AT3G02065

HIT zinc finger

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
358916 .. 360889
1974 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02065.1

Sequence Viewer

Length: 1107 bp
ATGCAAGCAATTCCAGCTGCTTTAACCGGCAAAAGTCTGCTCGCCTCAGCCGACACCGGCTCTGGGAAAACAGCTTCTTTTCTTGTTCCTATTATTTCTCGTTGCACAACGTATCACTCTGAGCATCCCTCAGACCAGAGGAGGAACCCCTTGGCTATGGTTTTGGCTCCAACGAGAGAGCTCTGTGTCCAAGTTGAAGATCAGGCAAAAATGCTCGGAAAGGGACTGCCATTTAAGACTGCACTCGTTGTAGGTGGTGATCCCATGTCTGGACAACTCTACCGCATTCAGCAAGGTGTTGAATTGATCATTGGTACCCCAGGCCGGGTGGTGGACCTTCTATCAAAGCACACCATTGAACTAGATAACATCATGACGTTTGTGCTGGATGAAGTTGACTGCATGCTTCAGAGAGGCTTCAGAGATCAGGTGATGCAGATATTTCAGGCCTTGTCACAACCACAGGTCTTGCTGTTCTCTGCGACGATCTCAAGAGAGGTGGAGAAGGTGGGAGGGTCTCTAGCCAAGGAAATCATTTTGGTATCCATAGGTAATCCCAACAAGCCTAACAAGGCTGTCAACCAATTGGCCATCTGGGTAGATGCAAAGCAAAAGAAACAGAAGCTGTTTGATATACTCAGAAGTCAAAACCATTTCAAGCCCCCCGCTGTTGTTTATGTGAGTTCGAGAGTTGGAGCAGATCTCCTGGCTAATGCCATAACTGTTGTCACGGGGGTAAAAGCTCTATCGATCCATGGGGAGAAGCCAATGAAGGAGAGGAGAGACGTAATGGGATCGTTTTTGGGTGGAGAGGTGCCAGTTCTTGTATCAACGGGAGTTCTAGGCCGAGGAGTTGACCTATTGGTGGTAAGGCAGGTGATAGTGTTTGACATGCCTAGTACCATCAAGGAGTACATACATGTAATTGGCAGGGCCTCTAGGATGGGAGAGAAGGGCACTGCCATTGTGTTTGTGAATGAGGACGACAGGAACCTATTCCCTGATTTAGTTGCCGCTTTAAAAAGTAGTGGAGCAGCCATACCTAAGGAACTTATCAATTTGACATCCAGGGAAATGCACAACAAGAAGAGAAGGGTTGGGTACTGA

Protein Analysis

368

Amino Acids

40.13

Weight (kDa)

9.48

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 2 - 170 4.1e-41 DEAD/DEAH box helicase
Helicase_C PF00271 205 - 316 2.9e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013476)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 865
Acc36I ACCTGC 1 cut(s) 865
Acc65I GGTACC 1 cut(s) 314
AccB1I GGYRCC 2 cut(s) 314, 814
AciI CCGC 3 cut(s) 283, 666, 1014
AclWI GGATC 3 cut(s) 254, 745, 802
AcoI YGGCCR 1 cut(s) 588
AcuI CTGAAG 2 cut(s) 392, 403
AfaI GTAC 4 cut(s) 316, 901, 914, 1103
AfiI CCNNNNNNNGG 6 cut(s) 63, 269, 324, 325, 331, 865
AflIII ACRYGT 1 cut(s) 919
AgsI TTSAA 4 cut(s) 197, 302, 359, 658
AjnI CCWGG 3 cut(s) 319, 705, 1067
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 5 cut(s) 17, 74, 181, 625, 743
AluI AGCT 5 cut(s) 17, 74, 181, 625, 743
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 522, 777
AlwI GGATC 3 cut(s) 254, 745, 802
AlwNI CAGNNNCTG 1 cut(s) 625
AoxI GGCC 5 cut(s) 322, 447, 588, 844, 933
ApeKI GCWGC 2 cut(s) 17, 1034
Asp700I GAANNNNTTC 1 cut(s) 995
Asp718I GGTACC 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 334, 933
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 3 cut(s) 269, 442, 889
AvaII GGWCC 1 cut(s) 334
AxyI CCTNAGG 1 cut(s) 1044
BaeGI GKGCMC 1 cut(s) 959
BalI TGGCCA 1 cut(s) 590
BanI GGYRCC 2 cut(s) 314, 814
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 4, 1046
BccI CCATC 3 cut(s) 599, 911, 937
BciT130I CCWGG 3 cut(s) 321, 707, 1069
BciVI GTATCC 1 cut(s) 553
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 2 cut(s) 522, 777
BfaI CTAG 5 cut(s) 362, 521, 842, 897, 939
BfuAI ACCTGC 1 cut(s) 865
BfuI GTATCC 1 cut(s) 553
BglII AGATCT 1 cut(s) 700
BisI GCNGC 3 cut(s) 18, 1014, 1035
BlsI GCNGC 3 cut(s) 19, 1015, 1036
Bme1390I CCNGG 4 cut(s) 321, 326, 707, 1069
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 334, 933
BmiI GGNNCC 5 cut(s) 146, 168, 316, 816, 992
BmrFI CCNGG 4 cut(s) 321, 326, 707, 1069
BmsI GCATC 3 cut(s) 133, 423, 592
BplI GAGNNNNNCTC 4 cut(s) 113, 145, 687, 719
Bpu10I CCTNAGC 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 475
BpuMI CCSGG 1 cut(s) 326
Bsa29I ATCGAT 1 cut(s) 749
BsaI GGTCTC 1 cut(s) 522
BsaJI CCNNGG 6 cut(s) 150, 319, 525, 754, 847, 1068
Bsc4I CCNNNNNNNGG 6 cut(s) 63, 269, 324, 325, 331, 865
Bse118I RCCGGY 2 cut(s) 26, 56
Bse1I ACTGG 1 cut(s) 818
Bse21I CCTNAGG 1 cut(s) 1044
BseBI CCWGG 3 cut(s) 321, 707, 1069
BseCI ATCGAT 1 cut(s) 749
BseDI CCNNGG 6 cut(s) 150, 319, 525, 754, 847, 1068
BseGI GGATG 4 cut(s) 124, 394, 948, 1064
BseLI CCNNNNNNNGG 6 cut(s) 63, 269, 324, 325, 331, 865
BseMII CTCAG 4 cut(s) 60, 111, 144, 652
BseNI ACTGG 1 cut(s) 818
BseRI GAGGAG 3 cut(s) 154, 793, 864
BseSI GKGCMC 1 cut(s) 959
BseXI GCAGC 2 cut(s) 4, 1046
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 5 cut(s) 324, 449, 590, 846, 935
BshNI GGYRCC 2 cut(s) 314, 814
BshVI ATCGAT 1 cut(s) 749
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 3 cut(s) 27, 57, 325
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 6 cut(s) 63, 269, 324, 325, 331, 865
BsmAI GTCTC 2 cut(s) 522, 777
BsmBI CGTCTC 1 cut(s) 777
BsmFI GGGAC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 285
BsnI GGCC 5 cut(s) 324, 449, 590, 846, 935
Bso31I GGTCTC 1 cut(s) 522
Bsp1286I GDGCHC 2 cut(s) 183, 959
Bsp143I GATC 8 cut(s) 199, 259, 306, 424, 486, 700, 750, 794
Bsp19I CCATGG 1 cut(s) 754
BspACI CCGC 3 cut(s) 283, 666, 1014
BspANI GGCC 5 cut(s) 324, 449, 590, 846, 935
BspCNI CTCAG 4 cut(s) 59, 112, 143, 651
BspDI ATCGAT 1 cut(s) 749
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 5 cut(s) 146, 168, 316, 816, 992
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 3 cut(s) 254, 745, 802
BspT107I GGYRCC 2 cut(s) 314, 814
BspTNI GGTCTC 1 cut(s) 522
BsrFI RCCGGY 2 cut(s) 26, 56
BsrI ACTGG 1 cut(s) 818
BssAI RCCGGY 2 cut(s) 26, 56
BssECI CCNNGG 6 cut(s) 150, 319, 525, 754, 847, 1068
BssMI GATC 8 cut(s) 199, 259, 306, 424, 486, 700, 750, 794
BssT1I CCWWGG 3 cut(s) 150, 525, 754
Bst2UI CCWGG 3 cut(s) 321, 707, 1069
Bst4CI ACNGT 1 cut(s) 724
Bst6I CTCTTC 1 cut(s) 1082
BstC8I GCNNGC 3 cut(s) 6, 42, 404
BstDEI CTNAG 5 cut(s) 46, 120, 130, 638, 1044
BstDSI CCRYGG 1 cut(s) 754
BstF5I GGATG 4 cut(s) 124, 394, 948, 1064
BstKTI GATC 8 cut(s) 202, 262, 309, 427, 489, 703, 753, 797
BstMAI GTCTC 2 cut(s) 522, 777
BstMBI GATC 8 cut(s) 199, 259, 306, 424, 486, 700, 750, 794
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 3 cut(s) 321, 707, 1069
BstNSI RCATGY 3 cut(s) 406, 895, 923
BstSCI CCNGG 4 cut(s) 319, 324, 705, 1067
BstSLI GKGCMC 1 cut(s) 959
BstV1I GCAGC 2 cut(s) 4, 1046
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
Bsu15I ATCGAT 1 cut(s) 749
Bsu36I CCTNAGG 1 cut(s) 1044
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 5 cut(s) 324, 449, 590, 846, 935
BsuTUI ATCGAT 1 cut(s) 749
BtgI CCRYGG 1 cut(s) 754
BtsCI GGATG 4 cut(s) 124, 394, 948, 1064
BtsI GCAGTG 1 cut(s) 957
BtsIMutI CAGTG 1 cut(s) 957
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 3 cut(s) 6, 42, 404
CaiI CAGNNNCTG 1 cut(s) 625
CciI TCATGA 1 cut(s) 372
Cfr10I RCCGGY 2 cut(s) 26, 56
Cfr13I GGNCC 2 cut(s) 334, 933
ClaI ATCGAT 1 cut(s) 749
Csp6I GTAC 4 cut(s) 315, 900, 913, 1102
CspCI CAANNNNNGTGG 4 cut(s) 450, 480, 485, 515
CviAII CATG 6 cut(s) 265, 373, 403, 755, 892, 920
CviQI GTAC 4 cut(s) 315, 900, 913, 1102
DdeI CTNAG 5 cut(s) 46, 120, 130, 638, 1044
DpnI GATC 8 cut(s) 201, 261, 308, 426, 488, 702, 752, 796
DpnII GATC 8 cut(s) 199, 259, 306, 424, 486, 700, 750, 794
DraI TTTAAA 1 cut(s) 1020
EaeI YGGCCR 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 1082
EarI CTCTTC 1 cut(s) 1082
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 3 cut(s) 150, 525, 754
Eco147I AGGCCT 1 cut(s) 449
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 2 cut(s) 392, 403
Eco81I CCTNAGG 1 cut(s) 1044
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 933
EcoRII CCWGG 3 cut(s) 319, 705, 1067
EcoT14I CCWWGG 3 cut(s) 150, 525, 754
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 3 cut(s) 150, 525, 754
Esp3I CGTCTC 1 cut(s) 777
FaeI CATG 6 cut(s) 268, 376, 406, 758, 895, 923
FaqI GGGAC 1 cut(s) 237
FatI CATG 6 cut(s) 264, 372, 402, 754, 891, 919
FauI CCCGC 1 cut(s) 673
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 3 cut(s) 18, 1014, 1035
FokI GGATG 4 cut(s) 111, 401, 955, 1051
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 3 cut(s) 18, 1014, 1035
FspBI CTAG 5 cut(s) 362, 521, 842, 897, 939
GluI GCNGC 3 cut(s) 18, 1014, 1035
HaeIII GGCC 5 cut(s) 324, 449, 590, 846, 935
HapII CCGG 3 cut(s) 27, 57, 325
Hin1II CATG 6 cut(s) 268, 376, 406, 758, 895, 923
HincII GTYRAC 3 cut(s) 397, 580, 856
HindII GTYRAC 3 cut(s) 397, 580, 856
HpaII CCGG 3 cut(s) 27, 57, 325
HphI GGTGA 3 cut(s) 269, 442, 889
Hpy166II GTNNAC 4 cut(s) 334, 397, 580, 856
Hpy188I TCNGA 6 cut(s) 121, 133, 218, 411, 422, 641
Hpy188III TCNNGA 4 cut(s) 270, 373, 492, 687
Hpy8I GTNNAC 4 cut(s) 334, 397, 580, 856
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 5 cut(s) 347, 499, 766, 946, 1086
HpyCH4III ACNGT 1 cut(s) 724
HpyCH4IV ACGT 3 cut(s) 110, 377, 786
HpyCH4V TGCA 7 cut(s) 4, 105, 242, 402, 436, 605, 1078
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 5 cut(s) 46, 120, 130, 638, 1044
HpySE526I ACGT 3 cut(s) 110, 377, 786
Hsp92II CATG 6 cut(s) 268, 376, 406, 758, 895, 923
KpnI GGTACC 1 cut(s) 318
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 8 cut(s) 199, 259, 306, 424, 486, 700, 750, 794
LmnI GCTCC 3 cut(s) 172, 695, 1031
Lsp1109I GCAGC 2 cut(s) 4, 1046
LweI GCATC 3 cut(s) 133, 423, 592
MaeI CTAG 5 cut(s) 362, 521, 842, 897, 939
MaeII ACGT 3 cut(s) 110, 377, 786
MaeIII GTNAC 2 cut(s) 453, 727
MalI GATC 8 cut(s) 201, 261, 308, 426, 488, 702, 752, 796
MboI GATC 8 cut(s) 199, 259, 306, 424, 486, 700, 750, 794
MboII GAAGA 2 cut(s) 209, 1099
MfeI CAATTG 1 cut(s) 584
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 2 cut(s) 183, 959
MlsI TGGCCA 1 cut(s) 590
MluCI AATT 5 cut(s) 9, 302, 584, 924, 1057
MluNI TGGCCA 1 cut(s) 590
MmeI TCCRAC 2 cut(s) 194, 673
Mox20I TGGCCA 1 cut(s) 590
MroXI GAANNNNTTC 1 cut(s) 995
MscI TGGCCA 1 cut(s) 590
MseI TTAA 3 cut(s) 23, 234, 1019
Msp20I TGGCCA 1 cut(s) 590
MspA1I CMGCKG 2 cut(s) 17, 668
MspI CCGG 3 cut(s) 27, 57, 325
MspR9I CCNGG 4 cut(s) 321, 326, 707, 1069
MunI CAATTG 1 cut(s) 584
Mva1269I GAATGC 1 cut(s) 285
MvaI CCWGG 3 cut(s) 321, 707, 1069
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 326
NcoI CCATGG 1 cut(s) 754
NdeII GATC 8 cut(s) 199, 259, 306, 424, 486, 700, 750, 794
NlaIII CATG 6 cut(s) 268, 376, 406, 758, 895, 923
NlaIV GGNNCC 5 cut(s) 146, 168, 316, 816, 992
NmeAIII GCCGAG 1 cut(s) 872
NmuCI GTSAC 2 cut(s) 453, 727
NspI RCATGY 3 cut(s) 406, 895, 923
PaeI GCATGC 1 cut(s) 406
PagI TCATGA 1 cut(s) 372
PaqCI CACCTGC 1 cut(s) 865
PceI AGGCCT 1 cut(s) 449
PciI ACATGT 1 cut(s) 919
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 995
PkrI GCNGC 3 cut(s) 19, 1015, 1036
PscI ACATGT 1 cut(s) 919
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 3 cut(s) 319, 705, 1067
PspGI CCWGG 3 cut(s) 319, 705, 1067
PspN4I GGNNCC 5 cut(s) 146, 168, 316, 816, 992
PspPI GGNCC 2 cut(s) 334, 933
PstNI CAGNNNCTG 1 cut(s) 625
PsuI RGATCY 1 cut(s) 700
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 4 cut(s) 316, 901, 914, 1103
RsaNI GTAC 4 cut(s) 315, 900, 913, 1102
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 23, 234, 1019
SatI GCNGC 3 cut(s) 18, 1014, 1035
Sau3AI GATC 8 cut(s) 199, 259, 306, 424, 486, 700, 750, 794
Sau96I GGNCC 2 cut(s) 334, 933
ScrFI CCNGG 4 cut(s) 321, 326, 707, 1069
SduI GDGCHC 2 cut(s) 183, 959
SfaNI GCATC 3 cut(s) 133, 423, 592
SinI GGWCC 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
SphI GCATGC 1 cut(s) 406
Sse9I AATT 5 cut(s) 9, 302, 584, 924, 1057
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 3 cut(s) 283, 666, 1014
SspMI CTAG 5 cut(s) 362, 521, 842, 897, 939
SstI GAGCTC 1 cut(s) 183
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 4 cut(s) 319, 324, 705, 1067
StyI CCWWGG 3 cut(s) 150, 525, 754
TaaI ACNGT 1 cut(s) 724
TaiI ACGT 3 cut(s) 113, 380, 789
TaqI TCGA 2 cut(s) 686, 749
TasI AATT 5 cut(s) 9, 302, 584, 924, 1057
TatI WGTACW 1 cut(s) 912
TauI GCSGC 1 cut(s) 1016
Tru1I TTAA 3 cut(s) 23, 234, 1019
Tru9I TTAA 3 cut(s) 23, 234, 1019
TscAI CASTG 1 cut(s) 964
TseFI GTSAC 2 cut(s) 453, 727
TseI GCWGC 2 cut(s) 17, 1034
Tsp45I GTSAC 2 cut(s) 453, 727
TspDTI ATGAA 2 cut(s) 405, 785
TspRI CASTG 1 cut(s) 964
VpaK11BI GGWCC 1 cut(s) 334
XceI RCATGY 3 cut(s) 406, 895, 923
XmnI GAANNNNTTC 1 cut(s) 995
XspI CTAG 5 cut(s) 362, 521, 842, 897, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.