Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013476

Physical Location & Seq

Genomic Coordinates Forward (+)

20821101 .. 20824942

Gene Structure 3842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00099220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

ATGAACATTACCGATGTTGACCCTCCTCTTTCCTTGCGGAGCTCCCGTCCATCGTTTCGCAGAACACCACCCAGGGAAGGTGGTGGATGGCAAGCGACGCCGCTTGGTGACCGGCACGATTCCCATCTCTTTAATAACTTCAAAGTGCTTAACCAAGCTAAGATTCTGAACCTACCTTTTGGTTCTGCGCTACTCAATTATCCTCAATCTCATACAATGGAACACGAGTACAAAGATGGCCAATGCAAGAGTTCAGTGATGGCAACATGCAGTGATGAAATAAAGTTAAAGAAAGATCCAGAGACCAAAAGAGAACCTCTTCCAGGAGAGCCTAAATGTGTTATTTGCAGCCGTTATGGTGAGTATATATGTGATCAGACAGATGATGATGTTTGCAGTTTGGAGTGTAAACAGACTCTACTATGCAGGGTTGCCAACACCCAATTGGCAGTCAGTCACTCTCCTCCAAAACGATTACCTGCTAATGATGAGTGCTTTTATGTTAGAGATGCTGGTGGTCAGTCTGGAACTTCACTCTTAGCTGATGATCAGGCTGGATTGCTTAGAAGTAGACTTGATATTCATATCAAGGGAGACATAGGTCCAGGACCTATCTTGTCATTTGCTTCATGTAATCTTCCTCAAAAGCTTTTCCAAAATATAGAGGCTGCAGGTTATGAAATGCCCACACCTGTCCAAATGCAAGCAATTCCAGCTGCTTTGGGTGGCAAAAACTTGCTTGTCTCTGCCGACACAGGCTCTGGTAAAACTGCTTCCTTTCTGGTTCCAATTGTTTCTTGTTGCTCGCATTTTCGCTTTGAGCACTTGACGGACCAGAAAAAGCCGTTAGCTATGGTTCTAACTCCGACCAGAGAGCTCTGTATACAAGTTGAGGAACAAGCTAAGTTGCTTGGAAAGGGTTTGCCTTTTAAAACTGCACTTGTGGTTGGTGGCGACGCAATGCCCAGACAACTTTTCCGCATTCAGCAAGGAGTCGAGCTCATTGTGGGAACCCCGGGAAGACTAATTGATCTTTTAGCAAACCATGATATTGAACTGGAGGATATAAGGATTTTTGTTCTTGATGAGGTGGATTGCATGCTCCAAAGGGGCTTCCGGGATCAGGTGATGCAGATATTTAGGGCTCTATCACAACCCCAGGTTTTACTGTATTCTGCAACAATCTCCCCAGATATAGAGAAGATGGTCAGCTCTATGTCAAAAGATGTTGCTGTAATCTCTGTTGGCAAGCCTAACAGACCAAATAAGGCTGTGAAGCAGCTGCCTATATGGGTTGAGTCGAAGCAAAAGAAGCAAAAGCTTTTCGACATATTGATGAGTAAGCAGCATTTTATGCCACCTGTTGTGGTTTATGTGGCATCAAGACTTGGGGCGGATCTGTTATCTAATGCGATTACAGTCACCACTGGTGTGAAAGCTTTATCAATCCATGGGGAGAAATCCATGAAGGAGAGGAGGGATATCATGAAGTCATTTTTAATGGGTGATGTTCCTGTTATTGTAGCCACCGGTGTTTTAGGCCGTGGGCTAGATCTCTTGGGTGTAAGACAGGTTATTGTTTTTGACATGCCCAATTCCATTAGTGAGTATGTCCACCAGATTGGTAGGGCATCTAGATTAGGAGAAGAGGGTACAGCAATTGTGTTTGTATGTCAGGAGAATAAGAACTTGTTTCCAGAATTGGTTGAAATTTTAAGATCTTCTGGTGCAGCTATACCTAGGGAGCTTGTTAGATCACGGTATACGGCATGCCCATACTCCATTGGCCGAGGCCAGAAGAAAAGAAAGCATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C zf-HIT

Protein Analysis

605

Amino Acids

66.82

Weight (kDa)

8.65

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HIT	PF04438	110 - 137	3.5e-07	HIT zinc finger
DEAD	PF00270	230 - 401	1e-42	DEAD/DEAH box helicase
Helicase_C	PF00271	437 - 548	4.9e-21	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02065 AT3G02065 AT3G02065
fragaria_vesca	FvH4_6g35850 FvH4_6g35850
malus_domestica	MD17G1003800.v1.1
pyrus_communis	pycom17g00050
rosa_chinensis	RchiOBHm_Chr2g0147891
rosa_laevigata	RLG00000020290
rosa_multiflora	Rmu_sc0000308.1_g000058
rosa_roxburghii	Rroxscaffold_2G00099220
rosa_rugosa	Rorug02G0402700 Rorug02G0402800
rosa_samantha	Rh2AG459700 Rh2BG473000 Rh2CG447000 Rh2DG481900
rosa_wichuraiana	Rw2G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	487, 662
AccI	GTMKAC	3 cut(s)	571, 883, 1763
AciI	CCGC	4 cut(s)	37, 101, 979, 1394
AclWI	GGATC	3 cut(s)	290, 1128, 1404
AcoI	YGGCCR	2 cut(s)	238, 1786
AcsI	RAATTY	1 cut(s)	1710
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	2 cut(s)	230, 1654
AfiI	CCNNNNNNNGG	3 cut(s)	77, 323, 1123
AgeI	ACCGGT	1 cut(s)	1529
AgsI	TTSAA	3 cut(s)	142, 1055, 1709
AjnI	CCWGG	4 cut(s)	71, 322, 604, 1158
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AleI	CACNNNNGTG	1 cut(s)	1430
Alw21I	GWGCWC	4 cut(s)	44, 825, 879, 1002
Alw26I	GTCTC	3 cut(s)	296, 588, 748
AlwI	GGATC	3 cut(s)	290, 1128, 1404
AlwNI	CAGNNNCTG	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	1015
AoxI	GGCC	4 cut(s)	238, 1540, 1786, 1792
ApeKI	GCWGC	7 cut(s)	348, 668, 716, 1279, 1282, 1345, 1730
ApoI	RAATTY	1 cut(s)	1710
AsiGI	ACCGGT	1 cut(s)	1529
Asp700I	GAANNNNTTC	1 cut(s)	318
AspA2I	CCTAGG	1 cut(s)	1739
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	3 cut(s)	602, 608, 832
AsuC2I	CCSGG	3 cut(s)	1016, 1017, 1118
AsuHPI	GGTGA	5 cut(s)	119, 371, 1138, 1414, 1517
AvaI	CYCGRG	1 cut(s)	1015
AvaII	GGWCC	3 cut(s)	602, 608, 832
AvrII	CCTAGG	1 cut(s)	1739
BalI	TGGCCA	1 cut(s)	240
BanII	GRGCYC	4 cut(s)	44, 879, 1002, 1147
BarI	GAAGNNNNNNTAC	2 cut(s)	757, 789
BauI	CACGAG	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	1027
Bbv12I	GWGCWC	4 cut(s)	44, 825, 879, 1002
BbvI	GCAGC	7 cut(s)	360, 655, 703, 1269, 1291, 1357, 1742
BccI	CCATC	6 cut(s)	58, 81, 132, 230, 253, 1198
BceAI	ACGGC	4 cut(s)	336, 829, 1527, 1782
BciT130I	CCWGG	4 cut(s)	73, 324, 606, 1160
BclI	TGATCA	2 cut(s)	373, 547
BcnI	CCSGG	3 cut(s)	1016, 1017, 1118
BcoDI	GTCTC	3 cut(s)	296, 588, 748
BfaI	CTAG	3 cut(s)	1550, 1635, 1740
BfmI	CTRYAG	1 cut(s)	669
BfuAI	ACCTGC	2 cut(s)	487, 662
BglII	AGATCT	2 cut(s)	1552, 1718
BisI	GCNGC	8 cut(s)	101, 349, 669, 717, 1280, 1283, 1346, 1731
BlnI	CCTAGG	1 cut(s)	1739
BlsI	GCNGC	8 cut(s)	102, 350, 670, 718, 1281, 1284, 1347, 1732
Bme1390I	CCNGG	7 cut(s)	73, 324, 606, 1016, 1017, 1118, 1160
Bme18I	GGWCC	3 cut(s)	602, 608, 832
BmeT110I	CYCGRG	1 cut(s)	1015
BmgT120I	GGNCC	3 cut(s)	602, 608, 832
BmiI	GGNNCC	2 cut(s)	786, 1012
BmrFI	CCNGG	7 cut(s)	73, 324, 606, 1016, 1017, 1118, 1160
BmsI	GCATC	4 cut(s)	499, 1119, 1388, 1640
BoxI	GACNNNNGTC	1 cut(s)	600
BpiI	GAAGAC	1 cut(s)	1027
BplI	GAGNNNNNCTC	2 cut(s)	984, 1016
BpmI	CTGGAG	1 cut(s)	1079
BpuMI	CCSGG	3 cut(s)	1016, 1017, 1118
BsaBI	GATNNNNATC	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	9 cut(s)	71, 72, 1014, 1015, 1158, 1450, 1543, 1739, 1789
BsaWI	WCCGGW	1 cut(s)	1529
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 323, 1123
Bse118I	RCCGGY	2 cut(s)	111, 1529
Bse1I	ACTGG	2 cut(s)	1062, 1432
Bse3DI	GCAATG	1 cut(s)	966
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	4 cut(s)	73, 324, 606, 1160
BseDI	CCNNGG	9 cut(s)	71, 72, 1014, 1015, 1158, 1450, 1543, 1739, 1789
BseGI	GGATG	1 cut(s)	92
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	3 cut(s)	77, 323, 1123
BseMI	GCAATG	1 cut(s)	966
BseNI	ACTGG	2 cut(s)	1062, 1432
BseRI	GAGGAG	3 cut(s)	15, 453, 1489
BseXI	GCAGC	7 cut(s)	360, 655, 703, 1269, 1291, 1357, 1742
BsgI	GTGCAG	2 cut(s)	921, 1749
BshFI	GGCC	4 cut(s)	240, 1542, 1788, 1794
BshTI	ACCGGT	1 cut(s)	1529
BsiHKAI	GWGCWC	4 cut(s)	44, 825, 879, 1002
BsiHKCI	CYCGRG	1 cut(s)	1015
BsiSI	CCGG	4 cut(s)	112, 1016, 1117, 1530
BslI	CCNNNNNNNGG	3 cut(s)	77, 323, 1123
BsmAI	GTCTC	3 cut(s)	296, 588, 748
BsmI	GAATGC	1 cut(s)	981
BsnI	GGCC	4 cut(s)	240, 1542, 1788, 1794
Bso31I	GGTCTC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	1015
Bsp1286I	GDGCHC	5 cut(s)	44, 825, 879, 1002, 1147
Bsp143I	GATC	9 cut(s)	295, 373, 547, 1030, 1120, 1396, 1552, 1718, 1754
Bsp19I	CCATGG	1 cut(s)	1450
BspACI	CCGC	4 cut(s)	37, 101, 979, 1394
BspANI	GGCC	4 cut(s)	240, 1542, 1788, 1794
BspHI	TCATGA	1 cut(s)	1485
BspLI	GGNNCC	2 cut(s)	786, 1012
BspMAI	CTGCAG	1 cut(s)	673
BspMI	ACCTGC	2 cut(s)	487, 662
BspPI	GGATC	3 cut(s)	290, 1128, 1404
BspTNI	GGTCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	966
BsrFI	RCCGGY	2 cut(s)	111, 1529
BsrI	ACTGG	2 cut(s)	1062, 1432
BssAI	RCCGGY	2 cut(s)	111, 1529
BssECI	CCNNGG	9 cut(s)	71, 72, 1014, 1015, 1158, 1450, 1543, 1739, 1789
BssMI	GATC	9 cut(s)	295, 373, 547, 1030, 1120, 1396, 1552, 1718, 1754
BssNAI	GTATAC	2 cut(s)	884, 1764
BssNI	GRCGYC	1 cut(s)	98
BssSI	CACGAG	1 cut(s)	224
BssT1I	CCWWGG	2 cut(s)	1450, 1739
Bst1107I	GTATAC	2 cut(s)	884, 1764
Bst2BI	CACGAG	1 cut(s)	224
Bst2UI	CCWGG	4 cut(s)	73, 324, 606, 1160
Bst4CI	ACNGT	3 cut(s)	1170, 1420, 1761
Bst6I	CTCTTC	2 cut(s)	324, 1641
BstACI	GRCGYC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	1354
BstC8I	GCNNGC	6 cut(s)	93, 705, 806, 1100, 1250, 1771
BstDEI	CTNAG	4 cut(s)	159, 538, 563, 903
BstDSI	CCRYGG	2 cut(s)	1450, 1543
BstEII	GGTNACC	1 cut(s)	107
BstENI	CCTNNNNNAGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	9 cut(s)	298, 376, 550, 1033, 1123, 1399, 1555, 1721, 1757
BstMAI	GTCTC	3 cut(s)	296, 588, 748
BstMBI	GATC	9 cut(s)	295, 373, 547, 1030, 1120, 1396, 1552, 1718, 1754
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 713, 1312, 1354
BstNI	CCWGG	4 cut(s)	73, 324, 606, 1160
BstNSI	RCATGY	4 cut(s)	270, 1102, 1591, 1773
BstPAI	GACNNNNGTC	1 cut(s)	600
BstPI	GGTNACC	1 cut(s)	107
BstSCI	CCNGG	7 cut(s)	71, 322, 604, 1014, 1015, 1116, 1158
BstSFI	CTRYAG	1 cut(s)	669
BstV1I	GCAGC	7 cut(s)	360, 655, 703, 1269, 1291, 1357, 1742
BstV2I	GAAGAC	1 cut(s)	1027
BstX2I	RGATCY	4 cut(s)	295, 1396, 1552, 1718
BstXI	CCANNNNNNTGG	1 cut(s)	1622
BstYI	RGATCY	4 cut(s)	295, 1396, 1552, 1718
BstZ17I	GTATAC	2 cut(s)	884, 1764
BsuRI	GGCC	4 cut(s)	240, 1542, 1788, 1794
BtgI	CCRYGG	2 cut(s)	1450, 1543
BtsCI	GGATG	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	3 cut(s)	261, 277, 1425
BveI	ACCTGC	2 cut(s)	487, 662
Cac8I	GCNNGC	6 cut(s)	93, 705, 806, 1100, 1250, 1771
CaiI	CAGNNNCTG	1 cut(s)	761
CciI	TCATGA	1 cut(s)	1485
CfoI	GCGC	1 cut(s)	190
Cfr10I	RCCGGY	2 cut(s)	111, 1529
Cfr13I	GGNCC	3 cut(s)	602, 608, 832
Cfr9I	CCCGGG	1 cut(s)	1015
CseI	GACGC	2 cut(s)	106, 965
Csp6I	GTAC	2 cut(s)	229, 1653
CspAI	ACCGGT	1 cut(s)	1529
CviQI	GTAC	2 cut(s)	229, 1653
DdeI	CTNAG	4 cut(s)	159, 538, 563, 903
DpnI	GATC	9 cut(s)	297, 375, 549, 1032, 1122, 1398, 1554, 1720, 1756
DpnII	GATC	9 cut(s)	295, 373, 547, 1030, 1120, 1396, 1552, 1718, 1754
DraI	TTTAAA	1 cut(s)	931
EaeI	YGGCCR	2 cut(s)	238, 1786
Eam1104I	CTCTTC	2 cut(s)	324, 1641
EarI	CTCTTC	2 cut(s)	324, 1641
EciI	GGCGGA	1 cut(s)	1409
Ecl136II	GAGCTC	3 cut(s)	42, 877, 1000
Eco130I	CCWWGG	2 cut(s)	1450, 1739
Eco24I	GRGCYC	4 cut(s)	44, 879, 1002, 1147
Eco31I	GGTCTC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	1483
Eco47I	GGWCC	3 cut(s)	602, 608, 832
Eco53kI	GAGCTC	3 cut(s)	42, 877, 1000
Eco88I	CYCGRG	1 cut(s)	1015
Eco91I	GGTNACC	1 cut(s)	107
EcoICRI	GAGCTC	3 cut(s)	42, 877, 1000
EcoNI	CCTNNNNNAGG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	608
EcoO65I	GGTNACC	1 cut(s)	107
EcoRII	CCWGG	4 cut(s)	71, 322, 604, 1158
EcoRV	GATATC	1 cut(s)	1483
EcoT14I	CCWWGG	2 cut(s)	1450, 1739
EcoT38I	GRGCYC	4 cut(s)	44, 879, 1002, 1147
ErhI	CCWWGG	2 cut(s)	1450, 1739
FbaI	TGATCA	2 cut(s)	373, 547
FblI	GTMKAC	3 cut(s)	571, 883, 1763
Fnu4HI	GCNGC	8 cut(s)	101, 349, 669, 717, 1280, 1283, 1346, 1731
FokI	GGATG	1 cut(s)	99
FriOI	GRGCYC	4 cut(s)	44, 879, 1002, 1147
Fsp4HI	GCNGC	8 cut(s)	101, 349, 669, 717, 1280, 1283, 1346, 1731
FspBI	CTAG	3 cut(s)	1550, 1635, 1740
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	8 cut(s)	101, 349, 669, 717, 1280, 1283, 1346, 1731
GsuI	CTGGAG	1 cut(s)	1079
HaeIII	GGCC	4 cut(s)	240, 1542, 1788, 1794
HapII	CCGG	4 cut(s)	112, 1016, 1117, 1530
HgaI	GACGC	2 cut(s)	106, 965
HhaI	GCGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	98
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	3 cut(s)	647, 1319, 1437
HinfI	GANTC	5 cut(s)	119, 163, 415, 993, 1298
HpaII	CCGG	4 cut(s)	112, 1016, 1117, 1530
HphI	GGTGA	5 cut(s)	119, 371, 1138, 1414, 1517
Hpy166II	GTNNAC	6 cut(s)	19, 410, 572, 884, 1615, 1764
Hpy188I	TCNGA	3 cut(s)	168, 378, 867
Hpy188III	TCNNGA	8 cut(s)	299, 525, 1082, 1383, 1486, 1635, 1676, 1697
Hpy8I	GTNNAC	6 cut(s)	19, 410, 572, 884, 1615, 1764
Hpy99I	CGWCG	2 cut(s)	100, 959
HpyAV	CCTTC	2 cut(s)	71, 1462
HpyCH4III	ACNGT	3 cut(s)	1170, 1420, 1761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 713, 1312, 1354
HpyF3I	CTNAG	4 cut(s)	159, 538, 563, 903
Hsp92I	GRCGYC	1 cut(s)	98
HspAI	GCGC	1 cut(s)	188
Ksp22I	TGATCA	2 cut(s)	373, 547
Kzo9I	GATC	9 cut(s)	295, 373, 547, 1030, 1120, 1396, 1552, 1718, 1754
LmnI	GCTCC	4 cut(s)	39, 47, 1107, 1744
Lsp1109I	GCAGC	7 cut(s)	360, 655, 703, 1269, 1291, 1357, 1742
LweI	GCATC	4 cut(s)	499, 1119, 1388, 1640
MaeI	CTAG	3 cut(s)	1550, 1635, 1740
MaeIII	GTNAC	3 cut(s)	107, 455, 1420
MalI	GATC	9 cut(s)	297, 375, 549, 1032, 1122, 1398, 1554, 1720, 1756
MboI	GATC	9 cut(s)	295, 373, 547, 1030, 1120, 1396, 1552, 1718, 1754
MboII	GAAGA	7 cut(s)	311, 629, 1032, 1213, 1658, 1713, 1810
MfeI	CAATTG	3 cut(s)	443, 789, 1659
MflI	RGATCY	4 cut(s)	295, 1396, 1552, 1718
MhlI	GDGCHC	5 cut(s)	44, 825, 879, 1002, 1147
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	9 cut(s)	196, 443, 708, 789, 1026, 1594, 1659, 1700, 1710
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	3 cut(s)	409, 1002, 1307
MmeI	TCCRAC	1 cut(s)	890
Mox20I	TGGCCA	1 cut(s)	240
MroXI	GAANNNNTTC	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	6 cut(s)	132, 150, 287, 930, 1499, 1715
MslI	CAYNNNNRTG	2 cut(s)	1334, 1430
Msp20I	TGGCCA	1 cut(s)	240
MspA1I	CMGCKG	2 cut(s)	716, 1282
MspI	CCGG	4 cut(s)	112, 1016, 1117, 1530
MspR9I	CCNGG	7 cut(s)	73, 324, 606, 1016, 1017, 1118, 1160
MunI	CAATTG	3 cut(s)	443, 789, 1659
Mva1269I	GAATGC	1 cut(s)	981
MvaI	CCWGG	4 cut(s)	73, 324, 606, 1160
MwoI	GCNNNNNNNGC	4 cut(s)	97, 713, 1312, 1354
NciI	CCSGG	3 cut(s)	1016, 1017, 1118
NcoI	CCATGG	1 cut(s)	1450
NdeII	GATC	9 cut(s)	295, 373, 547, 1030, 1120, 1396, 1552, 1718, 1754
NlaIV	GGNNCC	2 cut(s)	786, 1012
NmeAIII	GCCGAG	1 cut(s)	1814
NmuCI	GTSAC	3 cut(s)	107, 455, 1420
NspI	RCATGY	4 cut(s)	270, 1102, 1591, 1773
OliI	CACNNNNGTG	1 cut(s)	1430
PaeI	GCATGC	2 cut(s)	1102, 1773
PagI	TCATGA	1 cut(s)	1485
PasI	CCCWGGG	1 cut(s)	72
PctI	GAATGC	1 cut(s)	981
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	119, 163
PfoI	TCCNGGA	3 cut(s)	322, 604, 1116
PinAI	ACCGGT	1 cut(s)	1529
PkrI	GCNGC	8 cut(s)	102, 350, 670, 718, 1281, 1284, 1347, 1732
PleI	GAGTC	3 cut(s)	409, 1001, 1306
PpsI	GAGTC	3 cut(s)	409, 1001, 1306
PpuMI	RGGWCCY	1 cut(s)	608
PshAI	GACNNNNGTC	1 cut(s)	600
Psp124BI	GAGCTC	3 cut(s)	44, 879, 1002
Psp5II	RGGWCCY	1 cut(s)	608
Psp6I	CCWGG	4 cut(s)	71, 322, 604, 1158
PspEI	GGTNACC	1 cut(s)	107
PspGI	CCWGG	4 cut(s)	71, 322, 604, 1158
PspN4I	GGNNCC	2 cut(s)	786, 1012
PspPI	GGNCC	3 cut(s)	602, 608, 832
PspPPI	RGGWCCY	1 cut(s)	608
PstI	CTGCAG	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	4 cut(s)	295, 1396, 1552, 1718
PvuII	CAGCTG	2 cut(s)	716, 1282
RsaI	GTAC	2 cut(s)	230, 1654
RsaNI	GTAC	2 cut(s)	229, 1653
RseI	CAYNNNNRTG	2 cut(s)	1334, 1430
SacI	GAGCTC	3 cut(s)	44, 879, 1002
SaqAI	TTAA	6 cut(s)	132, 150, 287, 930, 1499, 1715
SatI	GCNGC	8 cut(s)	101, 349, 669, 717, 1280, 1283, 1346, 1731
Sau3AI	GATC	9 cut(s)	295, 373, 547, 1030, 1120, 1396, 1552, 1718, 1754
Sau96I	GGNCC	3 cut(s)	602, 608, 832
SchI	GAGTC	3 cut(s)	409, 1002, 1307
ScrFI	CCNGG	7 cut(s)	73, 324, 606, 1016, 1017, 1118, 1160
SduI	GDGCHC	5 cut(s)	44, 825, 879, 1002, 1147
SfaNI	GCATC	4 cut(s)	499, 1119, 1388, 1640
SfcI	CTRYAG	1 cut(s)	669
SgrAI	CRCCGGYG	1 cut(s)	1529
SinI	GGWCC	3 cut(s)	602, 608, 832
SmaI	CCCGGG	1 cut(s)	1017
SmiMI	CAYNNNNRTG	2 cut(s)	1334, 1430
SphI	GCATGC	2 cut(s)	1102, 1773
Sse9I	AATT	9 cut(s)	196, 443, 708, 789, 1026, 1594, 1659, 1700, 1710
SsiI	CCGC	4 cut(s)	37, 101, 979, 1394
SspMI	CTAG	3 cut(s)	1550, 1635, 1740
SstI	GAGCTC	3 cut(s)	44, 879, 1002
StyD4I	CCNGG	7 cut(s)	71, 322, 604, 1014, 1015, 1116, 1158
StyI	CCWWGG	2 cut(s)	1450, 1739
TaaI	ACNGT	3 cut(s)	1170, 1420, 1761
TaqI	TCGA	3 cut(s)	996, 1301, 1326
TasI	AATT	9 cut(s)	196, 443, 708, 789, 1026, 1594, 1659, 1700, 1710
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	119, 163
Tru1I	TTAA	6 cut(s)	132, 150, 287, 930, 1499, 1715
Tru9I	TTAA	6 cut(s)	132, 150, 287, 930, 1499, 1715
TscAI	CASTG	3 cut(s)	261, 277, 1432
TseFI	GTSAC	3 cut(s)	107, 455, 1420
TseI	GCWGC	7 cut(s)	348, 668, 716, 1279, 1282, 1345, 1730
Tsp45I	GTSAC	3 cut(s)	107, 455, 1420
TspDTI	ATGAA	7 cut(s)	17, 291, 572, 618, 693, 1481, 1502
TspGWI	ACGGA	1 cut(s)	845
TspMI	CCCGGG	1 cut(s)	1015
TspRI	CASTG	3 cut(s)	261, 277, 1432
VpaK11BI	GGWCC	3 cut(s)	602, 608, 832
XagI	CCTNNNNNAGG	1 cut(s)	321
XapI	RAATTY	1 cut(s)	1710
XbaI	TCTAGA	1 cut(s)	1634
XceI	RCATGY	4 cut(s)	270, 1102, 1591, 1773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmaI	CCCGGG	1 cut(s)	1015
XmaJI	CCTAGG	1 cut(s)	1739
XmiI	GTMKAC	3 cut(s)	571, 883, 1763
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	3 cut(s)	1550, 1635, 1740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.