Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0012153

Physical Location & Seq

Genomic Coordinates Reverse (-)

51052437 .. 51054087

Gene Structure 1651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG287900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGATCCCCAAAAACAACGAGATGTTAGAGGTAGACCAAGTTGGATATTCTCCCTCACCGGAAGAAGCCGAGGCTTTTAGCTACATGAACGACTCGTTAGGTGCAGGCAGTAGTTTAAAGAAGAAGAGCAGCAAGAACAACAAGAAGAGGTTCACTGATGAGCAGATTCGATCGTTGGAGTCCATTTTTGAGTCCGAGTCGAGGTTGGAGCCAAGGAAGAAGCTGCAGCTGGCGAAAGAATTGGGGTTGCAACCGAGGCAGGTTGCGATATGGTTTCAGAATAAGAGAGCTCGATGGAAGTCGAAGCAGCTTGAAAAAGACTACAGCATACTCAGAGCCAACTACAATAACTTGGCTTCCCGGTTTGAAGCCCTCAAGAAAGAAAAGCAGGCCTTGGTTACTCAGTTGCAGAAGCTGAATGATAAGATGCAAAGGCCAAAAGAGGAAAGGAACAATAGCATTGATGGCGAATCGGACAATGGAGATGATGCTACTAGGTCGGAATCTGAGGGGAAGCCTAATTACCAGATGTCATTGGAAAAATCAGAACATCGGCTTCGAGTTATGTCAGATGATGATAGCAGCATAAAGGCAGAGTACTTTGGACTTGAGGAGGAACCGAACCTTGTGAACTTTGTGGAATCTGCAGATGGGTCCTTAACATCTCCTGAAGATTGGGGTAGATTGAACTCCGATGGTGGTCTCTTTGACCAATCGACTAGTGATTACCAGTGGTGGGATTTTTGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

250

Amino Acids

28.88

Weight (kDa)

5.12

Isoelectric Point (pI)

59.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	46 - 100	1.7e-17	Homeodomain
HALZ	PF02183	102 - 144	5.4e-17	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46680 AT2G46680 AT3G61890
fragaria_vesca	FvH4_7g17320
malus_domestica	MD00G1036300.v1.1 MD07G1156200.v1.1
prunus_persica	Prupe.2G194400_v2.0.a1
pyrus_communis	pycom01g11010 pycom07g15300
rosa_chinensis	RchiOBHm_Chr1g0360751
rosa_laevigata	RLG00000027788
rosa_multiflora	Rmu_ssc0000022.1_g000013
rosa_roxburghii	Rroxscaffold_4G00295850
rosa_rugosa	Rorug01G0281300
rosa_samantha	Rh1AG293400 Rh1BG257800 Rh1CG275800 Rh1DG287900
rosa_wichuraiana	Rw1G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	690
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	2 cut(s)	201, 736
AgsI	TTSAA	3 cut(s)	314, 368, 688
AhlI	ACTAGT	1 cut(s)	719
AluBI	AGCT	6 cut(s)	81, 223, 229, 290, 310, 415
AluI	AGCT	6 cut(s)	81, 223, 229, 290, 310, 415
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	707
AlwNI	CAGNNNCTG	1 cut(s)	415
AoxI	GGCC	2 cut(s)	390, 434
ApeKI	GCWGC	5 cut(s)	129, 223, 226, 307, 582
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	654
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	654
BanII	GRGCYC	1 cut(s)	292
BarI	GAAGNNNNNNTAC	2 cut(s)	506, 538
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	5 cut(s)	141, 210, 238, 319, 594
BccI	CCATC	4 cut(s)	288, 458, 644, 689
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	707
BcuI	ACTAGT	1 cut(s)	719
BfaI	CTAG	2 cut(s)	495, 720
BfmI	CTRYAG	3 cut(s)	224, 322, 645
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	5 cut(s)	130, 224, 227, 308, 583
BlsI	GCNGC	5 cut(s)	131, 225, 228, 309, 584
BmcAI	AGTACT	1 cut(s)	599
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	654
BmgT120I	GGNCC	1 cut(s)	654
BmiI	GGNNCC	3 cut(s)	210, 618, 655
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	417, 478
BpuEI	CTTGAG	2 cut(s)	359, 629
BpuMI	CCSGG	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	4 cut(s)	69, 212, 254, 393
BsaWI	WCCGGW	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 736
Bse1I	ACTGG	1 cut(s)	730
BseDI	CCNNGG	4 cut(s)	69, 212, 254, 393
BseLI	CCNNNNNNNGG	2 cut(s)	201, 736
BseMII	CTCAG	3 cut(s)	346, 416, 498
BseNI	ACTGG	1 cut(s)	730
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	5 cut(s)	141, 210, 238, 319, 594
BsgI	GTGCAG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	392, 436
BsiEI	CGRYCG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	59, 361
BslI	CCNNNNNNNGG	2 cut(s)	201, 736
BsmAI	GTCTC	1 cut(s)	707
BsnI	GGCC	2 cut(s)	392, 436
Bso31I	GGTCTC	1 cut(s)	707
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	3, 170
BspANI	GGCC	2 cut(s)	392, 436
BspCNI	CTCAG	3 cut(s)	345, 415, 499
BspLI	GGNNCC	3 cut(s)	210, 618, 655
BspMAI	CTGCAG	2 cut(s)	228, 649
BspMI	ACCTGC	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	707
BsrI	ACTGG	1 cut(s)	730
BssECI	CCNNGG	4 cut(s)	69, 212, 254, 393
BssMI	GATC	2 cut(s)	3, 170
BssT1I	CCWWGG	2 cut(s)	212, 393
Bst6I	CTCTTC	2 cut(s)	119, 140
BstC8I	GCNNGC	3 cut(s)	106, 231, 390
BstDEI	CTNAG	3 cut(s)	332, 402, 507
BstKTI	GATC	2 cut(s)	6, 173
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	2 cut(s)	3, 170
BstMCI	CGRYCG	1 cut(s)	173
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 465
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	3 cut(s)	224, 322, 645
BstV1I	GCAGC	5 cut(s)	141, 210, 238, 319, 594
BsuRI	GGCC	2 cut(s)	392, 436
BtsIMutI	CAGTG	2 cut(s)	153, 737
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	3 cut(s)	106, 231, 390
CaiI	CAGNNNCTG	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	654
Csp6I	GTAC	1 cut(s)	598
CviAII	CATG	1 cut(s)	85
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	3 cut(s)	332, 402, 507
DpnI	GATC	2 cut(s)	5, 172
DpnII	GATC	2 cut(s)	3, 170
DraI	TTTAAA	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	119, 140
EarI	CTCTTC	2 cut(s)	119, 140
Ecl136II	GAGCTC	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	212, 393
Eco147I	AGGCCT	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	654
Eco53kI	GAGCTC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	690
EcoICRI	GAGCTC	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	654
EcoT14I	CCWWGG	2 cut(s)	212, 393
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	2 cut(s)	212, 393
FaeI	CATG	1 cut(s)	88
FaiI	YATR	5 cut(s)	86, 271, 329, 566, 587
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	5 cut(s)	130, 224, 227, 308, 583
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	5 cut(s)	130, 224, 227, 308, 583
FspBI	CTAG	2 cut(s)	495, 720
GluI	GCNGC	5 cut(s)	130, 224, 227, 308, 583
HaeIII	GGCC	2 cut(s)	392, 436
HapII	CCGG	2 cut(s)	59, 361
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	8 cut(s)	92, 166, 179, 191, 197, 470, 503, 641
HpaII	CCGG	2 cut(s)	59, 361
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	3 cut(s)	34, 153, 631
Hpy188I	TCNGA	9 cut(s)	196, 279, 335, 475, 502, 508, 547, 571, 694
Hpy188III	TCNNGA	3 cut(s)	376, 668, 750
Hpy8I	GTNNAC	3 cut(s)	34, 153, 631
HpyCH4V	TGCA	6 cut(s)	104, 226, 250, 409, 430, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 465
HpyF3I	CTNAG	3 cut(s)	332, 402, 507
Hsp92II	CATG	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	3, 170
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	9 cut(s)	72, 90, 215, 245, 374, 374, 539, 681, 743
Lsp1109I	GCAGC	5 cut(s)	141, 210, 238, 319, 594
LweI	GCATC	2 cut(s)	417, 478
MaeI	CTAG	2 cut(s)	495, 720
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	2 cut(s)	5, 172
MboI	GATC	2 cut(s)	3, 170
MboII	GAAGA	6 cut(s)	74, 133, 136, 157, 229, 683
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	2 cut(s)	239, 520
MlyI	GAGTC	4 cut(s)	86, 188, 200, 206
MmeI	TCCRAC	4 cut(s)	22, 156, 186, 480
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	2 cut(s)	116, 659
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	2 cut(s)	59, 361
MspR9I	CCNGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	256, 465
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	2 cut(s)	3, 170
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	3 cut(s)	210, 618, 655
NmeAIII	GCCGAG	1 cut(s)	94
PceI	AGGCCT	1 cut(s)	392
PciSI	GCTCTTC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	4 cut(s)	166, 470, 503, 641
PkrI	GCNGC	5 cut(s)	131, 225, 228, 309, 584
Ple19I	CGATCG	1 cut(s)	173
PleI	GAGTC	4 cut(s)	86, 187, 199, 205
PpsI	GAGTC	4 cut(s)	86, 187, 199, 205
PpuMI	RGGWCCY	1 cut(s)	654
Psp124BI	GAGCTC	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	654
PspN4I	GGNNCC	3 cut(s)	210, 618, 655
PspPI	GGNCC	1 cut(s)	654
PspPPI	RGGWCCY	1 cut(s)	654
PstI	CTGCAG	2 cut(s)	228, 649
PstNI	CAGNNNCTG	1 cut(s)	415
PvuI	CGATCG	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
SacI	GAGCTC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	116, 659
SatI	GCNGC	5 cut(s)	130, 224, 227, 308, 583
Sau3AI	GATC	2 cut(s)	3, 170
Sau96I	GGNCC	1 cut(s)	654
ScaI	AGTACT	1 cut(s)	599
SchI	GAGTC	4 cut(s)	86, 188, 200, 206
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	2 cut(s)	417, 478
SfcI	CTRYAG	3 cut(s)	224, 322, 645
SinI	GGWCC	1 cut(s)	654
SmlI	CTYRAG	2 cut(s)	374, 608
SmoI	CTYRAG	2 cut(s)	374, 608
SpeI	ACTAGT	1 cut(s)	719
Sse9I	AATT	2 cut(s)	239, 520
SseBI	AGGCCT	1 cut(s)	392
SspMI	CTAG	2 cut(s)	495, 720
SstI	GAGCTC	1 cut(s)	292
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	2 cut(s)	212, 393
TaqI	TCGA	6 cut(s)	169, 200, 292, 302, 559, 716
TasI	AATT	2 cut(s)	239, 520
TatI	WGTACW	1 cut(s)	597
TfiI	GAWTC	4 cut(s)	166, 470, 503, 641
Tru1I	TTAA	2 cut(s)	116, 659
Tru9I	TTAA	2 cut(s)	116, 659
TscAI	CASTG	2 cut(s)	160, 737
TseI	GCWGC	5 cut(s)	129, 223, 226, 307, 582
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	160, 737
VpaK11BI	GGWCC	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	2 cut(s)	495, 720
ZrmI	AGTACT	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.