Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0012153

Physical Location & Seq

Genomic Coordinates Reverse (-)

17564663 .. 17565659

Gene Structure 997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCTCGATCCGATCGAATATTCGAGTCCCTCGGCAGAAGATCATGAGACTTTCAGCTGTATGAGCTCACCGAGAGCTGCTACTACAAGGAGGAAGAACAACAAGAACAAGAAGAGGTTTAGTGATGAGCAGATTAGGTCACTGGAGTCCATCTTTGAGTCTGAGTCGAGGCTTGAGCCGAGGAAGAAGATGCAGTTGGCCAAAGAGCTAGGGTTGCAACCGAGGCAGGTTTCTATTTGGTTTCAGAACAAGAGAGCCAGATGGAAGTCCAAGCAGCTTGAGAGAGAATACAGCATACTGAGAGCCAATTACAACAACTTGGCATCAAAGTTTGAAGCTATGAAGAAAGAAAAGCAGGCCTTGGTTGTTCAGGTTCAGAAGCTGAATAATCTGATGATGCAAAGGGAGAATCGTGGGGAAGATGTAGCTATGAACAATGGCATTGATGGTGAGTCAGATAATGGAGATGCCATCATTTCTGAATCTGATCAGGTGAAGCTTGATTTTTCAGTGGAAAAATCAGAGCAAGGAGAACTTGGGGTGCTGTCAGATGATGATAGCAGCATAAAACCAGAGTACTTTGGACTGGAAGATGAATCGAACCTTGTTAACTTAGTGGAGTATGTAGATGATTCCTTAACATCAGTTGAGGATTGGGGGAAATTGAATTCTAATGGTCTTTTTGATGAATCAACTGGTGATTATCAGTGGTGGGACTTCTGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

243

Amino Acids

27.98

Weight (kDa)

4.79

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	35 - 89	1.7e-17	Homeodomain
HALZ	PF02183	91 - 132	8.8e-16	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46680 AT2G46680 AT3G61890
fragaria_vesca	FvH4_7g17320
malus_domestica	MD00G1036300.v1.1 MD07G1156200.v1.1
prunus_persica	Prupe.2G194400_v2.0.a1
pyrus_communis	pycom01g11010 pycom07g15300
rosa_chinensis	RchiOBHm_Chr1g0360751
rosa_laevigata	RLG00000027788
rosa_multiflora	Rmu_ssc0000022.1_g000013
rosa_roxburghii	Rroxscaffold_4G00295850
rosa_rugosa	Rorug01G0281300
rosa_samantha	Rh1AG293400 Rh1BG257800 Rh1CG275800 Rh1DG287900
rosa_wichuraiana	Rw1G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	2
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	667
AfaI	GTAC	1 cut(s)	578
AgsI	TTSAA	2 cut(s)	335, 667
AhdI	GACNNNNNGTC	1 cut(s)	721
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	9 cut(s)	57, 66, 77, 208, 277, 338, 382, 428, 499
AluI	AGCT	9 cut(s)	57, 66, 77, 208, 277, 338, 382, 428, 499
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	2
AlwNI	CAGNNNCTG	1 cut(s)	382
AoxI	GGCC	2 cut(s)	198, 357
ApeKI	GCWGC	3 cut(s)	77, 274, 561
ApoI	RAATTY	1 cut(s)	667
AsuHPI	GGTGA	4 cut(s)	60, 461, 505, 710
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	64, 286, 573
BccI	CCATC	4 cut(s)	158, 255, 440, 479
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	3 cut(s)	78, 275, 562
BlsI	GCNGC	3 cut(s)	79, 276, 563
BmcAI	AGTACT	1 cut(s)	578
BmeRI	GACNNNNNGTC	1 cut(s)	721
BmsI	GCATC	4 cut(s)	180, 332, 387, 457
BpmI	CTGGAG	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	194, 299
BsaJI	CCNNGG	4 cut(s)	30, 179, 221, 360
Bse1I	ACTGG	3 cut(s)	147, 591, 700
BseDI	CCNNGG	4 cut(s)	30, 179, 221, 360
BseMII	CTCAG	2 cut(s)	153, 290
BseNI	ACTGG	3 cut(s)	147, 591, 700
BseXI	GCAGC	3 cut(s)	64, 286, 573
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	200, 359
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	200, 359
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	4 cut(s)	7, 12, 40, 487
BspANI	GGCC	2 cut(s)	200, 359
BspCNI	CTCAG	2 cut(s)	154, 291
BspHI	TCATGA	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	2
BsrI	ACTGG	3 cut(s)	147, 591, 700
BssECI	CCNNGG	4 cut(s)	30, 179, 221, 360
BssMI	GATC	4 cut(s)	7, 12, 40, 487
BssT1I	CCWWGG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	162, 299, 613
BstKTI	GATC	4 cut(s)	10, 15, 43, 490
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	4 cut(s)	7, 12, 40, 487
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 214, 223
BstV1I	GCAGC	3 cut(s)	64, 286, 573
BsuRI	GGCC	2 cut(s)	200, 359
BtsIMutI	CAGTG	3 cut(s)	140, 516, 713
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	382
CciI	TCATGA	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	1 cut(s)	44
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	3 cut(s)	162, 299, 613
DpnI	GATC	4 cut(s)	9, 14, 42, 489
DpnII	GATC	4 cut(s)	7, 12, 40, 487
DriI	GACNNNNNGTC	1 cut(s)	721
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	107
Eam1105I	GACNNNNNGTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	1 cut(s)	47
FaiI	YATR	7 cut(s)	45, 62, 296, 341, 431, 566, 624
FalI	AAGNNNNNCTT	4 cut(s)	344, 376, 519, 551
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	78, 275, 562
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	78, 275, 562
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	3 cut(s)	78, 275, 562
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	200, 359
Hin1II	CATG	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	497
HpaI	GTTAAC	1 cut(s)	610
HphI	GGTGA	4 cut(s)	60, 461, 505, 710
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188III	TCNNGA	2 cut(s)	44, 726
Hpy8I	GTNNAC	1 cut(s)	610
HpyCH4V	TGCA	3 cut(s)	193, 217, 400
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 214, 223
HpyF3I	CTNAG	3 cut(s)	162, 299, 613
Hsp92II	CATG	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	487
KspAI	GTTAAC	1 cut(s)	610
Kzo9I	GATC	4 cut(s)	7, 12, 40, 487
Lsp1109I	GCAGC	3 cut(s)	64, 286, 573
LweI	GCATC	4 cut(s)	180, 332, 387, 457
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	4 cut(s)	9, 14, 42, 489
MboI	GATC	4 cut(s)	7, 12, 40, 487
MboII	GAAGA	8 cut(s)	50, 106, 124, 196, 199, 355, 431, 602
MhlI	GDGCHC	1 cut(s)	68
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	3 cut(s)	307, 662, 667
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	5 cut(s)	34, 155, 167, 173, 461
MnlI	CCTC	7 cut(s)	40, 84, 108, 162, 174, 216, 643
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	2 cut(s)	609, 638
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	63, 214, 223
NdeII	GATC	4 cut(s)	7, 12, 40, 487
NlaIII	CATG	1 cut(s)	47
NmeAIII	GCCGAG	2 cut(s)	11, 204
NmuCI	GTSAC	1 cut(s)	138
PagI	TCATGA	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	5 cut(s)	409, 482, 596, 632, 689
PkrI	GCNGC	3 cut(s)	79, 276, 563
Ple19I	CGATCG	1 cut(s)	15
PleI	GAGTC	5 cut(s)	33, 154, 166, 172, 460
PpsI	GAGTC	5 cut(s)	33, 154, 166, 172, 460
Psp124BI	GAGCTC	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	382
PvuI	CGATCG	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	57
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	609, 638
SatI	GCNGC	3 cut(s)	78, 275, 562
Sau3AI	GATC	4 cut(s)	7, 12, 40, 487
ScaI	AGTACT	1 cut(s)	578
SchI	GAGTC	5 cut(s)	34, 155, 167, 173, 461
SduI	GDGCHC	1 cut(s)	68
SfaNI	GCATC	4 cut(s)	180, 332, 387, 457
SmlI	CTYRAG	2 cut(s)	173, 278
SmoI	CTYRAG	2 cut(s)	173, 278
Sse9I	AATT	3 cut(s)	307, 662, 667
SseBI	AGGCCT	1 cut(s)	359
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	68
StuI	AGGCCT	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	360
TaqI	TCGA	5 cut(s)	6, 15, 23, 167, 599
TasI	AATT	3 cut(s)	307, 662, 667
TatI	WGTACW	1 cut(s)	576
TfiI	GAWTC	5 cut(s)	409, 482, 596, 632, 689
Tru1I	TTAA	2 cut(s)	609, 638
Tru9I	TTAA	2 cut(s)	609, 638
TscAI	CASTG	3 cut(s)	147, 516, 713
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	3 cut(s)	77, 274, 561
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	4 cut(s)	356, 446, 609, 702
TspRI	CASTG	3 cut(s)	147, 516, 713
XapI	RAATTY	1 cut(s)	667
XspI	CTAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.