Prupe.7G004700_v2.0.a1

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0018758
Physical Location & Seq
Reverse (-)
514866 .. 516999
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G004700.1

Sequence Viewer

Length: 669 bp
ATGGAAAAATCTCATTATATGGAGACGGAAGAGAGAAATCAGAGAGCGCCTAAAGCTTCAGAACCAGAATTTTTCTTGCAGTGGGGGAACAGAAAGAGACTCAGATGTGTGAGAGTCAAAGGCTCAGAAATCTCCGAGAGGCTCAATGGTGGCATTTTCAGGAAAATCACATCATCTCGGATCCATCGCTTTGCGGACTCAGCTTCCGAAAAAGAGAACTCTCATCTTCAATCCAATCGCCTTACCATGAATTCTGAGGGGACCATGCTCCGGTCAGGTGCAGGTGAGAACCGGAAGTCATCTTCGCCGGAGAAGGAGGACAGGTACTACACCACAAGAGGATCAGTGGGTGTGGATGAGAATGGGAATGGGAAGGTTATAATGAATGGAAATAATGGAGAGGACCGGGGGCTTGTGTGGCCGAAGCTTTACATCACTTTGTCAAGCAAAGAGAAAGAGGAGGACTTTTTGGCCATGAAGGGTTGCAAACTTCCCCAAAGGCCCAAGAAAAGGGCCAAACTCATCCAACGAAGCTTACTTTTGGTGAGCCCTGGTGCTTGGCTCACTGATATGTGCCAAGAGAGATATGAAGTTAGGGAGAAGAAAAGTTCTAAGAAGAGACCAAGAGGATTGAAGGCTATGGGGAGTTTGGGAAGCGACTCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

223

Amino Acids

25.33

Weight (kDa)

9.85

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018758)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03880
malus_domestica MD12G1004100.v1.1 MD12G1004300.v1.1 MD14G1003000.v1.1
prunus_persica Prupe.7G004700_v2.0.a1 Prupe.7G004700_v2.0.a1 Prupe.7G004700_v2.0.a1
pyrus_communis pycom12g00370 pycom14g00090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AarI CACCTGC 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 272
AciI CCGC 1 cut(s) 194
AclWI GGATC 3 cut(s) 175, 188, 349
AcoI YGGCCR 2 cut(s) 419, 471
AcsI RAATTY 2 cut(s) 68, 250
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 270, 510
AgsI TTSAA 2 cut(s) 230, 634
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 4 cut(s) 56, 203, 427, 534
AluI AGCT 4 cut(s) 56, 203, 427, 534
Alw26I GTCTC 3 cut(s) 17, 91, 613
AlwI GGATC 3 cut(s) 175, 188, 349
AoxI GGCC 4 cut(s) 419, 471, 500, 513
ApoI RAATTY 2 cut(s) 68, 250
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 4 cut(s) 261, 403, 501, 513
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 2 cut(s) 296, 556
AvaII GGWCC 2 cut(s) 261, 403
BalI TGGCCA 1 cut(s) 473
BamHI GGATCC 1 cut(s) 180
BanII GRGCYC 1 cut(s) 551
BccI CCATC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 552
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 3 cut(s) 17, 91, 613
BfoI RGCGCY 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 272
Bme1390I CCNGG 2 cut(s) 407, 552
Bme18I GGWCC 2 cut(s) 261, 403
BmgT120I GGNCC 4 cut(s) 261, 403, 501, 513
BmiI GGNNCC 2 cut(s) 182, 262
BmrFI CCNGG 2 cut(s) 407, 552
BpuMI CCSGG 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 613
BsaJI CCNNGG 2 cut(s) 406, 550
BsaWI WCCGGW 2 cut(s) 270, 291
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 510
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 406, 550
BseGI GGATG 2 cut(s) 361, 522
BseLI CCNNNNNNNGG 2 cut(s) 270, 510
BseMII CTCAG 4 cut(s) 115, 138, 213, 246
BseRI GAGGAG 1 cut(s) 473
BsgI GTGCAG 1 cut(s) 300
BshFI GGCC 4 cut(s) 421, 473, 502, 515
BsiSI CCGG 4 cut(s) 271, 292, 308, 406
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 2 cut(s) 270, 510
BsmAI GTCTC 3 cut(s) 17, 91, 613
BsmBI CGTCTC 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 274
BsnI GGCC 4 cut(s) 421, 473, 502, 515
Bso31I GGTCTC 1 cut(s) 613
Bsp1286I GDGCHC 1 cut(s) 551
Bsp143I GATC 2 cut(s) 180, 341
BspACI CCGC 1 cut(s) 194
BspANI GGCC 4 cut(s) 421, 473, 502, 515
BspCNI CTCAG 4 cut(s) 114, 137, 212, 247
BspLI GGNNCC 2 cut(s) 182, 262
BspMI ACCTGC 1 cut(s) 272
BspPI GGATC 3 cut(s) 175, 188, 349
BspTNI GGTCTC 1 cut(s) 613
BssECI CCNNGG 2 cut(s) 406, 550
BssMI GATC 2 cut(s) 180, 341
Bst2UI CCWGG 1 cut(s) 552
Bst6I CTCTTC 2 cut(s) 24, 611
BstDEI CTNAG 6 cut(s) 101, 124, 199, 255, 612, 661
BstF5I GGATG 2 cut(s) 361, 522
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 2 cut(s) 183, 344
BstMAI GTCTC 3 cut(s) 17, 91, 613
BstMBI GATC 2 cut(s) 180, 341
BstMWI GCNNNNNNNGC 3 cut(s) 53, 200, 418
BstNI CCWGG 1 cut(s) 552
BstSCI CCNGG 2 cut(s) 405, 550
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BsuRI GGCC 4 cut(s) 421, 473, 502, 515
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 361, 522
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 3 cut(s) 86, 351, 564
BveI ACCTGC 1 cut(s) 272
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 4 cut(s) 261, 403, 501, 513
Csp6I GTAC 1 cut(s) 325
CviAII CATG 3 cut(s) 247, 265, 475
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 6 cut(s) 101, 124, 199, 255, 612, 661
DpnI GATC 2 cut(s) 182, 343
DpnII GATC 2 cut(s) 180, 341
EaeI YGGCCR 2 cut(s) 419, 471
Eam1104I CTCTTC 2 cut(s) 24, 611
EarI CTCTTC 2 cut(s) 24, 611
Eco24I GRGCYC 1 cut(s) 551
Eco31I GGTCTC 1 cut(s) 613
Eco47I GGWCC 2 cut(s) 261, 403
Eco57I CTGAAG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 551
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 3 cut(s) 250, 268, 478
FaiI YATR 9 cut(s) 18, 20, 248, 266, 380, 476, 572, 588, 641
FaqI GGGAC 1 cut(s) 274
FatI CATG 3 cut(s) 246, 264, 474
FokI GGATG 2 cut(s) 368, 509
FriOI GRGCYC 1 cut(s) 551
GlaI GCGC 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 4 cut(s) 421, 473, 502, 515
HapII CCGG 4 cut(s) 271, 292, 308, 406
HhaI GCGC 1 cut(s) 49
Hin1II CATG 3 cut(s) 250, 268, 478
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HindIII AAGCTT 3 cut(s) 54, 425, 532
HinfI GANTC 4 cut(s) 99, 114, 197, 659
HpaII CCGG 4 cut(s) 271, 292, 308, 406
HphI GGTGA 2 cut(s) 296, 556
Hpy188I TCNGA 9 cut(s) 42, 61, 104, 127, 136, 180, 208, 256, 664
Hpy188III TCNNGA 1 cut(s) 160
HpyAV CCTTC 4 cut(s) 307, 367, 472, 628
HpyCH4V TGCA 3 cut(s) 79, 281, 486
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 200, 418
HpyF3I CTNAG 6 cut(s) 101, 124, 199, 255, 612, 661
Hsp92II CATG 3 cut(s) 250, 268, 478
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 2 cut(s) 180, 341
LmnI GCTCC 1 cut(s) 273
MalI GATC 2 cut(s) 182, 343
MboI GATC 2 cut(s) 180, 341
MboII GAAGA 5 cut(s) 41, 218, 294, 613, 628
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 551
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 2 cut(s) 68, 250
MluNI TGGCCA 1 cut(s) 473
MlyI GAGTC 4 cut(s) 93, 123, 191, 653
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 8 cut(s) 132, 250, 310, 332, 394, 451, 454, 620
Mox20I TGGCCA 1 cut(s) 473
MscI TGGCCA 1 cut(s) 473
MslI CAYNNNNRTG 1 cut(s) 569
Msp20I TGGCCA 1 cut(s) 473
MspI CCGG 4 cut(s) 271, 292, 308, 406
MspR9I CCNGG 2 cut(s) 407, 552
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 53, 200, 418
NciI CCSGG 1 cut(s) 407
NdeII GATC 2 cut(s) 180, 341
NlaIII CATG 3 cut(s) 250, 268, 478
NlaIV GGNNCC 2 cut(s) 182, 262
PaqCI CACCTGC 1 cut(s) 272
PleI GAGTC 4 cut(s) 93, 122, 191, 653
PpsI GAGTC 4 cut(s) 93, 122, 191, 653
PsiI TTATAA 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 2 cut(s) 182, 262
PspPI GGNCC 4 cut(s) 261, 403, 501, 513
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 569
Sau3AI GATC 2 cut(s) 180, 341
Sau96I GGNCC 4 cut(s) 261, 403, 501, 513
SchI GAGTC 4 cut(s) 93, 123, 191, 653
ScrFI CCNGG 2 cut(s) 407, 552
SduI GDGCHC 1 cut(s) 551
SetI ASST 8 cut(s) 58, 205, 280, 286, 326, 378, 429, 536
SinI GGWCC 2 cut(s) 261, 403
SmiMI CAYNNNNRTG 1 cut(s) 569
Sse9I AATT 2 cut(s) 68, 250
SsiI CCGC 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 405, 550
TasI AATT 2 cut(s) 68, 250
TscAI CASTG 3 cut(s) 86, 351, 571
TspDTI ATGAA 4 cut(s) 263, 398, 491, 603
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 3 cut(s) 86, 351, 571
VpaK11BI GGWCC 2 cut(s) 261, 403
XapI RAATTY 2 cut(s) 68, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.