Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0012153

Physical Location & Seq

Genomic Coordinates Reverse (-)

11816732 .. 11817738

Gene Structure 1007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCTCGATAAAATCGAATATTCGAGTCCCTCAGCAGAAGATCATGAGACTTTCAGCTGCATGAGCCCACTGGGAGCTGCCACTACAAGGAGGAAGAACAACAAGAACAACAAGAGGTTCAGTGATGAGCAGATTAGGTCATTGGAGTCCATCTTTGAGTCTGAGTCGAGGCTTGAGCCGAGGAAGAAGATGCAGTTGGCCAAAGAGCTAGGGTTGCAACCTAAGCAGGTTGCTATTTGGTTTCAGAACAAGAGAGCTAGATGGAAGTCTAAGCAGCTCGAGAGAGACTACAGCAAATTGAGAGCCAATTACAACAACTTGGCATCAAAGTTTGAAGCTTTGAAGAAAGAAAAGCAGGCCCTGGTTGTTCAGGTGCAGAAGCTGAATAATCTGATGATGATGCAAAGGGAGAATTGTGGGGAAGATGTAGTTATGAACAATGGCATTGACGGTGAGTCAGATAACGGAGATGCCACCATTTCTGAATCTGATAAGGTGAAGCTTGATTTTTCAGTGGAAAAATCAGAGCAAGGAGGACTTGGGGTGCTGTCAGATGATGACAGCCGCATAAAAGCAGAGTACTTTGGACTGGAAGATGAACCAGACCTTGCGAACTTAGTGGAGTCTGCAGACGGTTCCTTGACATCAGCTGAGGATTGGGGGAAATTGAATTCTGATGGTCTTTTTGATGTTACGAGTGGTGATTATCAGTGGTGGGACTTCTGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

244

Amino Acids

27.69

Weight (kDa)

4.87

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	37 - 89	6.5e-17	Homeodomain
HALZ	PF02183	91 - 132	8.5e-16	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46680 AT2G46680 AT3G61890
fragaria_vesca	FvH4_7g17320
malus_domestica	MD00G1036300.v1.1 MD07G1156200.v1.1
prunus_persica	Prupe.2G194400_v2.0.a1
pyrus_communis	pycom01g11010 pycom07g15300
rosa_chinensis	RchiOBHm_Chr1g0360751
rosa_laevigata	RLG00000027788
rosa_multiflora	Rmu_ssc0000022.1_g000013
rosa_roxburghii	Rroxscaffold_4G00295850
rosa_rugosa	Rorug01G0281300
rosa_samantha	Rh1AG293400 Rh1BG257800 Rh1CG275800 Rh1DG287900
rosa_wichuraiana	Rw1G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	217
AciI	CCGC	1 cut(s)	565
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	670
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	335, 343, 670
AhdI	GACNNNNNGTC	2 cut(s)	454, 724
AjnI	CCWGG	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	9 cut(s)	57, 77, 208, 257, 277, 338, 382, 502, 650
AluI	AGCT	9 cut(s)	57, 77, 208, 257, 277, 338, 382, 502, 650
Alw26I	GTCTC	2 cut(s)	41, 279
AlwNI	CAGNNNCTG	2 cut(s)	361, 382
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	198, 357
ApeKI	GCWGC	3 cut(s)	57, 77, 274
ApoI	RAATTY	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	3 cut(s)	464, 508, 713
AvaI	CYCGRG	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	68
BbvCI	CCTCAGC	2 cut(s)	31, 651
BbvI	GCAGC	3 cut(s)	44, 64, 286
BccI	CCATC	3 cut(s)	158, 255, 671
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	41, 279
BfaI	CTAG	2 cut(s)	209, 258
BfmI	CTRYAG	2 cut(s)	289, 627
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	4 cut(s)	58, 78, 275, 565
BlsI	GCNGC	4 cut(s)	59, 79, 276, 566
BmcAI	AGTACT	1 cut(s)	581
Bme1390I	CCNGG	1 cut(s)	362
BmeRI	GACNNNNNGTC	2 cut(s)	454, 724
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	637
BmrFI	CCNGG	1 cut(s)	362
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	4 cut(s)	180, 332, 390, 460
BmuI	ACTGGG	1 cut(s)	80
Bpu10I	CCTNAGC	3 cut(s)	31, 222, 651
BpuEI	CTTGAG	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	179, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	75, 594
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	179, 360
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	3 cut(s)	45, 153, 642
BseNI	ACTGG	2 cut(s)	75, 594
BseXI	GCAGC	3 cut(s)	44, 64, 286
BsgI	GTGCAG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	200, 359
BsiHKCI	CYCGRG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	2 cut(s)	41, 279
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	200, 359
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	1 cut(s)	565
BspANI	GGCC	2 cut(s)	200, 359
BspCNI	CTCAG	3 cut(s)	44, 154, 643
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	637
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	75, 594
BssECI	CCNNGG	2 cut(s)	179, 360
BssMI	GATC	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	452, 635
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	6 cut(s)	31, 162, 222, 270, 616, 651
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	2 cut(s)	41, 279
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 214, 223
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	2 cut(s)	289, 627
BstV1I	GCAGC	3 cut(s)	44, 64, 286
BsuRI	GGCC	2 cut(s)	200, 359
BtsIMutI	CAGTG	4 cut(s)	68, 127, 519, 716
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	2 cut(s)	361, 382
CciI	TCATGA	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	2 cut(s)	44, 61
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	6 cut(s)	31, 162, 222, 270, 616, 651
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
DriI	GACNNNNNGTC	2 cut(s)	454, 724
EaeI	YGGCCR	1 cut(s)	198
Eam1105I	GACNNNNNGTC	2 cut(s)	454, 724
Eco24I	GRGCYC	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRI	GAATTC	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	2 cut(s)	47, 64
FaiI	YATR	4 cut(s)	45, 62, 434, 569
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	2 cut(s)	43, 60
Fnu4HI	GCNGC	4 cut(s)	58, 78, 275, 565
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	4 cut(s)	58, 78, 275, 565
FspBI	CTAG	2 cut(s)	209, 258
GluI	GCNGC	4 cut(s)	58, 78, 275, 565
HaeIII	GGCC	2 cut(s)	200, 359
Hin1II	CATG	2 cut(s)	47, 64
HindIII	AAGCTT	2 cut(s)	336, 500
HinfI	GANTC	7 cut(s)	25, 146, 158, 164, 455, 485, 623
HphI	GGTGA	3 cut(s)	464, 508, 713
Hpy188I	TCNGA	9 cut(s)	163, 246, 393, 460, 484, 490, 526, 553, 676
Hpy188III	TCNNGA	3 cut(s)	44, 280, 729
HpyCH4III	ACNGT	2 cut(s)	452, 635
HpyCH4V	TGCA	6 cut(s)	60, 193, 217, 376, 403, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 214, 223
HpyF3I	CTNAG	6 cut(s)	31, 162, 222, 270, 616, 651
Hsp92II	CATG	2 cut(s)	47, 64
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	9 cut(s)	56, 212, 341, 347, 356, 374, 575, 615, 709
Lsp1109I	GCAGC	3 cut(s)	44, 64, 286
LweI	GCATC	4 cut(s)	180, 332, 390, 460
MaeI	CTAG	2 cut(s)	209, 258
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	7 cut(s)	50, 106, 196, 199, 355, 434, 605
MhlI	GDGCHC	1 cut(s)	68
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	5 cut(s)	296, 307, 412, 665, 670
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	6 cut(s)	34, 155, 167, 173, 464, 632
MnlI	CCTC	7 cut(s)	40, 84, 108, 162, 174, 527, 646
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	57, 650
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	3 cut(s)	63, 214, 223
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	2 cut(s)	47, 64
NlaIV	GGNNCC	1 cut(s)	637
NmeAIII	GCCGAG	1 cut(s)	204
PaeR7I	CTCGAG	1 cut(s)	278
PagI	TCATGA	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	4 cut(s)	59, 79, 276, 566
PleI	GAGTC	6 cut(s)	33, 154, 166, 172, 463, 631
PpsI	GAGTC	6 cut(s)	33, 154, 166, 172, 463, 631
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	637
PspPI	GGNCC	1 cut(s)	358
PstI	CTGCAG	1 cut(s)	631
PstNI	CAGNNNCTG	2 cut(s)	361, 382
PvuII	CAGCTG	2 cut(s)	57, 650
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SatI	GCNGC	4 cut(s)	58, 78, 275, 565
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	358
ScaI	AGTACT	1 cut(s)	581
SchI	GAGTC	6 cut(s)	34, 155, 167, 173, 464, 632
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	68
SfaNI	GCATC	4 cut(s)	180, 332, 390, 460
SfcI	CTRYAG	2 cut(s)	289, 627
Sfr274I	CTCGAG	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	278
SmlI	CTYRAG	2 cut(s)	173, 278
SmoI	CTYRAG	2 cut(s)	173, 278
Sse9I	AATT	5 cut(s)	296, 307, 412, 665, 670
SsiI	CCGC	1 cut(s)	565
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	2 cut(s)	209, 258
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	2 cut(s)	452, 635
TaqI	TCGA	5 cut(s)	6, 15, 23, 167, 279
TasI	AATT	5 cut(s)	296, 307, 412, 665, 670
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	1 cut(s)	567
TfiI	GAWTC	1 cut(s)	485
TscAI	CASTG	4 cut(s)	75, 127, 519, 716
TseI	GCWGC	3 cut(s)	57, 77, 274
TspDTI	ATGAA	2 cut(s)	449, 612
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	4 cut(s)	75, 127, 519, 716
XapI	RAATTY	1 cut(s)	670
XhoI	CTCGAG	1 cut(s)	278
XspI	CTAG	2 cut(s)	209, 258
ZrmI	AGTACT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.