Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012153

Physical Location & Seq

Genomic Coordinates Reverse (-)

23259153 .. 23260534

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G194400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGATGTTAGACCAAATTGAATATTCTAGCCCCACAGCAGAAGATGATCATGAGGGTTTTAGCTGCATGAGCTCACTTGAAGCTGCTGGCAGTGTGAAGAGGAAGAACAGCAAAAACAAGAAGAGATTCAGTGATGAACAGATTAGATCATTGGAGTCTTTATTTGAGTCTGAGTCAAGGCTTGAGCCAAGGAAGAAGATGCAATTGGCCAAGGAGCTGGGTTTGCAGCCAAGACAGGTTGCAATTTGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCCAAGCAGCTTGAAAGAGACTACAGCATACTCAGAGCCAATTACAACAACTTGGCATCAAAGTTTGAAGCTTTGAAGAAAGAAAAGCAGGCCTTGGTTATTCAGGTGCAGAAGCTGAATGATCTGATGAGGGAAAGGCCAGAGGAGGAGAGGCAGAGCTGTGGTGAATCAGACAATGGAGATGCAGCTAGGTCTGAATCTGATCAGGTAAAGCTTAATCATCTGTCACTTGAAAAATCAGAGCAAGGAGGGCGTGGGGTTTTGTCAGATGATGACAGCAGCATAAAGGCAGAGTATTTTGGTCTTGAAGATGAACCAAACCTTGTGAGCTTGGTTGAATCTGCAGATGGGTCCTTGACATCAACTGAGGACTGGGGCAGATTGAATTCTGAGGGTTTCTTTGATGAGTCAATTAGCAGTGATTATCAGTGGTGGGATTTCTGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

242

Amino Acids

27.73

Weight (kDa)

4.93

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46680 AT2G46680 AT3G61890
fragaria_vesca	FvH4_7g17320
malus_domestica	MD00G1036300.v1.1 MD07G1156200.v1.1
prunus_persica	Prupe.2G194400_v2.0.a1
pyrus_communis	pycom01g11010 pycom07g15300
rosa_chinensis	RchiOBHm_Chr1g0360751
rosa_laevigata	RLG00000027788
rosa_multiflora	Rmu_ssc0000022.1_g000013
rosa_roxburghii	Rroxscaffold_4G00295850
rosa_rugosa	Rorug01G0281300
rosa_samantha	Rh1AG293400 Rh1BG257800 Rh1CG275800 Rh1DG287900
rosa_wichuraiana	Rw1G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	661
AgsI	TTSAA	9 cut(s)	20, 80, 290, 344, 352, 509, 584, 614, 661
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	288
AlwNI	CAGNNNCTG	1 cut(s)	391
AoxI	GGCC	3 cut(s)	207, 366, 413
ApeKI	GCWGC	6 cut(s)	63, 83, 226, 283, 461, 555
ApoI	RAATTY	1 cut(s)	661
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	627
AsuHPI	GGTGA	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	627
BalI	TGGCCA	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	6 cut(s)	50, 70, 238, 295, 473, 567
BccI	CCATC	1 cut(s)	617
BclI	TGATCA	2 cut(s)	46, 478
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	3 cut(s)	27, 267, 465
BfmI	CTRYAG	2 cut(s)	298, 618
BisI	GCNGC	6 cut(s)	64, 84, 227, 284, 462, 556
BlsI	GCNGC	6 cut(s)	65, 85, 228, 285, 463, 557
Bme18I	GGWCC	1 cut(s)	627
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	628
BmrI	ACTGGG	1 cut(s)	658
BmsI	GCATC	3 cut(s)	189, 341, 448
BmuI	ACTGGG	1 cut(s)	658
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	188, 210, 369
Bse1I	ACTGG	1 cut(s)	653
BseDI	CCNNGG	3 cut(s)	188, 210, 369
BseMII	CTCAG	4 cut(s)	162, 322, 633, 657
BseNI	ACTGG	1 cut(s)	653
BseRI	GAGGAG	2 cut(s)	434, 437
BseXI	GCAGC	6 cut(s)	50, 70, 238, 295, 473, 567
BseYI	CCCAGC	1 cut(s)	217
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	3 cut(s)	209, 368, 415
BsiHKAI	GWGCWC	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	288
BsnI	GGCC	3 cut(s)	209, 368, 415
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	4 cut(s)	46, 146, 397, 478
BspANI	GGCC	3 cut(s)	209, 368, 415
BspCNI	CTCAG	4 cut(s)	163, 321, 634, 658
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	628
BspMAI	CTGCAG	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	653
BssECI	CCNNGG	3 cut(s)	188, 210, 369
BssMI	GATC	4 cut(s)	46, 146, 397, 478
BssT1I	CCWWGG	3 cut(s)	188, 210, 369
Bst6I	CTCTTC	2 cut(s)	92, 116
BstC8I	GCNNGC	2 cut(s)	88, 366
BstDEI	CTNAG	4 cut(s)	171, 308, 642, 666
BstKTI	GATC	4 cut(s)	49, 149, 400, 481
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	4 cut(s)	46, 146, 397, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 223, 526
BstSFI	CTRYAG	2 cut(s)	298, 618
BstV1I	GCAGC	6 cut(s)	50, 70, 238, 295, 473, 567
BstXI	CCANNNNNNTGG	1 cut(s)	217
BsuRI	GGCC	3 cut(s)	209, 368, 415
BtsI	GCAGTG	2 cut(s)	97, 700
BtsIMutI	CAGTG	4 cut(s)	97, 136, 700, 710
Cac8I	GCNNGC	2 cut(s)	88, 366
CaiI	CAGNNNCTG	1 cut(s)	391
CciI	TCATGA	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	627
CviAII	CATG	2 cut(s)	50, 67
DdeI	CTNAG	4 cut(s)	171, 308, 642, 666
DpnI	GATC	4 cut(s)	48, 148, 399, 480
DpnII	GATC	4 cut(s)	46, 146, 397, 478
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	92, 116
EarI	CTCTTC	2 cut(s)	92, 116
Ecl136II	GAGCTC	1 cut(s)	72
Eco130I	CCWWGG	3 cut(s)	188, 210, 369
Eco147I	AGGCCT	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	627
Eco53kI	GAGCTC	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	627
EcoRI	GAATTC	1 cut(s)	661
EcoT14I	CCWWGG	3 cut(s)	188, 210, 369
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	3 cut(s)	188, 210, 369
FaeI	CATG	2 cut(s)	53, 70
FaiI	YATR	4 cut(s)	51, 68, 305, 560
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	2 cut(s)	49, 66
FbaI	TGATCA	2 cut(s)	46, 478
Fnu4HI	GCNGC	6 cut(s)	64, 84, 227, 284, 462, 556
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	6 cut(s)	64, 84, 227, 284, 462, 556
FspBI	CTAG	3 cut(s)	27, 267, 465
GluI	GCNGC	6 cut(s)	64, 84, 227, 284, 462, 556
GsaI	CCCAGC	1 cut(s)	221
HaeIII	GGCC	3 cut(s)	209, 368, 415
Hin1II	CATG	2 cut(s)	53, 70
HindIII	AAGCTT	2 cut(s)	345, 488
HinfI	GANTC	8 cut(s)	126, 155, 167, 173, 443, 473, 614, 683
HphI	GGTGA	1 cut(s)	452
Hpy188III	TCNNGA	3 cut(s)	50, 581, 723
HpyCH4V	TGCA	7 cut(s)	66, 202, 226, 242, 385, 461, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 223, 526
HpyF3I	CTNAG	4 cut(s)	171, 308, 642, 666
Hsp92II	CATG	2 cut(s)	53, 70
Ksp22I	TGATCA	2 cut(s)	46, 478
Kzo9I	GATC	4 cut(s)	46, 146, 397, 478
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	9 cut(s)	72, 203, 221, 350, 365, 429, 467, 634, 703
Lsp1109I	GCAGC	6 cut(s)	50, 70, 238, 295, 473, 567
LweI	GCATC	3 cut(s)	189, 341, 448
MaeI	CTAG	3 cut(s)	27, 267, 465
MaeIII	GTNAC	1 cut(s)	501
MalI	GATC	4 cut(s)	48, 148, 399, 480
MboI	GATC	4 cut(s)	46, 146, 397, 478
MboII	GAAGA	8 cut(s)	53, 109, 115, 133, 205, 208, 364, 596
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	74
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	6 cut(s)	15, 203, 243, 316, 661, 687
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	4 cut(s)	164, 176, 182, 692
MnlI	CCTC	9 cut(s)	46, 93, 399, 412, 415, 420, 518, 637, 661
Mox20I	TGGCCA	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	209
MunI	CAATTG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	69, 223, 526
NdeII	GATC	4 cut(s)	46, 146, 397, 478
NlaIII	CATG	2 cut(s)	53, 70
NlaIV	GGNNCC	1 cut(s)	628
NmuCI	GTSAC	1 cut(s)	501
PagI	TCATGA	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	368
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	4 cut(s)	126, 443, 473, 614
PkrI	GCNGC	6 cut(s)	65, 85, 228, 285, 463, 557
PleI	GAGTC	4 cut(s)	163, 175, 181, 691
PpsI	GAGTC	4 cut(s)	163, 175, 181, 691
PpuMI	RGGWCCY	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	627
PspFI	CCCAGC	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	1 cut(s)	627
PspPPI	RGGWCCY	1 cut(s)	627
PstI	CTGCAG	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	391
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	6 cut(s)	64, 84, 227, 284, 462, 556
Sau3AI	GATC	4 cut(s)	46, 146, 397, 478
Sau96I	GGNCC	1 cut(s)	627
SchI	GAGTC	4 cut(s)	164, 176, 182, 692
SduI	GDGCHC	1 cut(s)	74
SfaNI	GCATC	3 cut(s)	189, 341, 448
SfcI	CTRYAG	2 cut(s)	298, 618
SinI	GGWCC	1 cut(s)	627
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	6 cut(s)	15, 203, 243, 316, 661, 687
SseBI	AGGCCT	1 cut(s)	368
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	3 cut(s)	27, 267, 465
SstI	GAGCTC	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	368
StyI	CCWWGG	3 cut(s)	188, 210, 369
TasI	AATT	6 cut(s)	15, 203, 243, 316, 661, 687
TfiI	GAWTC	4 cut(s)	126, 443, 473, 614
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	4 cut(s)	97, 136, 700, 710
TseFI	GTSAC	1 cut(s)	501
TseI	GCWGC	6 cut(s)	63, 83, 226, 283, 461, 555
Tsp45I	GTSAC	1 cut(s)	501
TspDTI	ATGAA	2 cut(s)	150, 603
TspRI	CASTG	4 cut(s)	97, 136, 700, 710
VpaK11BI	GGWCC	1 cut(s)	627
XapI	RAATTY	1 cut(s)	661
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	3 cut(s)	27, 267, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.