AT3G02300

regulator of chromosome condensation (RCC1) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011361
Physical Location & Seq
Forward (+)
461072 .. 464223
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02300.2

Sequence Viewer

Length: 1416 bp
ATGGATATTGGAGAAATCATTGGTGAAGTAGCTCCTTCTGTGAGTATCCCAACGAAGAGTGCTATATACGTTTGGGGTTACAATCAAAGCGGACAAACTGGTAGGAATGAACAAGAGAAGCTTTTGCGTATCCCAAAACAGCTTCCTCCTGAGCTTTTTGGTTGCCCCGCTGGTGCCAATTCGCGTTGGCTCGATATTTCTTGTGGTCGGGAACATACAGCTGCGGTTGCATCAGATGGTTCTCTCTTTGCTTGGGGTGCTAATGAATATGGTCAGCTTGGGGATGGAACCGAGGTTGGGAGGAAACATCCAAAGAAGGTGAAACAGCTGCAATCAGAATTTGTGAAATTTGTGTCTTGTGGAGCTTTTTGCACTGCAGCTATCGCAGAACCCCGTGAAAATGACGGTACTCTTTCCACTAGTAGACTCTGGGTTTGGGGCCAAAATCAGGGATCAAATCTACCACGCTTGTTTTCGGGGGCATTTCCTGCTACAACGGCAATCCGCCAAGTATCATGTGGGACAGCTCATGTTGTGGCCTTATCAGAGGAAGGCCTTCTTCAAGCTTGGGGCTATAATGAACAAGGCCAACTTGGTAGAGGAGTCACTTGTGAAGGACTACAAGCACCTCGTGTGATAAATGCTTATGCGAAGTTCCTTGATGAAGCACCCGAGCTTGTGAAGATTATGCAACTTTCATGTGGAGAATACCATACTGCTGCTCTTTCTGATGCAGGCGAGGTTTACACTTGGGGATTAGGAAGCATGGGTCAACTTGGGCATGTTTCTCTTCAATCCGGGGATAAGGAGTTAATACCAAGGAGAGTCGTTGGTCTCGATGGTGTGTCCATGAAAGAAGTTGCTTGTGGTGGTGTACACACTTGTGCTTTATCTTTGGAAGGAGCACTTTATGCTTGGGGTGGTGGCCAAGCAGGACAGCTAGGACTTGGTCCTCAATCTGGTTTCTTTTTTAGTGTCTCTAATGGAAGCGAAATGCTTCTACGAAATGTCCCGGTTTTAGTCATCCCAACTGATGTCAGGCTTGTTGCGTGTGGACATTCTCACACTCTCGTTTATATGAGAGAGGGACGAATTTGTGGATGGGGTTATAATAGTTATGGTCAAGCAGCAAATGAGAAATCGTCATATGCTTGGTACCCATCGCCTGTAGACTGGTGTGTAGGACAAGTGAGGAAGCTAGCAGCAGGAGGTGGTCATTCAGCTGTTTTAACCGATGCATTTTCGTTGAAGGAGTTGTGTGAATTTCAATTAGCAGATAGTGTGAACCTCTCAAATGCTTCAGAGATTCAAGATGTTGCATTCAGAATGGGATCCGAAGCTTTAGCCCGCCTCTGCGAAAGACTGAGGGAGCAGTTACTTGATGGGGACTTTACTAATGGGGAAGAAGTATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1

Protein Analysis

471

Amino Acids

50.54

Weight (kDa)

5.33

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 27 - 165 8.5e-26 RCC1-like domain
RCC1 PF00415 33 - 87 6.4e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 76 - 103 1.3e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 90 - 139 2.4e-14 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 177 - 423 3.3e-53 RCC1-like domain
RCC1_2 PF13540 179 - 208 2.5e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 196 - 253 4.8e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 242 - 269 4.8e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 257 - 308 2.4e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 296 - 324 7.5e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 311 - 369 1.5e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 357 - 386 5.5e-07 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02300 AT3G02300
fragaria_vesca FvH4_6g46400 FvH4_6g46400
malus_domestica MD09G1074200.v1.1 MD17G1065600.v1.1
prunus_persica Prupe.3G249200_v2.0.a1 Prupe.3G249200_v2.0.a1
pyrus_communis pycom09g00130 pycom17g06550
rosa_chinensis RchiOBHm_Chr2g0164931
rosa_laevigata RLG00000021498
rosa_multiflora Rmu_sc0001097.1_g000002
rosa_roxburghii Rroxscaffold_2G00086200
rosa_rugosa Rorug02G0511300
rosa_samantha Rh2AG579600 Rh2BG590600 Rh2CG561300 Rh2DG601000
rosa_wichuraiana Rw2G048110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1110
Acc65I GGTACC 1 cut(s) 1155
AccB1I GGYRCC 2 cut(s) 173, 1155
AccI GTMKAC 2 cut(s) 424, 1170
AccII CGCG 1 cut(s) 184
AciI CCGC 5 cut(s) 90, 168, 224, 505, 1348
AclWI GGATC 3 cut(s) 460, 1326, 1339
AcoI YGGCCR 1 cut(s) 925
AcsI RAATTY 4 cut(s) 338, 347, 1092, 1262
AcuI CTGAAG 1 cut(s) 1284
AdeI CACNNNGTG 1 cut(s) 632
AfaI GTAC 3 cut(s) 409, 876, 1157
AfiI CCNNNNNNNGG 3 cut(s) 297, 448, 959
AgsI TTSAA 5 cut(s) 563, 794, 1249, 1268, 1310
AhlI ACTAGT 1 cut(s) 419
AleI CACNNNNGTG 1 cut(s) 882
Alw21I GWGCWC 1 cut(s) 907
Alw26I GTCTC 2 cut(s) 839, 982
AlwI GGATC 3 cut(s) 460, 1326, 1339
Ama87I CYCGRG 1 cut(s) 671
AoxI GGCC 5 cut(s) 439, 537, 553, 586, 925
ApeKI GCWGC 6 cut(s) 221, 328, 377, 719, 1127, 1202
ApoI RAATTY 4 cut(s) 338, 347, 1092, 1262
ArsI GACNNNNNNTTYG 2 cut(s) 417, 449
Asp700I GAANNNNTTC 2 cut(s) 555, 996
Asp718I GGTACC 1 cut(s) 1155
AspS9I GGNCC 2 cut(s) 439, 950
AsuC2I CCSGG 2 cut(s) 799, 1013
AsuHPI GGTGA 2 cut(s) 35, 331
AsuNHI GCTAGC 1 cut(s) 1198
AvaI CYCGRG 1 cut(s) 671
AvaII GGWCC 1 cut(s) 950
BalI TGGCCA 1 cut(s) 927
BamHI GGATCC 1 cut(s) 1331
BanI GGYRCC 2 cut(s) 173, 1155
BauI CACGAG 1 cut(s) 630
Bbv12I GWGCWC 1 cut(s) 907
BbvI GCAGC 6 cut(s) 208, 315, 389, 706, 1139, 1214
BccI CCATC 6 cut(s) 230, 278, 833, 1095, 1168, 1376
BceAI ACGGC 1 cut(s) 513
BciVI GTATCC 2 cut(s) 56, 140
BcnI CCSGG 2 cut(s) 799, 1013
BcoDI GTCTC 2 cut(s) 839, 982
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 3 cut(s) 420, 941, 1199
BfmI CTRYAG 2 cut(s) 375, 1167
BfuI GTATCC 2 cut(s) 56, 140
BisI GCNGC 6 cut(s) 222, 329, 378, 720, 1128, 1203
BlsI GCNGC 6 cut(s) 223, 330, 379, 721, 1129, 1204
Bme1390I CCNGG 2 cut(s) 799, 1013
Bme18I GGWCC 1 cut(s) 950
BmeT110I CYCGRG 1 cut(s) 671
BmgT120I GGNCC 2 cut(s) 439, 950
BmiI GGNNCC 5 cut(s) 175, 289, 440, 1157, 1333
BmrFI CCNGG 2 cut(s) 799, 1013
BmsI GCATC 3 cut(s) 239, 721, 1225
BmtI GCTAGC 1 cut(s) 1202
Bpu10I CCTNAGC 1 cut(s) 150
BpuMI CCSGG 2 cut(s) 799, 1013
BsaI GGTCTC 1 cut(s) 839
BsaJI CCNNGG 3 cut(s) 291, 798, 818
Bsc4I CCNNNNNNNGG 3 cut(s) 297, 448, 959
Bse1I ACTGG 2 cut(s) 103, 1178
BseDI CCNNGG 3 cut(s) 291, 798, 818
BseGI GGATG 4 cut(s) 289, 307, 1023, 1106
BseLI CCNNNNNNNGG 3 cut(s) 297, 448, 959
BseMII CTCAG 2 cut(s) 141, 1355
BseNI ACTGG 2 cut(s) 103, 1178
BseRI GAGGAG 1 cut(s) 615
BseXI GCAGC 6 cut(s) 208, 315, 389, 706, 1139, 1214
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 5 cut(s) 441, 539, 555, 588, 927
BshNI GGYRCC 2 cut(s) 173, 1155
BsiHKAI GWGCWC 1 cut(s) 907
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 2 cut(s) 798, 1013
BslFI GGGAC 4 cut(s) 535, 995, 1101, 1400
BslI CCNNNNNNNGG 3 cut(s) 297, 448, 959
BsmAI GTCTC 2 cut(s) 839, 982
BsmFI GGGAC 4 cut(s) 535, 995, 1101, 1400
BsmI GAATGC 1 cut(s) 1319
BsnI GGCC 5 cut(s) 441, 539, 555, 588, 927
Bso31I GGTCTC 1 cut(s) 839
BsoBI CYCGRG 1 cut(s) 671
Bsp1286I GDGCHC 1 cut(s) 907
Bsp1407I TGTACA 1 cut(s) 874
Bsp143I GATC 2 cut(s) 452, 1331
BspACI CCGC 5 cut(s) 90, 168, 224, 505, 1348
BspANI GGCC 5 cut(s) 441, 539, 555, 588, 927
BspCNI CTCAG 2 cut(s) 142, 1356
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 5 cut(s) 175, 289, 440, 1157, 1333
BspMAI CTGCAG 1 cut(s) 379
BspOI GCTAGC 1 cut(s) 1202
BspPI GGATC 3 cut(s) 460, 1326, 1339
BspT107I GGYRCC 2 cut(s) 173, 1155
BspTNI GGTCTC 1 cut(s) 839
BsrGI TGTACA 1 cut(s) 874
BsrI ACTGG 2 cut(s) 103, 1178
BssECI CCNNGG 3 cut(s) 291, 798, 818
BssMI GATC 2 cut(s) 452, 1331
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 1 cut(s) 818
Bst2BI CACGAG 1 cut(s) 630
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 2 cut(s) 50, 795
BstAPI GCANNNNNTGC 2 cut(s) 488, 911
BstAUI TGTACA 1 cut(s) 874
BstC8I GCNNGC 3 cut(s) 736, 1200, 1348
BstDEI CTNAG 2 cut(s) 150, 1364
BstF5I GGATG 4 cut(s) 289, 307, 1023, 1106
BstFNI CGCG 1 cut(s) 184
BstKTI GATC 2 cut(s) 455, 1334
BstMAI GTCTC 2 cut(s) 839, 982
BstMBI GATC 2 cut(s) 452, 1331
BstMWI GCNNNNNNNGC 6 cut(s) 227, 257, 383, 488, 497, 911
BstNSI RCATGY 1 cut(s) 785
BstSCI CCNGG 2 cut(s) 797, 1011
BstSFI CTRYAG 2 cut(s) 375, 1167
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 6 cut(s) 208, 315, 389, 706, 1139, 1214
BstX2I RGATCY 1 cut(s) 1331
BstYI RGATCY 1 cut(s) 1331
BsuI GTATCC 2 cut(s) 56, 140
BsuRI GGCC 5 cut(s) 441, 539, 555, 588, 927
BtgZI GCGATG 1 cut(s) 1146
BtsCI GGATG 4 cut(s) 289, 307, 1023, 1106
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 3 cut(s) 736, 1200, 1348
Cfr13I GGNCC 2 cut(s) 439, 950
Csp6I GTAC 3 cut(s) 408, 875, 1156
CviAII CATG 6 cut(s) 516, 530, 699, 766, 782, 850
CviQI GTAC 3 cut(s) 408, 875, 1156
DdeI CTNAG 2 cut(s) 150, 1364
DpnI GATC 2 cut(s) 454, 1333
DpnII GATC 2 cut(s) 452, 1331
DraIII CACNNNGTG 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 925
Eam1104I CTCTTC 2 cut(s) 50, 795
EarI CTCTTC 2 cut(s) 50, 795
EciI GGCGGA 1 cut(s) 494
Eco130I CCWWGG 1 cut(s) 818
Eco147I AGGCCT 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 839
Eco47I GGWCC 1 cut(s) 950
Eco57I CTGAAG 1 cut(s) 1284
Eco88I CYCGRG 1 cut(s) 671
EcoT14I CCWWGG 1 cut(s) 818
EcoT22I ATGCAT 1 cut(s) 1240
ErhI CCWWGG 1 cut(s) 818
FaeI CATG 6 cut(s) 519, 533, 702, 769, 785, 853
FalI AAGNNNNNCTT 8 cut(s) 105, 137, 543, 575, 576, 608, 891, 923
FaqI GGGAC 4 cut(s) 535, 995, 1101, 1400
FatI CATG 6 cut(s) 515, 529, 698, 765, 781, 849
FauI CCCGC 2 cut(s) 175, 1355
FauNDI CATATG 1 cut(s) 1147
FblI GTMKAC 2 cut(s) 424, 1170
Fnu4HI GCNGC 6 cut(s) 222, 329, 378, 720, 1128, 1203
FokI GGATG 4 cut(s) 294, 296, 1010, 1113
Fsp4HI GCNGC 6 cut(s) 222, 329, 378, 720, 1128, 1203
FspBI CTAG 3 cut(s) 420, 941, 1199
GluI GCNGC 6 cut(s) 222, 329, 378, 720, 1128, 1203
HaeIII GGCC 5 cut(s) 441, 539, 555, 588, 927
HapII CCGG 2 cut(s) 798, 1013
Hin1II CATG 6 cut(s) 519, 533, 702, 769, 785, 853
HincII GTYRAC 1 cut(s) 773
HindII GTYRAC 1 cut(s) 773
HindIII AAGCTT 3 cut(s) 119, 564, 1338
HinfI GANTC 4 cut(s) 426, 603, 825, 1306
HpaII CCGG 2 cut(s) 798, 1013
HphI GGTGA 2 cut(s) 35, 331
Hpy166II GTNNAC 8 cut(s) 425, 745, 773, 875, 877, 1055, 1171, 1285
Hpy188I TCNGA 7 cut(s) 235, 337, 547, 730, 1303, 1325, 1336
Hpy188III TCNNGA 4 cut(s) 149, 209, 836, 1310
Hpy8I GTNNAC 8 cut(s) 425, 745, 773, 875, 877, 1055, 1171, 1285
HpyAV CCTTC 7 cut(s) 45, 310, 545, 566, 608, 893, 1243
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 8 cut(s) 230, 331, 372, 377, 691, 734, 1238, 1319
HpyF10VI GCNNNNNNNGC 6 cut(s) 227, 257, 383, 488, 497, 911
HpyF3I CTNAG 2 cut(s) 150, 1364
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 6 cut(s) 519, 533, 702, 769, 785, 853
KpnI GGTACC 1 cut(s) 1159
Kzo9I GATC 2 cut(s) 452, 1331
LmnI GCTCC 4 cut(s) 37, 362, 902, 1369
Lsp1109I GCAGC 6 cut(s) 208, 315, 389, 706, 1139, 1214
LweI GCATC 3 cut(s) 239, 721, 1225
MaeI CTAG 3 cut(s) 420, 941, 1199
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 3 cut(s) 77, 604, 1374
MalI GATC 2 cut(s) 454, 1333
MboI GATC 2 cut(s) 452, 1331
MboII GAAGA 5 cut(s) 67, 551, 694, 782, 1415
MflI RGATCY 1 cut(s) 1331
MhlI GDGCHC 1 cut(s) 907
MlsI TGGCCA 1 cut(s) 927
MluCI AATT 6 cut(s) 178, 338, 347, 1092, 1262, 1268
MluNI TGGCCA 1 cut(s) 927
MlyI GAGTC 3 cut(s) 420, 612, 834
Mox20I TGGCCA 1 cut(s) 927
Mph1103I ATGCAT 1 cut(s) 1240
MroXI GAANNNNTTC 2 cut(s) 555, 996
MscI TGGCCA 1 cut(s) 927
MseI TTAA 3 cut(s) 812, 1229, 1414
MslI CAYNNNNRTG 1 cut(s) 882
Msp20I TGGCCA 1 cut(s) 927
MspA1I CMGCKG 4 cut(s) 170, 221, 328, 1223
MspI CCGG 2 cut(s) 798, 1013
MspR9I CCNGG 2 cut(s) 799, 1013
Mva1269I GAATGC 1 cut(s) 1319
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 6 cut(s) 227, 257, 383, 488, 497, 911
NciI CCSGG 2 cut(s) 799, 1013
NdeI CATATG 1 cut(s) 1147
NdeII GATC 2 cut(s) 452, 1331
NheI GCTAGC 1 cut(s) 1198
NlaIII CATG 6 cut(s) 519, 533, 702, 769, 785, 853
NlaIV GGNNCC 5 cut(s) 175, 289, 440, 1157, 1333
NmuCI GTSAC 1 cut(s) 604
NsiI ATGCAT 1 cut(s) 1240
NspI RCATGY 1 cut(s) 785
OliI CACNNNNGTG 1 cut(s) 882
PceI AGGCCT 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 834
PctI GAATGC 1 cut(s) 1319
PdmI GAANNNNTTC 2 cut(s) 555, 996
PfeI GAWTC 1 cut(s) 1306
PflFI GACNNNGTC 1 cut(s) 948
PkrI GCNGC 6 cut(s) 223, 330, 379, 721, 1129, 1204
PleI GAGTC 3 cut(s) 420, 611, 833
PpsI GAGTC 3 cut(s) 420, 611, 833
PsiI TTATAA 1 cut(s) 1110
PspN4I GGNNCC 5 cut(s) 175, 289, 440, 1157, 1333
PspPI GGNCC 2 cut(s) 439, 950
PstI CTGCAG 1 cut(s) 379
PsuI RGATCY 1 cut(s) 1331
PsyI GACNNNGTC 1 cut(s) 948
PvuII CAGCTG 3 cut(s) 221, 328, 1223
RsaI GTAC 3 cut(s) 409, 876, 1157
RsaNI GTAC 3 cut(s) 408, 875, 1156
RseI CAYNNNNRTG 1 cut(s) 882
SaqAI TTAA 3 cut(s) 812, 1229, 1414
SatI GCNGC 6 cut(s) 222, 329, 378, 720, 1128, 1203
Sau3AI GATC 2 cut(s) 452, 1331
Sau96I GGNCC 2 cut(s) 439, 950
SchI GAGTC 3 cut(s) 420, 612, 834
ScrFI CCNGG 2 cut(s) 799, 1013
SduI GDGCHC 1 cut(s) 907
SfaNI GCATC 3 cut(s) 239, 721, 1225
SfcI CTRYAG 2 cut(s) 375, 1167
SinI GGWCC 1 cut(s) 950
SmiMI CAYNNNNRTG 1 cut(s) 882
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 6 cut(s) 178, 338, 347, 1092, 1262, 1268
SseBI AGGCCT 1 cut(s) 555
SsiI CCGC 5 cut(s) 90, 168, 224, 505, 1348
SspMI CTAG 3 cut(s) 420, 941, 1199
StuI AGGCCT 1 cut(s) 555
StyD4I CCNGG 2 cut(s) 797, 1011
StyI CCWWGG 1 cut(s) 818
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 1 cut(s) 72
TaqI TCGA 2 cut(s) 192, 837
TasI AATT 6 cut(s) 178, 338, 347, 1092, 1262, 1268
TatI WGTACW 1 cut(s) 874
TfiI GAWTC 1 cut(s) 1306
Tru1I TTAA 3 cut(s) 812, 1229, 1414
Tru9I TTAA 3 cut(s) 812, 1229, 1414
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 604
TseI GCWGC 6 cut(s) 221, 328, 377, 719, 1127, 1202
Tsp45I GTSAC 1 cut(s) 604
TspDTI ATGAA 6 cut(s) 123, 279, 594, 678, 687, 866
TspRI CASTG 1 cut(s) 379
Tth111I GACNNNGTC 1 cut(s) 948
VpaK11BI GGWCC 1 cut(s) 950
XapI RAATTY 4 cut(s) 338, 347, 1092, 1262
XceI RCATGY 1 cut(s) 785
XcmI CCANNNNNNNNNTGG 1 cut(s) 515
XmiI GTMKAC 2 cut(s) 424, 1170
XmnI GAANNNNTTC 2 cut(s) 555, 996
XspI CTAG 3 cut(s) 420, 941, 1199
Zsp2I ATGCAT 1 cut(s) 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.