Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012153

Physical Location & Seq

Genomic Coordinates Reverse (-)

19165274 .. 19166967

Gene Structure 1694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGACAGAAGGTGGAGAATATTCTCCGGCGATGATGTCAGCAGAGCCATTCTTGACCATGAAGAAGATGAAGAAGAGCAACCACAACAAGAACAATCAGAGAAGGTTTAGCGACGAGCAGATCAAGTCACTGGAGATGATGTTTGAGTCTGAGACAAGGCTTGAGCCAAGGAAGAAGGTTCAATTAGCTAGAGAGCTAGGGTTGCAGCCGAGGCAAGTGGCTATATGGTTTCAGAACAAGAGGGCTCGTTGGAAATCCAAGCAGCTCGAGACTGAGTACAACATTCTCAGACAAAACTACGACAACTTGGCTTCTCAGTTCGAGTCCTTAAAGAAAGAAAAACAAGCTTTAGTCTCTGAGTTGCAGAGGCTAAAAGAGGCGACGCAAAAGAAGACACAGGAGGAGGAAAGGCAGTGTAGTGGAGATCAAGCGGTGGTTGCTCTAAGCAGCACACATCATGAATCAGAAAACGAAGAGAACCGGAGGCGTAAACCGGAAGAGGTTAGACCGGAGATGGAGATGAAAGATGATAAGGGTCATCATGGGGTTATGTGTGATCATCATGATTATGAAGATGATGATAATGGTTATAGTAACAACATCAAGAGAGAGTATTTTGGTGGGTTTGAGGAAGAACCAGATCACTTAATGAACATTGTTGAACCAGCTGATAGTTGTTTGACATCATCTGATGATTGGAGAGGTTTCAAATCAGATACTACTACTCTCTTGGACCAATCCAGCAACAATTACCCTTGGCGGGATTTTTGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

258

Amino Acids

30.51

Weight (kDa)

5.52

Isoelectric Point (pI)

66.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 85	1.1e-16	Homeodomain
HALZ	PF02183	87 - 120	5.2e-13	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46680 AT2G46680 AT3G61890
fragaria_vesca	FvH4_7g17320
malus_domestica	MD00G1036300.v1.1 MD07G1156200.v1.1
prunus_persica	Prupe.2G194400_v2.0.a1
pyrus_communis	pycom01g11010 pycom07g15300
rosa_chinensis	RchiOBHm_Chr1g0360751
rosa_laevigata	RLG00000027788
rosa_multiflora	Rmu_ssc0000022.1_g000013
rosa_roxburghii	Rroxscaffold_4G00295850
rosa_rugosa	Rorug01G0281300
rosa_samantha	Rh1AG293400 Rh1BG257800 Rh1CG275800 Rh1DG287900
rosa_wichuraiana	Rw1G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	431, 760
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	760
AgsI	TTSAA	3 cut(s)	182, 662, 709
AluBI	AGCT	5 cut(s)	188, 196, 265, 347, 668
AluI	AGCT	5 cut(s)	188, 196, 265, 347, 668
Alw26I	GTCTC	3 cut(s)	146, 263, 358
Ama87I	CYCGRG	1 cut(s)	266
ApeKI	GCWGC	3 cut(s)	205, 262, 447
AspS9I	GGNCC	1 cut(s)	733
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	733
BanII	GRGCYC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	398
BbvI	GCAGC	3 cut(s)	217, 274, 459
BccI	CCATC	1 cut(s)	508
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	3 cut(s)	146, 263, 358
BfaI	CTAG	2 cut(s)	189, 197
BisI	GCNGC	3 cut(s)	206, 263, 448
BlsI	GCNGC	3 cut(s)	207, 264, 449
Bme18I	GGWCC	1 cut(s)	733
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	733
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	167, 209, 755
BsaWI	WCCGGW	3 cut(s)	480, 493, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	760
Bse1I	ACTGG	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	167, 209, 755
BseLI	CCNNNNNNNGG	1 cut(s)	760
BseMII	CTCAG	5 cut(s)	141, 264, 301, 329, 348
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	3 cut(s)	217, 274, 459
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	4 cut(s)	26, 481, 494, 509
BslI	CCNNNNNNNGG	1 cut(s)	760
BsmAI	GTCTC	3 cut(s)	146, 263, 358
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	4 cut(s)	120, 424, 556, 640
BspACI	CCGC	2 cut(s)	431, 760
BspCNI	CTCAG	5 cut(s)	142, 265, 300, 328, 349
BspHI	TCATGA	3 cut(s)	457, 562, 773
BspQI	GCTCTTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	3 cut(s)	167, 209, 755
BssMI	GATC	4 cut(s)	120, 424, 556, 640
BssT1I	CCWWGG	2 cut(s)	167, 755
Bst6I	CTCTTC	3 cut(s)	68, 468, 492
BstDEI	CTNAG	6 cut(s)	150, 273, 287, 315, 357, 443
BstKTI	GATC	4 cut(s)	123, 427, 559, 643
BstMAI	GTCTC	3 cut(s)	146, 263, 358
BstMBI	GATC	4 cut(s)	120, 424, 556, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	202, 211, 437
BstV1I	GCAGC	3 cut(s)	217, 274, 459
BstV2I	GAAGAC	1 cut(s)	398
BtgZI	GCGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	128, 419
CciI	TCATGA	3 cut(s)	457, 562, 773
Cfr13I	GGNCC	1 cut(s)	733
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	5 cut(s)	58, 458, 542, 563, 774
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	6 cut(s)	150, 273, 287, 315, 357, 443
DpnI	GATC	4 cut(s)	122, 426, 558, 642
DpnII	GATC	4 cut(s)	120, 424, 556, 640
Eam1104I	CTCTTC	3 cut(s)	68, 468, 492
EarI	CTCTTC	3 cut(s)	68, 468, 492
Eco130I	CCWWGG	2 cut(s)	167, 755
Eco24I	GRGCYC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	733
Eco88I	CYCGRG	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	167, 755
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	167, 755
FaeI	CATG	5 cut(s)	61, 461, 545, 566, 777
FatI	CATG	5 cut(s)	57, 457, 541, 562, 773
FauI	CCCGC	1 cut(s)	753
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	3 cut(s)	206, 263, 448
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	3 cut(s)	206, 263, 448
FspBI	CTAG	2 cut(s)	189, 197
GluI	GCNGC	3 cut(s)	206, 263, 448
GsuI	CTGGAG	1 cut(s)	152
HapII	CCGG	4 cut(s)	26, 481, 494, 509
HgaI	GACGC	1 cut(s)	391
Hin1II	CATG	5 cut(s)	61, 461, 545, 566, 777
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	3 cut(s)	146, 323, 461
HpaII	CCGG	4 cut(s)	26, 481, 494, 509
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	8 cut(s)	99, 151, 234, 290, 358, 466, 691, 715
Hpy188III	TCNNGA	6 cut(s)	52, 268, 458, 563, 604, 774
Hpy8I	GTNNAC	1 cut(s)	491
Hpy99I	CGWCG	2 cut(s)	116, 385
HpyAV	CCTTC	2 cut(s)	96, 169
HpyCH4V	TGCA	2 cut(s)	205, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	202, 211, 437
HpyF3I	CTNAG	6 cut(s)	150, 273, 287, 315, 357, 443
Hsp92II	CATG	5 cut(s)	61, 461, 545, 566, 777
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	4 cut(s)	120, 424, 556, 640
LguI	GCTCTTC	1 cut(s)	68
LpnPI	CCDG	9 cut(s)	39, 116, 383, 494, 507, 522, 651, 678, 754
Lsp1109I	GCAGC	3 cut(s)	217, 274, 459
MaeI	CTAG	2 cut(s)	189, 197
MaeIII	GTNAC	2 cut(s)	126, 593
MalI	GATC	4 cut(s)	122, 426, 558, 642
MboI	GATC	4 cut(s)	120, 424, 556, 640
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	2 cut(s)	182, 748
MlyI	GAGTC	2 cut(s)	155, 332
MmeI	TCCRAC	1 cut(s)	230
MseI	TTAA	2 cut(s)	329, 647
MslI	CAYNNNNRTG	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	668
MspI	CCGG	4 cut(s)	26, 481, 494, 509
MwoI	GCNNNNNNNGC	3 cut(s)	202, 211, 437
NdeII	GATC	4 cut(s)	120, 424, 556, 640
NlaIII	CATG	5 cut(s)	61, 461, 545, 566, 777
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	126
PaeR7I	CTCGAG	1 cut(s)	266
PagI	TCATGA	3 cut(s)	457, 562, 773
PciSI	GCTCTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	207, 264, 449
PleI	GAGTC	2 cut(s)	154, 331
PpsI	GAGTC	2 cut(s)	154, 331
PspPI	GGNCC	1 cut(s)	733
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	567
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	329, 647
SatI	GCNGC	3 cut(s)	206, 263, 448
Sau3AI	GATC	4 cut(s)	120, 424, 556, 640
Sau96I	GGNCC	1 cut(s)	733
SchI	GAGTC	2 cut(s)	155, 332
SduI	GDGCHC	1 cut(s)	247
Sfr274I	CTCGAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	733
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	2 cut(s)	161, 266
SmoI	CTYRAG	2 cut(s)	161, 266
Sse9I	AATT	2 cut(s)	182, 748
SsiI	CCGC	2 cut(s)	431, 760
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	2 cut(s)	189, 197
StyI	CCWWGG	2 cut(s)	167, 755
TaqI	TCGA	2 cut(s)	267, 321
TasI	AATT	2 cut(s)	182, 748
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	329, 647
Tru9I	TTAA	2 cut(s)	329, 647
TscAI	CASTG	2 cut(s)	135, 419
TseFI	GTSAC	1 cut(s)	126
TseI	GCWGC	3 cut(s)	205, 262, 447
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	6 cut(s)	74, 83, 474, 536, 585, 665
TspRI	CASTG	2 cut(s)	135, 419
VpaK11BI	GGWCC	1 cut(s)	733
XhoI	CTCGAG	1 cut(s)	266
XspI	CTAG	2 cut(s)	189, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.