Rroxscaffold_2G00086200

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011361
Physical Location & Seq
Reverse (-)
8446676 .. 8450388
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086200.1

Sequence Viewer

Length: 1401 bp
ATGGATATCGAGGAACTATTGGGCCGAAACCGACCGGCGGCAATCAAGGCGAGGAGTGCGATTTACGTCTGGGGATATAACCAGTCCGGCCAGACTGGTCGGAAGGGGAGAGAGCGTCAGTTGAGGATCCCGAAGCAGCTCTCGCCGGAGCTCTTTGGATGCCCCGCCGGAGCTAATTCGCGCTGGCTGGACATTGCTTGTGGCCGCGAGCATACCGCAGCTGTAGCTTCAGATGGGTCTCTCTTCACTTGGGGGGCTAATGAATTTGGTCAATTGGGAGATGGAACTGAGGAGAGAAGTAAACATCCAAAGAAAGTGAAGCAATTGGAGACGGAGTTTGTGAAGTCTGTATCTTGTGGAGCACATTGTACAGCTGCCATTGCAGAGCCTCGCAAGAATGATGGAACCATGTCGACAAGGTTCAAATCTGCCGCGTTTATTTTGGGGGCCTTTGCTCCAAACACGGCTATCCGTCAAATATCTTGTGGAGCAGCTCATGTGATGGCTTTATCAGAGGATGGCCTGCTACAAGCTTGGGGATACAATGAATTTGGCCAGCTTGGTAGAGGCGTTACATGTGAAGGATTACAAGGGGCTCGTATAATAAATGCTTATGCAAAGTTCCTTGATGAATCCCCTGAGCTTGTGAAGATTACCCAAGTGTCATGTGGGGAGTACCACACAGCAGCTCTATCTGAAGATGGCGAGGTGTATACTTGGGGGTTGGGAAGCATGGGGCAACTTGGTCATTGTTCTCTTCAATCTGTTGATAAAGAGTTATTGCCAAGGAGAGTGGTCGCACTTGATGCAATCTTCATGAAGGACGTGGCATGTGGCGGTGTGCATACATGTGCTGTGACTCAGAAGGGAGCTCTTTATGCTTGGGGTGGCAGTCGAGCAGGACAATTAGGCCTTGGCCCTGAAACTGGATTCTTTTCATGTAATCCTAATGAGTCTGCAAGCTTTTTCCGAAATATTCCTGCTTTGGTTATTCCACTTGGTGTGCAGCTCATTGCATGTGGACATTCCCATACACTTATTTCTACAAGGGAAGGAAGGATTCATGGATGGGGCTACAACAGCTATGGTCAGGCATCTAATGAGAAATCTACTTATGCTTGGTATCCATCTCCAGTTGATTGGTGTGTTGGGGCAGTTCAAAAACTTGCAGCTGGTGGGGGACATTCAGCTGTGTTGACCGATGCATGTTCCTTGAAGGAATTGTGCGAATTTAGGCTTGCAGATAGTGTGACTTCGACCAATGCTTCTATTATTGAGGACATTGCGTCTAGAACAGATTCAGATAATTTAGTACGCCTATGTGAAAGATTGAGGCAGCACATGCTTGATGGTGGCGACTACGAATTTGAAGATGATGAGCCAAATAGTTATAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1

Protein Analysis

466

Amino Acids

50.36

Weight (kDa)

6.09

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 11 - 129 2.9e-25 RCC1-like domain
RCC1 PF00415 21 - 75 1.1e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 64 - 91 4.2e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 78 - 127 1.1e-15 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 153 - 398 5.9e-54 RCC1-like domain
RCC1_2 PF13540 157 - 186 6.5e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 173 - 231 7.2e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 218 - 247 1.5e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 234 - 286 3.1e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 274 - 302 1.8e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 289 - 346 6.4e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 336 - 364 3.6e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02300 AT3G02300
fragaria_vesca FvH4_6g46400 FvH4_6g46400
malus_domestica MD09G1074200.v1.1 MD17G1065600.v1.1
prunus_persica Prupe.3G249200_v2.0.a1 Prupe.3G249200_v2.0.a1
pyrus_communis pycom09g00130 pycom17g06550
rosa_chinensis RchiOBHm_Chr2g0164931
rosa_laevigata RLG00000021498
rosa_multiflora Rmu_sc0001097.1_g000002
rosa_roxburghii Rroxscaffold_2G00086200
rosa_rugosa Rorug02G0511300
rosa_samantha Rh2AG579600 Rh2BG590600 Rh2CG561300 Rh2DG601000
rosa_wichuraiana Rw2G048110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 413, 713
AccII CGCG 3 cut(s) 181, 207, 434
AciI CCGC 6 cut(s) 38, 165, 205, 216, 432, 837
AclWI GGATC 2 cut(s) 121, 134
AcoI YGGCCR 3 cut(s) 88, 202, 553
AcsI RAATTY 4 cut(s) 263, 548, 1229, 1364
AcuI CTGAAG 2 cut(s) 213, 717
AdeI CACNNNGTG 1 cut(s) 1001
AfaI GTAC 3 cut(s) 370, 677, 1314
AfiI CCNNNNNNNGG 2 cut(s) 37, 926
AflIII ACRYGT 2 cut(s) 575, 848
AgsI TTSAA 5 cut(s) 424, 761, 1160, 1216, 1370
AhdI GACNNNNNGTC 1 cut(s) 1285
AjiI CACGTC 1 cut(s) 826
Alw21I GWGCWC 3 cut(s) 153, 364, 874
Alw26I GTCTC 2 cut(s) 243, 323
AlwI GGATC 2 cut(s) 121, 134
AoxI GGCC 8 cut(s) 22, 88, 202, 447, 520, 553, 910, 916
ApeKI GCWGC 8 cut(s) 136, 218, 374, 491, 686, 1006, 1169, 1336
ApoI RAATTY 4 cut(s) 263, 548, 1229, 1364
ArsI GACNNNNNNTTYG 2 cut(s) 1349, 1381
Asp700I GAANNNNTTC 1 cut(s) 1297
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 3 cut(s) 22, 447, 917
BalI TGGCCA 1 cut(s) 555
BamHI GGATCC 1 cut(s) 126
BanII GRGCYC 3 cut(s) 153, 598, 874
Bbv12I GWGCWC 3 cut(s) 153, 364, 874
BbvI GCAGC 8 cut(s) 148, 230, 361, 503, 698, 1018, 1181, 1348
BccI CCATC 9 cut(s) 227, 275, 395, 496, 512, 695, 1062, 1135, 1343
BceAI ACGGC 1 cut(s) 480
BciVI GTATCC 2 cut(s) 533, 1134
BcoDI GTCTC 2 cut(s) 243, 323
BfaI CTAG 1 cut(s) 1290
BfmI CTRYAG 1 cut(s) 222
BfuI GTATCC 2 cut(s) 533, 1134
BmeRI GACNNNNNGTC 1 cut(s) 1285
BmgBI CACGTC 1 cut(s) 826
BmgT120I GGNCC 3 cut(s) 22, 447, 917
BmiI GGNNCC 3 cut(s) 128, 406, 448
BmsI GCATC 4 cut(s) 149, 796, 1103, 1192
BpmI CTGGAG 1 cut(s) 1116
Bpu10I CCTNAGC 1 cut(s) 639
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 785, 913
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 320, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 926
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 4 cut(s) 82, 100, 931, 1133
Bse3DI GCAATG 4 cut(s) 192, 378, 1011, 1281
BseDI CCNNGG 2 cut(s) 785, 913
BseGI GGATG 4 cut(s) 164, 304, 523, 1073
BseLI CCNNNNNNNGG 2 cut(s) 37, 926
BseMI GCAATG 4 cut(s) 192, 378, 1011, 1281
BseMII CTCAG 3 cut(s) 279, 630, 875
BseNI ACTGG 4 cut(s) 82, 100, 931, 1133
BseRI GAGGAG 2 cut(s) 67, 305
BseXI GCAGC 8 cut(s) 148, 230, 361, 503, 698, 1018, 1181, 1348
BsgI GTGCAG 1 cut(s) 1025
Bsh1236I CGCG 3 cut(s) 181, 207, 434
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 8 cut(s) 24, 90, 204, 449, 522, 555, 912, 918
BsiEI CGRYCG 1 cut(s) 35
BsiHKAI GWGCWC 3 cut(s) 153, 364, 874
BsiSI CCGG 4 cut(s) 35, 87, 146, 168
BslFI GGGAC 1 cut(s) 1194
BslI CCNNNNNNNGG 2 cut(s) 37, 926
BsmAI GTCTC 2 cut(s) 243, 323
BsmBI CGTCTC 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 1194
BsnI GGCC 8 cut(s) 24, 90, 204, 449, 522, 555, 912, 918
Bso31I GGTCTC 1 cut(s) 243
Bsp1286I GDGCHC 4 cut(s) 153, 364, 598, 874
Bsp1407I TGTACA 1 cut(s) 368
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 6 cut(s) 38, 165, 205, 216, 432, 837
BspANI GGCC 8 cut(s) 24, 90, 204, 449, 522, 555, 912, 918
BspCNI CTCAG 3 cut(s) 280, 631, 874
BspFNI CGCG 3 cut(s) 181, 207, 434
BspHI TCATGA 1 cut(s) 816
BspLI GGNNCC 3 cut(s) 128, 406, 448
BspPI GGATC 2 cut(s) 121, 134
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 4 cut(s) 192, 378, 1011, 1281
BsrFI RCCGGY 1 cut(s) 34
BsrGI TGTACA 1 cut(s) 368
BsrI ACTGG 4 cut(s) 82, 100, 931, 1133
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 785, 913
BssMI GATC 1 cut(s) 126
BssNAI GTATAC 1 cut(s) 714
BssT1I CCWWGG 2 cut(s) 785, 913
Bst1107I GTATAC 1 cut(s) 714
Bst6I CTCTTC 2 cut(s) 248, 762
BstAPI GCANNNNNTGC 2 cut(s) 806, 1342
BstAUI TGTACA 1 cut(s) 368
BstC8I GCNNGC 6 cut(s) 185, 209, 524, 557, 961, 1239
BstDEI CTNAG 3 cut(s) 288, 639, 861
BstF5I GGATG 4 cut(s) 164, 304, 523, 1073
BstFNI CGCG 3 cut(s) 181, 207, 434
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 2 cut(s) 243, 323
BstMBI GATC 1 cut(s) 126
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 9 cut(s) 47, 56, 142, 224, 380, 806, 878, 1080, 1342
BstNSI RCATGY 6 cut(s) 579, 834, 852, 1020, 1209, 1345
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 3 cut(s) 181, 207, 434
BstV1I GCAGC 8 cut(s) 148, 230, 361, 503, 698, 1018, 1181, 1348
BstX2I RGATCY 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 1140
BstYI RGATCY 1 cut(s) 126
BstZ17I GTATAC 1 cut(s) 714
BsuI GTATCC 2 cut(s) 533, 1134
BsuRI GGCC 8 cut(s) 24, 90, 204, 449, 522, 555, 912, 918
BtrI CACGTC 1 cut(s) 826
BtsCI GGATG 4 cut(s) 164, 304, 523, 1073
Cac8I GCNNGC 6 cut(s) 185, 209, 524, 557, 961, 1239
CciI TCATGA 1 cut(s) 816
CfoI GCGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 3 cut(s) 22, 447, 917
CseI GACGC 2 cut(s) 104, 1275
Csp6I GTAC 3 cut(s) 369, 676, 1313
CspCI CAANNNNNGTGG 2 cut(s) 774, 809
CviQI GTAC 3 cut(s) 369, 676, 1313
DdeI CTNAG 3 cut(s) 288, 639, 861
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
DraIII CACNNNGTG 1 cut(s) 1001
DriI GACNNNNNGTC 1 cut(s) 1285
EaeI YGGCCR 3 cut(s) 88, 202, 553
Eam1104I CTCTTC 2 cut(s) 248, 762
Eam1105I GACNNNNNGTC 1 cut(s) 1285
EarI CTCTTC 2 cut(s) 248, 762
Ecl136II GAGCTC 2 cut(s) 151, 872
Eco130I CCWWGG 2 cut(s) 785, 913
Eco147I AGGCCT 1 cut(s) 912
Eco24I GRGCYC 3 cut(s) 153, 598, 874
Eco31I GGTCTC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 7
Eco53kI GAGCTC 2 cut(s) 151, 872
Eco57I CTGAAG 2 cut(s) 213, 717
EcoICRI GAGCTC 2 cut(s) 151, 872
EcoO109I RGGNCCY 1 cut(s) 447
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 2 cut(s) 785, 913
EcoT22I ATGCAT 1 cut(s) 1207
EcoT38I GRGCYC 3 cut(s) 153, 598, 874
ErhI CCWWGG 2 cut(s) 785, 913
Esp3I CGTCTC 1 cut(s) 323
FaqI GGGAC 1 cut(s) 1194
FauI CCCGC 1 cut(s) 172
FblI GTMKAC 2 cut(s) 413, 713
FokI GGATG 4 cut(s) 171, 291, 530, 1080
FriOI GRGCYC 3 cut(s) 153, 598, 874
FspBI CTAG 1 cut(s) 1290
GlaI GCGC 1 cut(s) 182
GsuI CTGGAG 1 cut(s) 1116
HaeIII GGCC 8 cut(s) 24, 90, 204, 449, 522, 555, 912, 918
HapII CCGG 4 cut(s) 35, 87, 146, 168
HgaI GACGC 2 cut(s) 104, 1275
HhaI GCGC 1 cut(s) 183
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HincII GTYRAC 2 cut(s) 414, 1197
HindII GTYRAC 2 cut(s) 414, 1197
HindIII AAGCTT 2 cut(s) 531, 961
HinfI GANTC 6 cut(s) 632, 859, 930, 953, 1060, 1298
HpaII CCGG 4 cut(s) 35, 87, 146, 168
Hpy166II GTNNAC 5 cut(s) 302, 414, 714, 1022, 1197
Hpy188I TCNGA 7 cut(s) 102, 232, 514, 697, 864, 971, 1303
Hpy188III TCNNGA 3 cut(s) 130, 817, 1290
Hpy8I GTNNAC 5 cut(s) 302, 414, 714, 1022, 1197
HpyAV CCTTC 7 cut(s) 97, 575, 814, 859, 1046, 1050, 1210
HpyCH4IV ACGT 2 cut(s) 66, 825
HpyF10VI GCNNNNNNNGC 9 cut(s) 47, 56, 142, 224, 380, 806, 878, 1080, 1342
HpyF3I CTNAG 3 cut(s) 288, 639, 861
HpySE526I ACGT 2 cut(s) 66, 825
HspAI GCGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 6 cut(s) 148, 170, 359, 460, 488, 869
Lsp1109I GCAGC 8 cut(s) 148, 230, 361, 503, 698, 1018, 1181, 1348
LweI GCATC 4 cut(s) 149, 796, 1103, 1192
MaeI CTAG 1 cut(s) 1290
MaeII ACGT 2 cut(s) 66, 825
MaeIII GTNAC 3 cut(s) 571, 856, 1249
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 6 cut(s) 235, 661, 710, 749, 805, 1382
MfeI CAATTG 2 cut(s) 272, 323
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 4 cut(s) 153, 364, 598, 874
MlsI TGGCCA 1 cut(s) 555
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 2 cut(s) 853, 962
MmeI TCCRAC 1 cut(s) 80
Mox20I TGGCCA 1 cut(s) 555
Mph1103I ATGCAT 1 cut(s) 1207
MroXI GAANNNNTTC 1 cut(s) 1297
MscI TGGCCA 1 cut(s) 555
MslI CAYNNNNRTG 1 cut(s) 849
Msp20I TGGCCA 1 cut(s) 555
MspA1I CMGCKG 4 cut(s) 221, 374, 1172, 1190
MspI CCGG 4 cut(s) 35, 87, 146, 168
MunI CAATTG 2 cut(s) 272, 323
MvnI CGCG 3 cut(s) 181, 207, 434
MwoI GCNNNNNNNGC 9 cut(s) 47, 56, 142, 224, 380, 806, 878, 1080, 1342
NdeII GATC 1 cut(s) 126
NlaIV GGNNCC 3 cut(s) 128, 406, 448
NmuCI GTSAC 2 cut(s) 856, 1249
NsiI ATGCAT 1 cut(s) 1207
NspI RCATGY 6 cut(s) 579, 834, 852, 1020, 1209, 1345
PagI TCATGA 1 cut(s) 816
PceI AGGCCT 1 cut(s) 912
PciI ACATGT 2 cut(s) 575, 848
PdmI GAANNNNTTC 1 cut(s) 1297
PfeI GAWTC 4 cut(s) 632, 930, 1060, 1298
PleI GAGTC 2 cut(s) 853, 961
PpsI GAGTC 2 cut(s) 853, 961
PscI ACATGT 2 cut(s) 575, 848
Psp124BI GAGCTC 2 cut(s) 153, 874
PspN4I GGNNCC 3 cut(s) 128, 406, 448
PspPI GGNCC 3 cut(s) 22, 447, 917
PsuI RGATCY 1 cut(s) 126
PvuII CAGCTG 4 cut(s) 221, 374, 1172, 1190
RsaI GTAC 3 cut(s) 370, 677, 1314
RsaNI GTAC 3 cut(s) 369, 676, 1313
RseI CAYNNNNRTG 1 cut(s) 849
SacI GAGCTC 2 cut(s) 153, 874
SalI GTCGAC 1 cut(s) 412
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 3 cut(s) 22, 447, 917
SchI GAGTC 2 cut(s) 853, 962
SduI GDGCHC 4 cut(s) 153, 364, 598, 874
SfaNI GCATC 4 cut(s) 149, 796, 1103, 1192
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 849
SseBI AGGCCT 1 cut(s) 912
SsiI CCGC 6 cut(s) 38, 165, 205, 216, 432, 837
SspI AATATT 1 cut(s) 976
SspMI CTAG 1 cut(s) 1290
SstI GAGCTC 2 cut(s) 153, 874
StuI AGGCCT 1 cut(s) 912
StyI CCWWGG 2 cut(s) 785, 913
TaiI ACGT 2 cut(s) 69, 828
TaqI TCGA 4 cut(s) 9, 413, 895, 1256
TaqII GACCGA 1 cut(s) 1214
TatI WGTACW 1 cut(s) 368
TauI GCSGC 3 cut(s) 41, 207, 434
TfiI GAWTC 4 cut(s) 632, 930, 1060, 1298
TseFI GTSAC 2 cut(s) 856, 1249
TseI GCWGC 8 cut(s) 136, 218, 374, 491, 686, 1006, 1169, 1336
Tsp45I GTSAC 2 cut(s) 856, 1249
TspDTI ATGAA 7 cut(s) 276, 561, 645, 805, 833, 927, 1052
TspGWI ACGGA 2 cut(s) 347, 461
XapI RAATTY 4 cut(s) 263, 548, 1229, 1364
XbaI TCTAGA 1 cut(s) 1289
XceI RCATGY 6 cut(s) 579, 834, 852, 1020, 1209, 1345
XcmI CCANNNNNNNNNTGG 1 cut(s) 665
XmiI GTMKAC 2 cut(s) 413, 713
XmnI GAANNNNTTC 1 cut(s) 1297
XspI CTAG 1 cut(s) 1290
Zsp2I ATGCAT 1 cut(s) 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.