI CAYNNNNRTG 2 cut(s) 47, 143
SnaBI TACGTA 1 cut(s) 168
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 21
SspDI GGCGCC 1 cut(s) 82
TaiI ACGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 162
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 1 cut(s) 181
Tru9I TTAA 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 17, 31, 37
TspGWI ACGGA 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.