pycom09g00130

Regulator of chromosome condensation (RCC1) repeat

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
103677 .. 107195
3519 bp
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UTR
Exon/CDS
Intron
pycom09g00130.1

Sequence Viewer

Length: 1416 bp
ATGAAAATGGACATTGATGAGCTTCTGGGTCGCAACCAGCCGGTGAACATTCCGACCAAGAGTGCGATATACGTGTGGGGATATAACCAGTCCGGGCAGACGGGTCGGAACGGGAAGGAGCAGCAGCTGAGGATCCCGAAGCAGCTCTCGCCGGAGCTTTTTGGGTGTACGGCGGGGGCTAATTCGCGGTGGCTGGACATTACTTGCGGCCGCGAGCACACCGCCGCTGTTACCTCAGACGGGTCGCTTTTCACTTGGGGAGCTAATGACTTTGGTCAATTGGGAGATGGAACGGAGGAGCGAAGAAAAAATCCGAAGAAAGTGAGGCAGTTACAGGCAGAGTTTGTGAAATCTGTGTCTTGTGGAGCACGTTGTACCGCTGCTATTGCAGAACCTCGTGAAAATGATGGAACCGTCTCAACAAGAAGGCTTTGGGTGTGGGGGCAGAATCAGGGATCGAATCTTCCACGTTTGTTTTGGGGAGCCTTTACTCCAAACACGATTATTCGTCAAGTGTCTTGTGGGGCAGTTCATGCGATGGCGTTATCAGAGGATGGCTTGCTACAAGCTTGGGGATATAATGAATACGGTCAGCTTGGCAGAGGATTTACATGTGAAGGATTACAGGGGGCTCGTATAATAAATGCATATGCGAAGTTCCTAGATGAAGCCCCTGAGCTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCACACAGCAGCTATATCTGAAAAAGGCGAGGTGTATACTTGGGGGCTAGGAAACATGGGTCAACTTGGGCATTGTTCCCTTCAATCTGGGGAGAAAGAGTTATTGCCTAGGAGAGTGGTCGCACTTGATGGAATAGTCGTAAAGGATGTTGCATGCGGTGGCGTACATACATGTGCTGTGACTCAGAAGGGAGCTCTTTATGCTTGGGGTGGTGGTCGTGCAGGGCAGTTAGGCCTTGGCCCTGAAACGGGATTATTTTCATGCAACCCTAATGAATCTCAGTCATTTTTCCGGAATATTCCTGCGTTGGTTATTCCAACTAGTGTGCAACTCATTGCGTGTGGACACTCCCACACACTTATCTCTACAAGGGATGGAAGAATTCATGGATGGGGCTACAATAGCTATGGTCAAGCATCTAATGAGAAACTAACTTACGCTTGGTATCCATCTCCAGTTGATTGGTGCGTTGGGGAAGTGCGAAAACTTGCAGCTGGTGGTGGCCATTCAGCCGTGTTGACTGATGCATGTACCTTGAAGGAATTGTGTGAATTTAGGCTTGCAGATAGTGTTAATCTAAAGAATGCTTCTACGATTGAGGACATTGCGTCTAGAACAGGTTCAGATGCTTTAGCACGGCTTTGTGAAAGATTGAGGCAGCATGTGTATGAGAGTGGCGACTGTGAATATGAAGACGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

51.21

Weight (kDa)

6.24

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 19 - 155 1.4e-27 RCC1-like domain
RCC1 PF00415 23 - 77 1.8e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 66 - 93 1.6e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 80 - 129 1.1e-14 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 143 - 410 4.4e-55 RCC1-like domain
RCC1_2 PF13540 169 - 198 5.7e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 185 - 243 2.9e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 230 - 259 6.5e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 246 - 298 1.1e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 285 - 314 1.1e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 301 - 358 1e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 348 - 376 1e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011361)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 749
AccII CGCG 2 cut(s) 187, 213
AccIII TCCGGA 1 cut(s) 1005
AciI CCGC 9 cut(s) 173, 187, 207, 211, 222, 225, 378, 705, 870
AclWI GGATC 3 cut(s) 127, 140, 463
AcoI YGGCCR 2 cut(s) 208, 1216
AcsI RAATTY 2 cut(s) 1095, 1265
AfaI GTAC 5 cut(s) 169, 376, 713, 879, 1246
AfiI CCNNNNNNNGG 3 cut(s) 240, 961, 962
AflIII ACRYGT 3 cut(s) 72, 611, 884
AgsI TTSAA 2 cut(s) 797, 1252
AhdI GACNNNNNGTC 1 cut(s) 1321
AhlI ACTAGT 1 cut(s) 1034
Alw21I GWGCWC 3 cut(s) 219, 370, 910
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 3 cut(s) 127, 140, 463
AlwNI CAGNNNCTG 1 cut(s) 127
Aor13HI TCCGGA 1 cut(s) 1005
AoxI GGCC 4 cut(s) 208, 946, 952, 1216
ApeKI GCWGC 7 cut(s) 121, 124, 142, 380, 722, 1205, 1372
ApoI RAATTY 2 cut(s) 1095, 1265
Asp700I GAANNNNTTC 1 cut(s) 1333
AspA2I CCTAGG 1 cut(s) 821
AspS9I GGNCC 1 cut(s) 953
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 55
AvrII CCTAGG 1 cut(s) 821
BalI TGGCCA 1 cut(s) 1218
BamHI GGATCC 1 cut(s) 132
BanII GRGCYC 2 cut(s) 634, 910
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 3 cut(s) 219, 370, 910
BbvCI CCTCAGC 1 cut(s) 128
BbvI GCAGC 7 cut(s) 133, 136, 154, 367, 734, 1217, 1384
BccI CCATC 8 cut(s) 281, 401, 532, 548, 836, 1082, 1098, 1171
BceAI ACGGC 3 cut(s) 186, 1211, 1367
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciVI GTATCC 1 cut(s) 1170
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 421
BcuI ACTAGT 1 cut(s) 1034
BfaI CTAG 5 cut(s) 662, 761, 822, 1035, 1326
BfuI GTATCC 1 cut(s) 1170
BlnI CCTAGG 1 cut(s) 821
Bme1390I CCNGG 1 cut(s) 94
BmeRI GACNNNNNGTC 1 cut(s) 1321
BmgT120I GGNCC 1 cut(s) 953
BmiI GGNNCC 3 cut(s) 134, 412, 484
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 3 cut(s) 1139, 1228, 1330
BoxI GACNNNNGTC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 1152
Bpu10I CCTNAGC 2 cut(s) 128, 675
BpuMI CCSGG 1 cut(s) 94
BsaAI YACGTR 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 821, 949
BsaWI WCCGGW 1 cut(s) 1005
BsaXI ACNNNNNCTCC 2 cut(s) 797, 827
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 961, 962
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 88, 1169
Bse3DI GCAATG 2 cut(s) 1047, 1317
BseAI TCCGGA 1 cut(s) 1005
BseDI CCNNGG 2 cut(s) 821, 949
BseGI GGATG 4 cut(s) 559, 865, 1093, 1109
BseLI CCNNNNNNNGG 3 cut(s) 240, 961, 962
BseMI GCAATG 2 cut(s) 1047, 1317
BseMII CTCAG 5 cut(s) 119, 249, 666, 911, 1007
BseNI ACTGG 2 cut(s) 88, 1169
BseRI GAGGAG 1 cut(s) 311
BseX3I CGGCCG 1 cut(s) 208
BseXI GCAGC 7 cut(s) 133, 136, 154, 367, 734, 1217, 1384
BsgI GTGCAG 1 cut(s) 954
Bsh1236I CGCG 2 cut(s) 187, 213
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 4 cut(s) 210, 948, 954, 1218
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 3 cut(s) 219, 370, 910
BsiSI CCGG 4 cut(s) 41, 93, 152, 1006
BslI CCNNNNNNNGG 3 cut(s) 240, 961, 962
BsmAI GTCTC 1 cut(s) 421
BsmBI CGTCTC 1 cut(s) 421
BsmI GAATGC 1 cut(s) 1303
BsnI GGCC 4 cut(s) 210, 948, 954, 1218
Bsp1286I GDGCHC 4 cut(s) 219, 370, 634, 910
Bsp13I TCCGGA 1 cut(s) 1005
Bsp143I GATC 2 cut(s) 132, 455
BspACI CCGC 9 cut(s) 173, 187, 207, 211, 222, 225, 378, 705, 870
BspANI GGCC 4 cut(s) 210, 948, 954, 1218
BspCNI CTCAG 5 cut(s) 120, 248, 667, 910, 1006
BspEI TCCGGA 1 cut(s) 1005
BspFNI CGCG 2 cut(s) 187, 213
BspLI GGNNCC 3 cut(s) 134, 412, 484
BspPI GGATC 3 cut(s) 127, 140, 463
BsrDI GCAATG 2 cut(s) 1047, 1317
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 2 cut(s) 88, 1169
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 821, 949
BssMI GATC 2 cut(s) 132, 455
BssNAI GTATAC 1 cut(s) 750
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 2 cut(s) 821, 949
Bst1107I GTATAC 1 cut(s) 750
Bst2BI CACGAG 1 cut(s) 396
Bst4CI ACNGT 3 cut(s) 415, 590, 1397
BstAPI GCANNNNNTGC 1 cut(s) 533
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 4 cut(s) 215, 560, 868, 1275
BstDEI CTNAG 5 cut(s) 128, 235, 675, 897, 993
BstF5I GGATG 4 cut(s) 559, 865, 1093, 1109
BstFNI CGCG 2 cut(s) 187, 213
BstKTI GATC 2 cut(s) 135, 458
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 2 cut(s) 132, 455
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 5 cut(s) 148, 386, 533, 914, 1116
BstNSI RCATGY 5 cut(s) 615, 870, 888, 1245, 1379
BstPAI GACNNNNGTC 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 92
BstUI CGCG 2 cut(s) 187, 213
BstV1I GCAGC 7 cut(s) 133, 136, 154, 367, 734, 1217, 1384
BstX2I RGATCY 1 cut(s) 132
BstXI CCANNNNNNTGG 1 cut(s) 1176
BstYI RGATCY 1 cut(s) 132
BstZ17I GTATAC 1 cut(s) 750
BstZI CGGCCG 1 cut(s) 208
BsuI GTATCC 1 cut(s) 1170
BsuRI GGCC 4 cut(s) 210, 948, 954, 1218
BtgZI GCGATG 1 cut(s) 551
BtsCI GGATG 4 cut(s) 559, 865, 1093, 1109
Cac8I GCNNGC 4 cut(s) 215, 560, 868, 1275
CaiI CAGNNNCTG 1 cut(s) 127
CciNI GCGGCCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 953
CseI GACGC 1 cut(s) 1311
Csp6I GTAC 5 cut(s) 168, 375, 712, 878, 1245
CviQI GTAC 5 cut(s) 168, 375, 712, 878, 1245
DdeI CTNAG 5 cut(s) 128, 235, 675, 897, 993
DpnI GATC 2 cut(s) 134, 457
DpnII GATC 2 cut(s) 132, 455
DriI GACNNNNNGTC 1 cut(s) 1321
EaeI YGGCCR 2 cut(s) 208, 1216
EagI CGGCCG 1 cut(s) 208
Eam1105I GACNNNNNGTC 1 cut(s) 1321
Ecl136II GAGCTC 1 cut(s) 908
EclXI CGGCCG 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 821, 949
Eco147I AGGCCT 1 cut(s) 948
Eco24I GRGCYC 2 cut(s) 634, 910
Eco52I CGGCCG 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 908
EcoICRI GAGCTC 1 cut(s) 908
EcoRI GAATTC 1 cut(s) 1095
EcoT14I CCWWGG 2 cut(s) 821, 949
EcoT22I ATGCAT 2 cut(s) 649, 1243
EcoT38I GRGCYC 2 cut(s) 634, 910
ErhI CCWWGG 2 cut(s) 821, 949
Esp3I CGTCTC 1 cut(s) 421
FauI CCCGC 2 cut(s) 166, 698
FauNDI CATATG 1 cut(s) 649
FblI GTMKAC 1 cut(s) 749
FokI GGATG 4 cut(s) 566, 872, 1100, 1116
FriOI GRGCYC 2 cut(s) 634, 910
FspBI CTAG 5 cut(s) 662, 761, 822, 1035, 1326
GsuI CTGGAG 1 cut(s) 1152
HaeIII GGCC 4 cut(s) 210, 948, 954, 1218
HapII CCGG 4 cut(s) 41, 93, 152, 1006
HgaI GACGC 1 cut(s) 1311
HincII GTYRAC 2 cut(s) 776, 1233
HindII GTYRAC 2 cut(s) 776, 1233
HindIII AAGCTT 1 cut(s) 567
HinfI GANTC 4 cut(s) 448, 460, 895, 989
HpaII CCGG 4 cut(s) 41, 93, 152, 1006
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 6 cut(s) 46, 168, 750, 776, 1058, 1233
Hpy188I TCNGA 8 cut(s) 54, 108, 238, 315, 550, 733, 900, 1339
Hpy188III TCNNGA 4 cut(s) 136, 398, 1006, 1326
Hpy8I GTNNAC 6 cut(s) 46, 168, 750, 776, 1058, 1233
HpyAV CCTTC 6 cut(s) 109, 420, 611, 803, 895, 1246
HpyCH4III ACNGT 3 cut(s) 415, 590, 1397
HpyCH4IV ACGT 3 cut(s) 72, 370, 469
HpyCH4V TGCA 9 cut(s) 389, 647, 866, 935, 978, 1042, 1205, 1241, 1277
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 386, 533, 914, 1116
HpyF3I CTNAG 5 cut(s) 128, 235, 675, 897, 993
HpySE526I ACGT 3 cut(s) 72, 370, 469
Kpn2I TCCGGA 1 cut(s) 1005
Kzo9I GATC 2 cut(s) 132, 455
LmnI GCTCC 7 cut(s) 118, 154, 260, 298, 365, 482, 905
Lsp1109I GCAGC 7 cut(s) 133, 136, 154, 367, 734, 1217, 1384
LweI GCATC 3 cut(s) 1139, 1228, 1330
MaeI CTAG 5 cut(s) 662, 761, 822, 1035, 1326
MaeII ACGT 3 cut(s) 72, 370, 469
MaeIII GTNAC 3 cut(s) 229, 330, 892
MalI GATC 2 cut(s) 134, 457
MboI GATC 2 cut(s) 132, 455
MboII GAAGA 5 cut(s) 315, 328, 455, 697, 1104
MfeI CAATTG 1 cut(s) 278
MflI RGATCY 1 cut(s) 132
MhlI GDGCHC 4 cut(s) 219, 370, 634, 910
MlsI TGGCCA 1 cut(s) 1218
MluCI AATT 5 cut(s) 181, 278, 1095, 1256, 1265
MluNI TGGCCA 1 cut(s) 1218
MlyI GAGTC 1 cut(s) 889
MmeI TCCRAC 3 cut(s) 77, 86, 1055
Mox20I TGGCCA 1 cut(s) 1218
Mph1103I ATGCAT 2 cut(s) 649, 1243
MroI TCCGGA 1 cut(s) 1005
MroXI GAANNNNTTC 1 cut(s) 1333
MscI TGGCCA 1 cut(s) 1218
MseI TTAA 1 cut(s) 1287
MslI CAYNNNNRTG 2 cut(s) 885, 1380
Msp20I TGGCCA 1 cut(s) 1218
MspA1I CMGCKG 4 cut(s) 127, 227, 380, 1208
MspI CCGG 4 cut(s) 41, 93, 152, 1006
MspR9I CCNGG 1 cut(s) 94
MunI CAATTG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 1303
MvnI CGCG 2 cut(s) 187, 213
MwoI GCNNNNNNNGC 5 cut(s) 148, 386, 533, 914, 1116
NciI CCSGG 1 cut(s) 94
NdeI CATATG 1 cut(s) 649
NdeII GATC 2 cut(s) 132, 455
NlaIV GGNNCC 3 cut(s) 134, 412, 484
NmuCI GTSAC 1 cut(s) 892
NotI GCGGCCGC 1 cut(s) 208
NsiI ATGCAT 2 cut(s) 649, 1243
NspI RCATGY 5 cut(s) 615, 870, 888, 1245, 1379
PaeI GCATGC 1 cut(s) 870
PceI AGGCCT 1 cut(s) 948
PciI ACATGT 2 cut(s) 611, 884
PctI GAATGC 1 cut(s) 1303
PdmI GAANNNNTTC 1 cut(s) 1333
PfeI GAWTC 3 cut(s) 448, 460, 989
PleI GAGTC 1 cut(s) 889
PpsI GAGTC 1 cut(s) 889
Ppu21I YACGTR 1 cut(s) 73
PscI ACATGT 2 cut(s) 611, 884
PshAI GACNNNNGTC 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 910
PspN4I GGNNCC 3 cut(s) 134, 412, 484
PspPI GGNCC 1 cut(s) 953
PstNI CAGNNNCTG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 132
PvuII CAGCTG 2 cut(s) 127, 1208
RsaI GTAC 5 cut(s) 169, 376, 713, 879, 1246
RsaNI GTAC 5 cut(s) 168, 375, 712, 878, 1245
RseI CAYNNNNRTG 2 cut(s) 885, 1380
SacI GAGCTC 1 cut(s) 910
SaqAI TTAA 1 cut(s) 1287
Sau3AI GATC 2 cut(s) 132, 455
Sau96I GGNCC 1 cut(s) 953
SchI GAGTC 1 cut(s) 889
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 4 cut(s) 219, 370, 634, 910
SfaNI GCATC 3 cut(s) 1139, 1228, 1330
SmiMI CAYNNNNRTG 2 cut(s) 885, 1380
SpeI ACTAGT 1 cut(s) 1034
SphI GCATGC 1 cut(s) 870
Sse9I AATT 5 cut(s) 181, 278, 1095, 1256, 1265
SseBI AGGCCT 1 cut(s) 948
SsiI CCGC 9 cut(s) 173, 187, 207, 211, 222, 225, 378, 705, 870
SspI AATATT 1 cut(s) 1012
SspMI CTAG 5 cut(s) 662, 761, 822, 1035, 1326
SstI GAGCTC 1 cut(s) 910
StuI AGGCCT 1 cut(s) 948
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 2 cut(s) 821, 949
TaaI ACNGT 3 cut(s) 415, 590, 1397
TaiI ACGT 3 cut(s) 75, 373, 472
TaqI TCGA 1 cut(s) 458
TasI AATT 5 cut(s) 181, 278, 1095, 1256, 1265
TauI GCSGC 3 cut(s) 210, 213, 227
TfiI GAWTC 3 cut(s) 448, 460, 989
Tru1I TTAA 1 cut(s) 1287
Tru9I TTAA 1 cut(s) 1287
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 7 cut(s) 121, 124, 142, 380, 722, 1205, 1372
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 7 cut(s) 17, 521, 597, 681, 963, 1002, 1088
TspGWI ACGGA 1 cut(s) 308
XapI RAATTY 2 cut(s) 1095, 1265
XbaI TCTAGA 1 cut(s) 1325
XceI RCATGY 5 cut(s) 615, 870, 888, 1245, 1379
XcmI CCANNNNNNNNNTGG 1 cut(s) 474
XmaJI CCTAGG 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 749
XmnI GAANNNNTTC 1 cut(s) 1333
XspI CTAG 5 cut(s) 662, 761, 822, 1035, 1326
Zsp2I ATGCAT 2 cut(s) 649, 1243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.