HIT zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02065 AT3G02065 AT3G02065 |
| fragaria_vesca | FvH4_6g35850 FvH4_6g35850 |
| malus_domestica | MD17G1003800.v1.1 |
| pyrus_communis | pycom17g00050 |
| rosa_chinensis | RchiOBHm_Chr2g0147891 |
| rosa_laevigata | RLG00000020290 |
| rosa_multiflora | Rmu_sc0000308.1_g000058 |
| rosa_roxburghii | Rroxscaffold_2G00099220 |
| rosa_rugosa | Rorug02G0402700 Rorug02G0402800 |
| rosa_samantha | Rh2AG459700 Rh2BG473000 Rh2CG447000 Rh2DG481900 |
| rosa_wichuraiana | Rw2G037600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 865 |
| Acc36I | ACCTGC | 1 cut(s) | 865 |
| Acc65I | GGTACC | 1 cut(s) | 314 |
| AccB1I | GGYRCC | 2 cut(s) | 314, 814 |
| AciI | CCGC | 3 cut(s) | 283, 666, 1014 |
| AclWI | GGATC | 3 cut(s) | 254, 745, 802 |
| AcoI | YGGCCR | 1 cut(s) | 588 |
| AcuI | CTGAAG | 2 cut(s) | 392, 403 |
| AfaI | GTAC | 4 cut(s) | 316, 901, 914, 1103 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 63, 269, 324, 325, 331, 865 |
| AflIII | ACRYGT | 1 cut(s) | 919 |
| AgsI | TTSAA | 4 cut(s) | 197, 302, 359, 658 |
| AjnI | CCWGG | 3 cut(s) | 319, 705, 1067 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 294, 326 |
| AluBI | AGCT | 5 cut(s) | 17, 74, 181, 625, 743 |
| AluI | AGCT | 5 cut(s) | 17, 74, 181, 625, 743 |
| Alw21I | GWGCWC | 1 cut(s) | 183 |
| Alw26I | GTCTC | 2 cut(s) | 522, 777 |
| AlwI | GGATC | 3 cut(s) | 254, 745, 802 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 625 |
| AoxI | GGCC | 5 cut(s) | 322, 447, 588, 844, 933 |
| ApeKI | GCWGC | 2 cut(s) | 17, 1034 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 995 |
| Asp718I | GGTACC | 1 cut(s) | 314 |
| AspS9I | GGNCC | 2 cut(s) | 334, 933 |
| AsuC2I | CCSGG | 1 cut(s) | 326 |
| AsuHPI | GGTGA | 3 cut(s) | 269, 442, 889 |
| AvaII | GGWCC | 1 cut(s) | 334 |
| AxyI | CCTNAGG | 1 cut(s) | 1044 |
| BaeGI | GKGCMC | 1 cut(s) | 959 |
| BalI | TGGCCA | 1 cut(s) | 590 |
| BanI | GGYRCC | 2 cut(s) | 314, 814 |
| BanII | GRGCYC | 1 cut(s) | 183 |
| Bbv12I | GWGCWC | 1 cut(s) | 183 |
| BbvCI | CCTCAGC | 1 cut(s) | 46 |
| BbvI | GCAGC | 2 cut(s) | 4, 1046 |
| BccI | CCATC | 3 cut(s) | 599, 911, 937 |
| BciT130I | CCWGG | 3 cut(s) | 321, 707, 1069 |
| BciVI | GTATCC | 1 cut(s) | 553 |
| BclI | TGATCA | 1 cut(s) | 306 |
| BcnI | CCSGG | 1 cut(s) | 326 |
| BcoDI | GTCTC | 2 cut(s) | 522, 777 |
| BfaI | CTAG | 5 cut(s) | 362, 521, 842, 897, 939 |
| BfuAI | ACCTGC | 1 cut(s) | 865 |
| BfuI | GTATCC | 1 cut(s) | 553 |
| BglII | AGATCT | 1 cut(s) | 700 |
| BisI | GCNGC | 3 cut(s) | 18, 1014, 1035 |
| BlsI | GCNGC | 3 cut(s) | 19, 1015, 1036 |
| Bme1390I | CCNGG | 4 cut(s) | 321, 326, 707, 1069 |
| Bme18I | GGWCC | 1 cut(s) | 334 |
| BmgT120I | GGNCC | 2 cut(s) | 334, 933 |
| BmiI | GGNNCC | 5 cut(s) | 146, 168, 316, 816, 992 |
| BmrFI | CCNGG | 4 cut(s) | 321, 326, 707, 1069 |
| BmsI | GCATC | 3 cut(s) | 133, 423, 592 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 113, 145, 687, 719 |
| Bpu10I | CCTNAGC | 1 cut(s) | 46 |
| BpuEI | CTTGAG | 1 cut(s) | 475 |
| BpuMI | CCSGG | 1 cut(s) | 326 |
| Bsa29I | ATCGAT | 1 cut(s) | 749 |
| BsaI | GGTCTC | 1 cut(s) | 522 |
| BsaJI | CCNNGG | 6 cut(s) | 150, 319, 525, 754, 847, 1068 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 63, 269, 324, 325, 331, 865 |
| Bse118I | RCCGGY | 2 cut(s) | 26, 56 |
| Bse1I | ACTGG | 1 cut(s) | 818 |
| Bse21I | CCTNAGG | 1 cut(s) | 1044 |
| BseBI | CCWGG | 3 cut(s) | 321, 707, 1069 |
| BseCI | ATCGAT | 1 cut(s) | 749 |
| BseDI | CCNNGG | 6 cut(s) | 150, 319, 525, 754, 847, 1068 |
| BseGI | GGATG | 4 cut(s) | 124, 394, 948, 1064 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 63, 269, 324, 325, 331, 865 |
| BseMII | CTCAG | 4 cut(s) | 60, 111, 144, 652 |
| BseNI | ACTGG | 1 cut(s) | 818 |
| BseRI | GAGGAG | 3 cut(s) | 154, 793, 864 |
| BseSI | GKGCMC | 1 cut(s) | 959 |
| BseXI | GCAGC | 2 cut(s) | 4, 1046 |
| BsgI | GTGCAG | 1 cut(s) | 225 |
| BshFI | GGCC | 5 cut(s) | 324, 449, 590, 846, 935 |
| BshNI | GGYRCC | 2 cut(s) | 314, 814 |
| BshVI | ATCGAT | 1 cut(s) | 749 |
| BsiHKAI | GWGCWC | 1 cut(s) | 183 |
| BsiSI | CCGG | 3 cut(s) | 27, 57, 325 |
| BslFI | GGGAC | 1 cut(s) | 237 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 63, 269, 324, 325, 331, 865 |
| BsmAI | GTCTC | 2 cut(s) | 522, 777 |
| BsmBI | CGTCTC | 1 cut(s) | 777 |
| BsmFI | GGGAC | 1 cut(s) | 237 |
| BsmI | GAATGC | 1 cut(s) | 285 |
| BsnI | GGCC | 5 cut(s) | 324, 449, 590, 846, 935 |
| Bso31I | GGTCTC | 1 cut(s) | 522 |
| Bsp1286I | GDGCHC | 2 cut(s) | 183, 959 |
| Bsp143I | GATC | 8 cut(s) | 199, 259, 306, 424, 486, 700, 750, 794 |
| Bsp19I | CCATGG | 1 cut(s) | 754 |
| BspACI | CCGC | 3 cut(s) | 283, 666, 1014 |
| BspANI | GGCC | 5 cut(s) | 324, 449, 590, 846, 935 |
| BspCNI | CTCAG | 4 cut(s) | 59, 112, 143, 651 |
| BspDI | ATCGAT | 1 cut(s) | 749 |
| BspHI | TCATGA | 1 cut(s) | 372 |
| BspLI | GGNNCC | 5 cut(s) | 146, 168, 316, 816, 992 |
| BspMI | ACCTGC | 1 cut(s) | 865 |
| BspPI | GGATC | 3 cut(s) | 254, 745, 802 |
| BspT107I | GGYRCC | 2 cut(s) | 314, 814 |
| BspTNI | GGTCTC | 1 cut(s) | 522 |
| BsrFI | RCCGGY | 2 cut(s) | 26, 56 |
| BsrI | ACTGG | 1 cut(s) | 818 |
| BssAI | RCCGGY | 2 cut(s) | 26, 56 |
| BssECI | CCNNGG | 6 cut(s) | 150, 319, 525, 754, 847, 1068 |
| BssMI | GATC | 8 cut(s) | 199, 259, 306, 424, 486, 700, 750, 794 |
| BssT1I | CCWWGG | 3 cut(s) | 150, 525, 754 |
| Bst2UI | CCWGG | 3 cut(s) | 321, 707, 1069 |
| Bst4CI | ACNGT | 1 cut(s) | 724 |
| Bst6I | CTCTTC | 1 cut(s) | 1082 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 42, 404 |
| BstDEI | CTNAG | 5 cut(s) | 46, 120, 130, 638, 1044 |
| BstDSI | CCRYGG | 1 cut(s) | 754 |
| BstF5I | GGATG | 4 cut(s) | 124, 394, 948, 1064 |
| BstKTI | GATC | 8 cut(s) | 202, 262, 309, 427, 489, 703, 753, 797 |
| BstMAI | GTCTC | 2 cut(s) | 522, 777 |
| BstMBI | GATC | 8 cut(s) | 199, 259, 306, 424, 486, 700, 750, 794 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 14 |
| BstNI | CCWGG | 3 cut(s) | 321, 707, 1069 |
| BstNSI | RCATGY | 3 cut(s) | 406, 895, 923 |
| BstSCI | CCNGG | 4 cut(s) | 319, 324, 705, 1067 |
| BstSLI | GKGCMC | 1 cut(s) | 959 |
| BstV1I | GCAGC | 2 cut(s) | 4, 1046 |
| BstX2I | RGATCY | 1 cut(s) | 700 |
| BstYI | RGATCY | 1 cut(s) | 700 |
| Bsu15I | ATCGAT | 1 cut(s) | 749 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1044 |
| BsuI | GTATCC | 1 cut(s) | 553 |
| BsuRI | GGCC | 5 cut(s) | 324, 449, 590, 846, 935 |
| BsuTUI | ATCGAT | 1 cut(s) | 749 |
| BtgI | CCRYGG | 1 cut(s) | 754 |
| BtsCI | GGATG | 4 cut(s) | 124, 394, 948, 1064 |
| BtsI | GCAGTG | 1 cut(s) | 957 |
| BtsIMutI | CAGTG | 1 cut(s) | 957 |
| BveI | ACCTGC | 1 cut(s) | 865 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 42, 404 |
| CaiI | CAGNNNCTG | 1 cut(s) | 625 |
| CciI | TCATGA | 1 cut(s) | 372 |
| Cfr10I | RCCGGY | 2 cut(s) | 26, 56 |
| Cfr13I | GGNCC | 2 cut(s) | 334, 933 |
| ClaI | ATCGAT | 1 cut(s) | 749 |
| Csp6I | GTAC | 4 cut(s) | 315, 900, 913, 1102 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 450, 480, 485, 515 |
| CviAII | CATG | 6 cut(s) | 265, 373, 403, 755, 892, 920 |
| CviQI | GTAC | 4 cut(s) | 315, 900, 913, 1102 |
| DdeI | CTNAG | 5 cut(s) | 46, 120, 130, 638, 1044 |
| DpnI | GATC | 8 cut(s) | 201, 261, 308, 426, 488, 702, 752, 796 |
| DpnII | GATC | 8 cut(s) | 199, 259, 306, 424, 486, 700, 750, 794 |
| DraI | TTTAAA | 1 cut(s) | 1020 |
| EaeI | YGGCCR | 1 cut(s) | 588 |
| Eam1104I | CTCTTC | 1 cut(s) | 1082 |
| EarI | CTCTTC | 1 cut(s) | 1082 |
| Ecl136II | GAGCTC | 1 cut(s) | 181 |
| Eco130I | CCWWGG | 3 cut(s) | 150, 525, 754 |
| Eco147I | AGGCCT | 1 cut(s) | 449 |
| Eco24I | GRGCYC | 1 cut(s) | 183 |
| Eco31I | GGTCTC | 1 cut(s) | 522 |
| Eco47I | GGWCC | 1 cut(s) | 334 |
| Eco53kI | GAGCTC | 1 cut(s) | 181 |
| Eco57I | CTGAAG | 2 cut(s) | 392, 403 |
| Eco81I | CCTNAGG | 1 cut(s) | 1044 |
| EcoICRI | GAGCTC | 1 cut(s) | 181 |
| EcoO109I | RGGNCCY | 1 cut(s) | 933 |
| EcoRII | CCWGG | 3 cut(s) | 319, 705, 1067 |
| EcoT14I | CCWWGG | 3 cut(s) | 150, 525, 754 |
| EcoT38I | GRGCYC | 1 cut(s) | 183 |
| ErhI | CCWWGG | 3 cut(s) | 150, 525, 754 |
| Esp3I | CGTCTC | 1 cut(s) | 777 |
| FaeI | CATG | 6 cut(s) | 268, 376, 406, 758, 895, 923 |
| FaqI | GGGAC | 1 cut(s) | 237 |
| FatI | CATG | 6 cut(s) | 264, 372, 402, 754, 891, 919 |
| FauI | CCCGC | 1 cut(s) | 673 |
| FbaI | TGATCA | 1 cut(s) | 306 |
| Fnu4HI | GCNGC | 3 cut(s) | 18, 1014, 1035 |
| FokI | GGATG | 4 cut(s) | 111, 401, 955, 1051 |
| FriOI | GRGCYC | 1 cut(s) | 183 |
| Fsp4HI | GCNGC | 3 cut(s) | 18, 1014, 1035 |
| FspBI | CTAG | 5 cut(s) | 362, 521, 842, 897, 939 |
| GluI | GCNGC | 3 cut(s) | 18, 1014, 1035 |
| HaeIII | GGCC | 5 cut(s) | 324, 449, 590, 846, 935 |
| HapII | CCGG | 3 cut(s) | 27, 57, 325 |
| Hin1II | CATG | 6 cut(s) | 268, 376, 406, 758, 895, 923 |
| HincII | GTYRAC | 3 cut(s) | 397, 580, 856 |
| HindII | GTYRAC | 3 cut(s) | 397, 580, 856 |
| HpaII | CCGG | 3 cut(s) | 27, 57, 325 |
| HphI | GGTGA | 3 cut(s) | 269, 442, 889 |
| Hpy166II | GTNNAC | 4 cut(s) | 334, 397, 580, 856 |
| Hpy188I | TCNGA | 6 cut(s) | 121, 133, 218, 411, 422, 641 |
| Hpy188III | TCNNGA | 4 cut(s) | 270, 373, 492, 687 |
| Hpy8I | GTNNAC | 4 cut(s) | 334, 397, 580, 856 |
| Hpy99I | CGWCG | 1 cut(s) | 487 |
| HpyAV | CCTTC | 5 cut(s) | 347, 499, 766, 946, 1086 |
| HpyCH4III | ACNGT | 1 cut(s) | 724 |
| HpyCH4IV | ACGT | 3 cut(s) | 110, 377, 786 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 105, 242, 402, 436, 605, 1078 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 14 |
| HpyF3I | CTNAG | 5 cut(s) | 46, 120, 130, 638, 1044 |
| HpySE526I | ACGT | 3 cut(s) | 110, 377, 786 |
| Hsp92II | CATG | 6 cut(s) | 268, 376, 406, 758, 895, 923 |
| KpnI | GGTACC | 1 cut(s) | 318 |
| Ksp22I | TGATCA | 1 cut(s) | 306 |
| Kzo9I | GATC | 8 cut(s) | 199, 259, 306, 424, 486, 700, 750, 794 |
| LmnI | GCTCC | 3 cut(s) | 172, 695, 1031 |
| Lsp1109I | GCAGC | 2 cut(s) | 4, 1046 |
| LweI | GCATC | 3 cut(s) | 133, 423, 592 |
| MaeI | CTAG | 5 cut(s) | 362, 521, 842, 897, 939 |
| MaeII | ACGT | 3 cut(s) | 110, 377, 786 |
| MaeIII | GTNAC | 2 cut(s) | 453, 727 |
| MalI | GATC | 8 cut(s) | 201, 261, 308, 426, 488, 702, 752, 796 |
| MboI | GATC | 8 cut(s) | 199, 259, 306, 424, 486, 700, 750, 794 |
| MboII | GAAGA | 2 cut(s) | 209, 1099 |
| MfeI | CAATTG | 1 cut(s) | 584 |
| MflI | RGATCY | 1 cut(s) | 700 |
| MhlI | GDGCHC | 2 cut(s) | 183, 959 |
| MlsI | TGGCCA | 1 cut(s) | 590 |
| MluCI | AATT | 5 cut(s) | 9, 302, 584, 924, 1057 |
| MluNI | TGGCCA | 1 cut(s) | 590 |
| MmeI | TCCRAC | 2 cut(s) | 194, 673 |
| Mox20I | TGGCCA | 1 cut(s) | 590 |
| MroXI | GAANNNNTTC | 1 cut(s) | 995 |
| MscI | TGGCCA | 1 cut(s) | 590 |
| MseI | TTAA | 3 cut(s) | 23, 234, 1019 |
| Msp20I | TGGCCA | 1 cut(s) | 590 |
| MspA1I | CMGCKG | 2 cut(s) | 17, 668 |
| MspI | CCGG | 3 cut(s) | 27, 57, 325 |
| MspR9I | CCNGG | 4 cut(s) | 321, 326, 707, 1069 |
| MunI | CAATTG | 1 cut(s) | 584 |
| Mva1269I | GAATGC | 1 cut(s) | 285 |
| MvaI | CCWGG | 3 cut(s) | 321, 707, 1069 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 14 |
| NciI | CCSGG | 1 cut(s) | 326 |
| NcoI | CCATGG | 1 cut(s) | 754 |
| NdeII | GATC | 8 cut(s) | 199, 259, 306, 424, 486, 700, 750, 794 |
| NlaIII | CATG | 6 cut(s) | 268, 376, 406, 758, 895, 923 |
| NlaIV | GGNNCC | 5 cut(s) | 146, 168, 316, 816, 992 |
| NmeAIII | GCCGAG | 1 cut(s) | 872 |
| NmuCI | GTSAC | 2 cut(s) | 453, 727 |
| NspI | RCATGY | 3 cut(s) | 406, 895, 923 |
| PaeI | GCATGC | 1 cut(s) | 406 |
| PagI | TCATGA | 1 cut(s) | 372 |
| PaqCI | CACCTGC | 1 cut(s) | 865 |
| PceI | AGGCCT | 1 cut(s) | 449 |
| PciI | ACATGT | 1 cut(s) | 919 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 48 |
| PctI | GAATGC | 1 cut(s) | 285 |
| PdmI | GAANNNNTTC | 1 cut(s) | 995 |
| PkrI | GCNGC | 3 cut(s) | 19, 1015, 1036 |
| PscI | ACATGT | 1 cut(s) | 919 |
| Psp124BI | GAGCTC | 1 cut(s) | 183 |
| Psp6I | CCWGG | 3 cut(s) | 319, 705, 1067 |
| PspGI | CCWGG | 3 cut(s) | 319, 705, 1067 |
| PspN4I | GGNNCC | 5 cut(s) | 146, 168, 316, 816, 992 |
| PspPI | GGNCC | 2 cut(s) | 334, 933 |
| PstNI | CAGNNNCTG | 1 cut(s) | 625 |
| PsuI | RGATCY | 1 cut(s) | 700 |
| PvuII | CAGCTG | 1 cut(s) | 17 |
| RsaI | GTAC | 4 cut(s) | 316, 901, 914, 1103 |
| RsaNI | GTAC | 4 cut(s) | 315, 900, 913, 1102 |
| SacI | GAGCTC | 1 cut(s) | 183 |
| SaqAI | TTAA | 3 cut(s) | 23, 234, 1019 |
| SatI | GCNGC | 3 cut(s) | 18, 1014, 1035 |
| Sau3AI | GATC | 8 cut(s) | 199, 259, 306, 424, 486, 700, 750, 794 |
| Sau96I | GGNCC | 2 cut(s) | 334, 933 |
| ScrFI | CCNGG | 4 cut(s) | 321, 326, 707, 1069 |
| SduI | GDGCHC | 2 cut(s) | 183, 959 |
| SfaNI | GCATC | 3 cut(s) | 133, 423, 592 |
| SinI | GGWCC | 1 cut(s) | 334 |
| SmlI | CTYRAG | 1 cut(s) | 490 |
| SmoI | CTYRAG | 1 cut(s) | 490 |
| SphI | GCATGC | 1 cut(s) | 406 |
| Sse9I | AATT | 5 cut(s) | 9, 302, 584, 924, 1057 |
| SseBI | AGGCCT | 1 cut(s) | 449 |
| SsiI | CCGC | 3 cut(s) | 283, 666, 1014 |
| SspMI | CTAG | 5 cut(s) | 362, 521, 842, 897, 939 |
| SstI | GAGCTC | 1 cut(s) | 183 |
| StuI | AGGCCT | 1 cut(s) | 449 |
| StyD4I | CCNGG | 4 cut(s) | 319, 324, 705, 1067 |
| StyI | CCWWGG | 3 cut(s) | 150, 525, 754 |
| TaaI | ACNGT | 1 cut(s) | 724 |
| TaiI | ACGT | 3 cut(s) | 113, 380, 789 |
| TaqI | TCGA | 2 cut(s) | 686, 749 |
| TasI | AATT | 5 cut(s) | 9, 302, 584, 924, 1057 |
| TatI | WGTACW | 1 cut(s) | 912 |
| TauI | GCSGC | 1 cut(s) | 1016 |
| Tru1I | TTAA | 3 cut(s) | 23, 234, 1019 |
| Tru9I | TTAA | 3 cut(s) | 23, 234, 1019 |
| TscAI | CASTG | 1 cut(s) | 964 |
| TseFI | GTSAC | 2 cut(s) | 453, 727 |
| TseI | GCWGC | 2 cut(s) | 17, 1034 |
| Tsp45I | GTSAC | 2 cut(s) | 453, 727 |
| TspDTI | ATGAA | 2 cut(s) | 405, 785 |
| TspRI | CASTG | 1 cut(s) | 964 |
| VpaK11BI | GGWCC | 1 cut(s) | 334 |
| XceI | RCATGY | 3 cut(s) | 406, 895, 923 |
| XmnI | GAANNNNTTC | 1 cut(s) | 995 |
| XspI | CTAG | 5 cut(s) | 362, 521, 842, 897, 939 |