AT3G03880

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0018758
Physical Location & Seq
Forward (+)
997724 .. 999359
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03880.1

Sequence Viewer

Length: 582 bp
ATGTCGTCATCGTTAGAACAAGAAATCTTCTTACAGTGGGGAAACAAGAAGAGATTGAGATGTCTTAGAGCCAAAGCCAAAAAGATCTCTCGTTCTAAAAACTCTTCTCGCTTTCTAGGTCAAGATACCGTCCTCCTTCAATCCTCTAGATTCTCCAGAGGATCAGAAGGAGCAATCCTCAGATCTGGACTACCAGATCGCCGGAGACCGTCTCCGGAGAAAGAGGAGAGGTATTATACTACGAGAGGTGTAGTGGATAACATTGGGAAAGATTGTTTAGATGGAAACATCAATGGAGAAGATAGCAACAACAAGGAAGAGAGTATGTGGCCTAAGCTCTTTATAACATTATCAAACAAAGAGAAAGAAGAAGATTTCATGGCTATGAAAGGTTGCAAACCTTCTCATAGGCCTAAGAAGAGAGCTAAACTCATCCAAAGAAGCTTACTTTTGGTGAGTCCTGGAACATGGTTGGCTGATTTGTGCCCTGATAGATACGATGTTAGGGTGAAGAAGAGCTCTAAGAAGAGGCGAGCAAGAGGGCTAAAAGCCATGGGAAACATGGAGACTGATTCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

193

Amino Acids

22.11

Weight (kDa)

10.04

Isoelectric Point (pI)

77.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 117 - 166 4.7e-23 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018758)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03880
malus_domestica MD12G1004100.v1.1 MD12G1004300.v1.1 MD14G1003000.v1.1
prunus_persica Prupe.7G004700_v2.0.a1 Prupe.7G004700_v2.0.a1 Prupe.7G004700_v2.0.a1
pyrus_communis pycom12g00370 pycom14g00090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AccIII TCCGGA 1 cut(s) 214
AclWI GGATC 1 cut(s) 169
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 460
AluBI AGCT 4 cut(s) 337, 425, 444, 519
AluI AGCT 4 cut(s) 337, 425, 444, 519
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 3 cut(s) 199, 216, 560
AlwI GGATC 1 cut(s) 169
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 2 cut(s) 329, 410
AsuHPI GGTGA 2 cut(s) 466, 520
BaeGI GKGCMC 1 cut(s) 488
BanII GRGCYC 1 cut(s) 521
Bbv12I GWGCWC 1 cut(s) 521
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 462
BcoDI GTCTC 3 cut(s) 199, 216, 560
BfaI CTAG 2 cut(s) 116, 147
BglII AGATCT 2 cut(s) 84, 182
Bme1390I CCNGG 1 cut(s) 462
BmrFI CCNGG 1 cut(s) 462
BplI GAGNNNNNCTC 6 cut(s) 162, 194, 196, 228, 414, 446
BpmI CTGGAG 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 552
BsaWI WCCGGW 1 cut(s) 214
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 552
BseGI GGATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 488
BshFI GGCC 2 cut(s) 331, 412
BsiHKAI GWGCWC 1 cut(s) 521
BsiSI CCGG 2 cut(s) 202, 215
BsmAI GTCTC 3 cut(s) 199, 216, 560
BsmBI CGTCTC 1 cut(s) 216
BsnI GGCC 2 cut(s) 331, 412
Bso31I GGTCTC 1 cut(s) 199
Bsp1286I GDGCHC 2 cut(s) 488, 521
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 4 cut(s) 84, 161, 182, 196
Bsp19I CCATGG 1 cut(s) 552
BspANI GGCC 2 cut(s) 331, 412
BspCNI CTCAG 1 cut(s) 192
BspEI TCCGGA 1 cut(s) 214
BspPI GGATC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 509
BspTNI GGTCTC 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 552
BssMI GATC 4 cut(s) 84, 161, 182, 196
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 3 cut(s) 36, 130, 210
Bst6I CTCTTC 6 cut(s) 44, 109, 312, 413, 509, 521
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 5 cut(s) 65, 179, 333, 414, 522
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 1 cut(s) 432
BstKTI GATC 4 cut(s) 87, 164, 185, 199
BstMAI GTCTC 3 cut(s) 199, 216, 560
BstMBI GATC 4 cut(s) 84, 161, 182, 196
BstNI CCWGG 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 460
BstSLI GKGCMC 1 cut(s) 488
BstX2I RGATCY 2 cut(s) 84, 182
BstYI RGATCY 2 cut(s) 84, 182
BsuRI GGCC 2 cut(s) 331, 412
BtgI CCRYGG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 534
CviAII CATG 4 cut(s) 379, 468, 553, 562
DdeI CTNAG 5 cut(s) 65, 179, 333, 414, 522
DpnI GATC 4 cut(s) 86, 163, 184, 198
DpnII GATC 4 cut(s) 84, 161, 182, 196
Eam1104I CTCTTC 6 cut(s) 44, 109, 312, 413, 509, 521
EarI CTCTTC 6 cut(s) 44, 109, 312, 413, 509, 521
Ecl136II GAGCTC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 552
Eco147I AGGCCT 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 521
Eco31I GGTCTC 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 519
EcoICRI GAGCTC 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 552
EcoT38I GRGCYC 1 cut(s) 521
ErhI CCWWGG 1 cut(s) 552
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 4 cut(s) 382, 471, 556, 565
FaiI YATR 9 cut(s) 237, 326, 344, 380, 386, 408, 469, 554, 563
FatI CATG 4 cut(s) 378, 467, 552, 561
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 521
FspBI CTAG 2 cut(s) 116, 147
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 2 cut(s) 331, 412
HapII CCGG 2 cut(s) 202, 215
Hin1II CATG 4 cut(s) 382, 471, 556, 565
HindIII AAGCTT 1 cut(s) 442
HinfI GANTC 3 cut(s) 150, 457, 572
HpaII CCGG 2 cut(s) 202, 215
HphI GGTGA 2 cut(s) 466, 520
Hpy188I TCNGA 3 cut(s) 166, 182, 577
Hpy188III TCNNGA 5 cut(s) 122, 147, 156, 186, 215
HpyAV CCTTC 3 cut(s) 146, 161, 411
HpyCH4III ACNGT 3 cut(s) 36, 130, 210
HpyCH4V TGCA 1 cut(s) 396
HpyF3I CTNAG 5 cut(s) 65, 179, 333, 414, 522
Hsp92II CATG 4 cut(s) 382, 471, 556, 565
Kpn2I TCCGGA 1 cut(s) 214
Kzo9I GATC 4 cut(s) 84, 161, 182, 196
LguI GCTCTTC 1 cut(s) 509
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 8 cut(s) 169, 171, 207, 215, 228, 447, 474, 501
MaeI CTAG 2 cut(s) 116, 147
MalI GATC 4 cut(s) 86, 163, 184, 198
MboI GATC 4 cut(s) 84, 161, 182, 196
MflI RGATCY 2 cut(s) 84, 182
MhlI GDGCHC 2 cut(s) 488, 521
MlyI GAGTC 1 cut(s) 466
MnlI CCTC 9 cut(s) 143, 152, 154, 188, 217, 222, 239, 522, 533
MroI TCCGGA 1 cut(s) 214
MslI CAYNNNNRTG 1 cut(s) 383
MspI CCGG 2 cut(s) 202, 215
MspR9I CCNGG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 462
NcoI CCATGG 1 cut(s) 552
NdeII GATC 4 cut(s) 84, 161, 182, 196
NlaIII CATG 4 cut(s) 382, 471, 556, 565
PceI AGGCCT 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 509
PfeI GAWTC 2 cut(s) 150, 572
PfoI TCCNGGA 1 cut(s) 460
PleI GAGTC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 465
PsiI TTATAA 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PsuI RGATCY 2 cut(s) 84, 182
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 521
SapI GCTCTTC 1 cut(s) 509
Sau3AI GATC 4 cut(s) 84, 161, 182, 196
SchI GAGTC 1 cut(s) 466
ScrFI CCNGG 1 cut(s) 462
SduI GDGCHC 2 cut(s) 488, 521
SetI ASST 9 cut(s) 121, 233, 250, 339, 394, 403, 427, 446, 521
SmiMI CAYNNNNRTG 1 cut(s) 383
SseBI AGGCCT 1 cut(s) 412
SspMI CTAG 2 cut(s) 116, 147
SstI GAGCTC 1 cut(s) 521
StuI AGGCCT 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 460
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 3 cut(s) 36, 130, 210
TfiI GAWTC 2 cut(s) 150, 572
TscAI CASTG 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 367, 401
TspRI CASTG 1 cut(s) 41
XbaI TCTAGA 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XspI CTAG 2 cut(s) 116, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.