Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016604

Physical Location & Seq

Genomic Coordinates Forward (+)

19251066 .. 19253484

Gene Structure 2419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGCCTCCTCTGTTTCTTCCTTCTTCTTCCTCTGCTCTGTTTCTACTTCTTCTCCTCCTCTTAACTCTCCAAACCCTAACCTCTATCTCTCTCTCTCAGCCACAGGCTCTCCGTTCACCAGAAAAGTGTGGAAACTTCTCTGTCTCCTTCCCTTTCCAACTCTCTTCCTCCTCCTCCGCAGCCGCTTTTCGACTCTCCTGCGAAAACTCCTCCACTCTGTTTCTTCACATAAACCACCAAAGCTACCGAATCATCGAGTTCTTCACCGACGGTCTCCTCGTAGACTTCCCTTCGTCTCCTTCTTGTCGCCAATTCAACGACTTACGCTCTTTCCCTTTCTCCGCAAACCAATTCTTCTCCATCTCTTTCGAAAACGTAATCGGTCTTTACGACTGCGAAGATTCTTCTCTCTGTAAATTCGGTTGCGAAACCAACGATCTCTTCGGTTGTGACGGCAGAGAAGAAGACGAAACCTCCGGTGGAGATATCGGATGTTGCTATCCTTTGTCTGATCATAGCGCGTGGCGTGTAGGTGATGATTTCTCTGTGTTTAGTAGATATGGATGCAGAGGATTCTCTTCGTGGCTTGTTCCAAGAGGGACGAACAGAGGAAAAAGAGGCGTTAAATTAGAGTGGGCTATTCCAAGAAACTCGCCGGAGGCTATTTGTGATCGTGAGGCTCGAACTGTTAACGCTACGGCTATTGAAGGAAGTGTTCGTTGTGTGTGCCGTGATGGCTTCGTCGGCGACGGCTTCCTCCATGGCACCGGTTGCTTAAAATCTTGCTTCAAAGACGGAAAGGAATTATATGGAGACAAATGCAAGATCAAGAAACACAACGGGAAGAAACTCACTGTTTTAGCCGGTGTTTTGGCTCCTCTGTTCATACTAGGCTCACTGTTAGCTCTCTTCTGTCTCCTAAAACGTCCGGTAACAAGTCACAAAGATCAACAGTTCGATATATCTACAACAACTACCACTACTAATAGTGTTTCGTTTCGCAAAGGTTACAACAAGACTCGTCTCTTCACGTACCGTGAGTTAGAAGAAGCCACCAAAGGGTTTCAAGATTCACAAAAACTCACACAAGGCAAAACCGGAACAATCTACTCAGGCAATCTAACAAACGGAACACGCGTGATCGTTCACAAGGTTCTCTGCGAAAACCAGATTGAATTCATGGAGATTTCGTCTCAGATTGATCATCTATCCGCGGTTTTGCATAGAAACCTCGCGAGAATCATAGGTTTTTGTATGGATATTGGATATAATCCACTAGTTGTTTACGAGTATCCGGTAAATGGATCGCTTGGAGACCGATTGCGGCTAGGGCTTGATTGGTGCAAGAGAGTTAACATTGTAGCTGAAGTCGCTGGTTTACTCGCGTTACTTCAGTATGAGAACTATCCACCGATTCTACACACCAACATTTCTTCTGGTAACATCTTCTTAGACGAAGATTTTCAAGCTAAAGTCACAGGTTTTGGTTTGCAGAGGAAACAGAGGATTGATACTAGTATGTACGATTTCGCGGTTTTGCTTCTAGAGATTGTGACTGGTTTAAAGCAGAGAGAAGAGACGGTAACTCAAGCGTTACAGAAGATTAGAAGCGGTAAGCTTGAAGAAATCGTGGATCCTTCAATGTATTTTCATGAGCAGCCTGTGGCTTTTAGAGAACAGATTGGTTTAGTAGCTGATATAGCGACTCGGTGCGTTTTGTTTGGTGGTGATGGGAAATTTGGAATGGTTGATGCAGCTAGAGAGCTGTTGCAGATCGCTGGAAACAACGGTGGAGGCGGCTGCGATAAGAAAAGAGATGGAATTGAGGAAACGTTTTCGAATTCAAGTTTGCTTCAGATGATTTCTATGTCTCCTGATTCTATCTATCTCCCTAAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase_Tyr

Protein Analysis

633

Amino Acids

70.17

Weight (kDa)

6.44

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	41 - 86	1e-07	Wall-associated receptor kinase galacturonan-binding
Pkinase	PF00069	355 - 510	1.4e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	358 - 502	7.9e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46850
fragaria_vesca	FvH4_7g17870
malus_domestica	MD01G1091100.v1.1 MD07G1161300.v1.1
prunus_persica	Prupe.2G200600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0361321
rosa_laevigata	RLG00000027725
rosa_roxburghii	Rroxscaffold_4G00295040
rosa_rugosa	Rorug01G0288300
rosa_samantha	Rh1AG299500 Rh1BG263300 Rh1CG280900 Rh1DG293400
rosa_wichuraiana	Rw1G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	764
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	6 cut(s)	521, 1137, 1214, 1235, 1385, 1532
AciI	CCGC	9 cut(s)	177, 183, 342, 1212, 1214, 1324, 1532, 1611, 1797
AclI	AACGTT	1 cut(s)	1832
AclWI	GGATC	3 cut(s)	1312, 1628, 1641
AcsI	RAATTY	4 cut(s)	416, 1175, 1736, 1840
AcuI	CTGAAG	3 cut(s)	1376, 1386, 1838
AfaI	GTAC	2 cut(s)	1034, 1523
AfiI	CCNNNNNNNGG	2 cut(s)	1059, 1301
AflIII	ACRYGT	1 cut(s)	1135
AgeI	ACCGGT	1 cut(s)	767
AgsI	TTSAA	9 cut(s)	316, 707, 790, 1067, 1175, 1466, 1622, 1641, 1845
AhlI	ACTAGT	2 cut(s)	1276, 1514
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	8 cut(s)	243, 905, 1364, 1469, 1618, 1694, 1757, 1765
AluI	AGCT	8 cut(s)	243, 905, 1364, 1469, 1618, 1694, 1757, 1765
AlwI	GGATC	3 cut(s)	1312, 1628, 1641
ApeKI	GCWGC	4 cut(s)	179, 1657, 1754, 1800
ApoI	RAATTY	4 cut(s)	416, 1175, 1736, 1840
AsiGI	ACCGGT	1 cut(s)	767
Asp700I	GAANNNNTTC	1 cut(s)	1461
AspLEI	GCGC	1 cut(s)	521
AsuHPI	GGTGA	4 cut(s)	108, 256, 545, 1739
AsuII	TTCGAA	2 cut(s)	369, 1838
BamHI	GGATCC	1 cut(s)	1633
BanI	GGYRCC	1 cut(s)	764
BbsI	GAAGAC	1 cut(s)	471
BbvI	GCAGC	4 cut(s)	191, 1669, 1766, 1787
BccI	CCATC	4 cut(s)	368, 728, 1724, 1811
BceAI	ACGGC	4 cut(s)	469, 714, 714, 766
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BciVI	GTATCC	1 cut(s)	1302
BclI	TGATCA	2 cut(s)	511, 1201
BcuI	ACTAGT	2 cut(s)	1276, 1514
BfaI	CTAG	6 cut(s)	890, 1277, 1328, 1515, 1544, 1758
BfuI	GTATCC	1 cut(s)	1302
BglI	GCCNNNNNGGC	1 cut(s)	735
BisI	GCNGC	7 cut(s)	180, 183, 1325, 1658, 1755, 1798, 1801
BlsI	GCNGC	7 cut(s)	181, 184, 1326, 1659, 1756, 1799, 1802
BmiI	GGNNCC	3 cut(s)	766, 876, 1635
BmsI	GCATC	2 cut(s)	554, 1741
BpiI	GAAGAC	1 cut(s)	471
Bpu14I	TTCGAA	2 cut(s)	369, 1838
BpuEI	CTTGAG	1 cut(s)	1572
BsaAI	YACGTR	1 cut(s)	1032
BsaI	GGTCTC	2 cut(s)	278, 1308
BsaJI	CCNNGG	2 cut(s)	760, 1212
BsaWI	WCCGGW	5 cut(s)	476, 767, 928, 1097, 1294
BsaXI	ACNNNNNCTCC	8 cut(s)	36, 66, 93, 123, 458, 488, 1175, 1205
Bsc4I	CCNNNNNNNGG	2 cut(s)	1059, 1301
Bse118I	RCCGGY	2 cut(s)	767, 863
Bse1I	ACTGG	1 cut(s)	1561
BseDI	CCNNGG	2 cut(s)	760, 1212
BseGI	GGATG	2 cut(s)	497, 569
BseLI	CCNNNNNNNGG	2 cut(s)	1059, 1301
BseMII	CTCAG	3 cut(s)	110, 1125, 1208
BseNI	ACTGG	1 cut(s)	1561
BseRI	GAGGAG	7 cut(s)	44, 47, 160, 163, 199, 266, 867
BseXI	GCAGC	4 cut(s)	191, 1669, 1766, 1787
Bsh1236I	CGCG	6 cut(s)	521, 1137, 1214, 1235, 1385, 1532
BshNI	GGYRCC	1 cut(s)	764
BshTI	ACCGGT	1 cut(s)	767
BsiSI	CCGG	7 cut(s)	477, 656, 768, 864, 929, 1098, 1295
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	1059, 1301
BsmBI	CGTCTC	4 cut(s)	300, 1028, 1197, 1571
BsmFI	GGGAC	1 cut(s)	613
Bso31I	GGTCTC	2 cut(s)	278, 1308
Bsp119I	TTCGAA	2 cut(s)	369, 1838
Bsp19I	CCATGG	1 cut(s)	760
Bsp68I	TCGCGA	1 cut(s)	1235
BspACI	CCGC	9 cut(s)	177, 183, 342, 1212, 1214, 1324, 1532, 1611, 1797
BspCNI	CTCAG	3 cut(s)	109, 1124, 1207
BspFNI	CGCG	6 cut(s)	521, 1137, 1214, 1235, 1385, 1532
BspHI	TCATGA	1 cut(s)	1651
BspLI	GGNNCC	3 cut(s)	766, 876, 1635
BspPI	GGATC	3 cut(s)	1312, 1628, 1641
BspT104I	TTCGAA	2 cut(s)	369, 1838
BspT107I	GGYRCC	1 cut(s)	764
BspTNI	GGTCTC	2 cut(s)	278, 1308
BsrFI	RCCGGY	2 cut(s)	767, 863
BsrI	ACTGG	1 cut(s)	1561
BssAI	RCCGGY	2 cut(s)	767, 863
BssECI	CCNNGG	2 cut(s)	760, 1212
BssT1I	CCWWGG	1 cut(s)	760
Bst4CI	ACNGT	8 cut(s)	272, 688, 856, 900, 954, 1037, 1582, 1790
Bst6I	CTCTTC	6 cut(s)	169, 446, 583, 914, 1031, 1569
BstAPI	GCANNNNNTGC	1 cut(s)	771
BstBAI	YACGTR	1 cut(s)	1032
BstBI	TTCGAA	2 cut(s)	369, 1838
BstDEI	CTNAG	4 cut(s)	96, 1111, 1194, 1450
BstDSI	CCRYGG	2 cut(s)	760, 1212
BstF5I	GGATG	2 cut(s)	497, 569
BstFNI	CGCG	6 cut(s)	521, 1137, 1214, 1235, 1385, 1532
BstHHI	GCGC	1 cut(s)	521
BstMWI	GCNNNNNNNGC	6 cut(s)	735, 744, 771, 1330, 1370, 1700
BstUI	CGCG	6 cut(s)	521, 1137, 1214, 1235, 1385, 1532
BstV1I	GCAGC	4 cut(s)	191, 1669, 1766, 1787
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	1633
BstYI	RGATCY	1 cut(s)	1633
BsuI	GTATCC	1 cut(s)	1302
BtgI	CCRYGG	2 cut(s)	760, 1212
BtsCI	GGATG	2 cut(s)	497, 569
BtsIMutI	CAGTG	2 cut(s)	852, 896
BtuMI	TCGCGA	1 cut(s)	1235
CciI	TCATGA	1 cut(s)	1651
CfoI	GCGC	1 cut(s)	521
Cfr10I	RCCGGY	2 cut(s)	767, 863
Cfr42I	CCGCGG	1 cut(s)	1215
Csp6I	GTAC	2 cut(s)	1033, 1522
CspAI	ACCGGT	1 cut(s)	767
CviAII	CATG	3 cut(s)	761, 1180, 1652
CviQI	GTAC	2 cut(s)	1033, 1522
DdeI	CTNAG	4 cut(s)	96, 1111, 1194, 1450
DraI	TTTAAA	1 cut(s)	1563
Eam1104I	CTCTTC	6 cut(s)	169, 446, 583, 914, 1031, 1569
EarI	CTCTTC	6 cut(s)	169, 446, 583, 914, 1031, 1569
Eco130I	CCWWGG	1 cut(s)	760
Eco31I	GGTCTC	2 cut(s)	278, 1308
Eco32I	GATATC	1 cut(s)	487
Eco57I	CTGAAG	3 cut(s)	1376, 1386, 1838
EcoRI	GAATTC	2 cut(s)	1175, 1840
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	760
Esp3I	CGTCTC	4 cut(s)	300, 1028, 1197, 1571
FaeI	CATG	3 cut(s)	764, 1183, 1655
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	3 cut(s)	760, 1179, 1651
FbaI	TGATCA	2 cut(s)	511, 1201
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	7 cut(s)	180, 183, 1325, 1658, 1755, 1798, 1801
FokI	GGATG	2 cut(s)	504, 576
Fsp4HI	GCNGC	7 cut(s)	180, 183, 1325, 1658, 1755, 1798, 1801
FspBI	CTAG	6 cut(s)	890, 1277, 1328, 1515, 1544, 1758
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	7 cut(s)	180, 183, 1325, 1658, 1755, 1798, 1801
HapII	CCGG	7 cut(s)	477, 656, 768, 864, 929, 1098, 1295
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	3 cut(s)	764, 1183, 1655
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HincII	GTYRAC	2 cut(s)	691, 1354
HindII	GTYRAC	2 cut(s)	691, 1354
HindIII	AAGCTT	1 cut(s)	1616
HpaI	GTTAAC	2 cut(s)	691, 1354
HpaII	CCGG	7 cut(s)	477, 656, 768, 864, 929, 1098, 1295
HphI	GGTGA	4 cut(s)	108, 256, 545, 1739
Hpy166II	GTNNAC	7 cut(s)	116, 283, 691, 1147, 1285, 1354, 1379
Hpy188I	TCNGA	4 cut(s)	491, 511, 1197, 1857
Hpy188III	TCNNGA	7 cut(s)	674, 829, 1067, 1234, 1544, 1652, 1874
Hpy8I	GTNNAC	7 cut(s)	116, 283, 691, 1147, 1285, 1354, 1379
Hpy99I	CGWCG	3 cut(s)	272, 746, 752
HpyAV	CCTTC	6 cut(s)	30, 157, 300, 309, 701, 1647
HpyCH4III	ACNGT	8 cut(s)	272, 688, 856, 900, 954, 1037, 1582, 1790
HpyCH4IV	ACGT	4 cut(s)	375, 925, 1031, 1832
HpyCH4V	TGCA	7 cut(s)	567, 822, 1222, 1344, 1492, 1754, 1771
HpyF10VI	GCNNNNNNNGC	6 cut(s)	735, 744, 771, 1330, 1370, 1700
HpyF3I	CTNAG	4 cut(s)	96, 1111, 1194, 1450
HpySE526I	ACGT	4 cut(s)	375, 925, 1031, 1832
Hsp92II	CATG	3 cut(s)	764, 1183, 1655
HspAI	GCGC	1 cut(s)	519
Ksp22I	TGATCA	2 cut(s)	511, 1201
KspAI	GTTAAC	2 cut(s)	691, 1354
KspI	CCGCGG	1 cut(s)	1215
LmnI	GCTCC	1 cut(s)	880
Lsp1109I	GCAGC	4 cut(s)	191, 1669, 1766, 1787
LweI	GCATC	2 cut(s)	554, 1741
MaeI	CTAG	6 cut(s)	890, 1277, 1328, 1515, 1544, 1758
MaeII	ACGT	4 cut(s)	375, 925, 1031, 1832
MflI	RGATCY	1 cut(s)	1633
MluCI	AATT	9 cut(s)	311, 350, 416, 626, 803, 1175, 1736, 1821, 1840
MluI	ACGCGT	1 cut(s)	1135
MlyI	GAGTC	3 cut(s)	186, 1012, 1699
MmeI	TCCRAC	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	1461
MseI	TTAA	6 cut(s)	62, 624, 690, 776, 1353, 1562
MspA1I	CMGCKG	1 cut(s)	1214
MspI	CCGG	7 cut(s)	477, 656, 768, 864, 929, 1098, 1295
MvnI	CGCG	6 cut(s)	521, 1137, 1214, 1235, 1385, 1532
MwoI	GCNNNNNNNGC	6 cut(s)	735, 744, 771, 1330, 1370, 1700
NcoI	CCATGG	1 cut(s)	760
NlaIII	CATG	3 cut(s)	764, 1183, 1655
NlaIV	GGNNCC	3 cut(s)	766, 876, 1635
NmuCI	GTSAC	4 cut(s)	449, 938, 1474, 1552
NruI	TCGCGA	1 cut(s)	1235
NspV	TTCGAA	2 cut(s)	369, 1838
PagI	TCATGA	1 cut(s)	1651
PcsI	WCGNNNNNNNCGW	4 cut(s)	276, 387, 679, 1134
PdmI	GAANNNNTTC	1 cut(s)	1461
PfeI	GAWTC	7 cut(s)	249, 401, 573, 1070, 1239, 1414, 1877
PinAI	ACCGGT	1 cut(s)	767
PkrI	GCNGC	7 cut(s)	181, 184, 1326, 1659, 1756, 1799, 1802
PleI	GAGTC	3 cut(s)	186, 1012, 1699
PpsI	GAGTC	3 cut(s)	186, 1012, 1699
Ppu21I	YACGTR	1 cut(s)	1032
Psp1406I	AACGTT	1 cut(s)	1832
PspN4I	GGNNCC	3 cut(s)	766, 876, 1635
PsuI	RGATCY	1 cut(s)	1633
RruI	TCGCGA	1 cut(s)	1235
RsaI	GTAC	2 cut(s)	1034, 1523
RsaNI	GTAC	2 cut(s)	1033, 1522
SacII	CCGCGG	1 cut(s)	1215
SaqAI	TTAA	6 cut(s)	62, 624, 690, 776, 1353, 1562
SatI	GCNGC	7 cut(s)	180, 183, 1325, 1658, 1755, 1798, 1801
SchI	GAGTC	3 cut(s)	186, 1012, 1699
SfaNI	GCATC	2 cut(s)	554, 1741
Sfr303I	CCGCGG	1 cut(s)	1215
SfuI	TTCGAA	2 cut(s)	369, 1838
SgrBI	CCGCGG	1 cut(s)	1215
SmlI	CTYRAG	1 cut(s)	1587
SmoI	CTYRAG	1 cut(s)	1587
SpeI	ACTAGT	2 cut(s)	1276, 1514
Sse9I	AATT	9 cut(s)	311, 350, 416, 626, 803, 1175, 1736, 1821, 1840
SsiI	CCGC	9 cut(s)	177, 183, 342, 1212, 1214, 1324, 1532, 1611, 1797
SspMI	CTAG	6 cut(s)	890, 1277, 1328, 1515, 1544, 1758
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	8 cut(s)	272, 688, 856, 900, 954, 1037, 1582, 1790
TaiI	ACGT	4 cut(s)	378, 928, 1034, 1835
TaqI	TCGA	6 cut(s)	190, 255, 369, 682, 957, 1838
TaqII	GACCGA	2 cut(s)	371, 1332
TasI	AATT	9 cut(s)	311, 350, 416, 626, 803, 1175, 1736, 1821, 1840
TauI	GCSGC	3 cut(s)	185, 1327, 1800
TfiI	GAWTC	7 cut(s)	249, 401, 573, 1070, 1239, 1414, 1877
Tru1I	TTAA	6 cut(s)	62, 624, 690, 776, 1353, 1562
Tru9I	TTAA	6 cut(s)	62, 624, 690, 776, 1353, 1562
TscAI	CASTG	2 cut(s)	859, 903
TseFI	GTSAC	4 cut(s)	449, 938, 1474, 1552
TseI	GCWGC	4 cut(s)	179, 1657, 1754, 1800
Tsp45I	GTSAC	4 cut(s)	449, 938, 1474, 1552
TspDTI	ATGAA	3 cut(s)	874, 1168, 1640
TspGWI	ACGGA	3 cut(s)	101, 810, 1143
TspRI	CASTG	2 cut(s)	859, 903
XapI	RAATTY	4 cut(s)	416, 1175, 1736, 1840
XbaI	TCTAGA	1 cut(s)	1543
XmiI	GTMKAC	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	1461
XspI	CTAG	6 cut(s)	890, 1277, 1328, 1515, 1544, 1758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.