pycom14g00090

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0018758
Physical Location & Seq
Reverse (-)
56336 .. 58024
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g00090.4

Sequence Viewer

Length: 687 bp
ATGGAAACATCTCATCGTATGGAGACGGAGGAAGAGAGGAATAATCAGAGAGCTTCAGAACCAGAGTTTTTCCTGCAGTGGGGGAACAGAAAGAGGCTCAGATGTGTGAGAGTCAAGGGCTCGGAAATCTCAGCCGAGAGATTCAAATTCAATGGTGGCATGTGCAGGACAATCACATCGTCTCGGATTCATCGCTTTGCGGTCTCCACTTCCGGAAAAGACATCTCTGGTTTTCAATCCAATCGCCTCACCAGGAATTCTGACGGGGCTCTGCTCCGGTGTAGCGCAGGTGAGAACCGAAAGTCATCTTCACCGGAGAAGGAGGAAAGGTACTACACCAGAAGAGGATCTGTGGGTGTGGATGAGAGTTGTAATGGGAATGGGAATGGGAAGGTTATGATGGACGGAAACAATGTTGAGGACCGGGGGCTTGTTTGGCCAAAGCTGTACATCACTTTGTCGAGCAAAGAGAAAGAAGAGGACTTTTTGGCCATGAAGGGTTGTAAACTTCCCCAAAGACCCAAGAAAAGGGCCAAACTCATCCAAAGAAGCTTACTTCTGGTGAGTCCCGGTGCATGGCTGACTGATATGTGCCAAGAGAGATATGAAGTTAGGGAGAAGAAAAGTACTAAGAAGAGATCAAGAGGATTGAAGGCTATGGGGAGCCTGGAAACCGAGTCGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

229

Amino Acids

26.06

Weight (kDa)

9.76

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018758)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03880
malus_domestica MD12G1004100.v1.1 MD12G1004300.v1.1 MD14G1003000.v1.1
prunus_persica Prupe.7G004700_v2.0.a1 Prupe.7G004700_v2.0.a1 Prupe.7G004700_v2.0.a1
pyrus_communis pycom12g00370 pycom14g00090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 278
Acc36I ACCTGC 1 cut(s) 278
AccIII TCCGGA 1 cut(s) 212
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 2 cut(s) 437, 489
AcsI RAATTY 2 cut(s) 146, 256
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 3 cut(s) 332, 449, 628
AfiI CCNNNNNNNGG 3 cut(s) 79, 528, 576
AgsI TTSAA 4 cut(s) 145, 151, 236, 652
AjnI CCWGG 2 cut(s) 251, 666
AluBI AGCT 3 cut(s) 53, 445, 552
AluI AGCT 3 cut(s) 53, 445, 552
Alw26I GTCTC 3 cut(s) 17, 186, 208
AlwI GGATC 1 cut(s) 355
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 3 cut(s) 437, 489, 531
ApoI RAATTY 2 cut(s) 146, 256
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 421, 531
AsuC2I CCSGG 2 cut(s) 425, 570
AsuHPI GGTGA 4 cut(s) 241, 302, 303, 574
AvaII GGWCC 1 cut(s) 421
BalI TGGCCA 2 cut(s) 439, 491
BanII GRGCYC 2 cut(s) 122, 271
BccI CCATC 1 cut(s) 394
BciT130I CCWGG 2 cut(s) 253, 668
BcnI CCSGG 2 cut(s) 425, 570
BcoDI GTCTC 3 cut(s) 17, 186, 208
BfmI CTRYAG 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 278
BmcAI AGTACT 1 cut(s) 628
Bme1390I CCNGG 4 cut(s) 253, 425, 570, 668
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 2 cut(s) 421, 531
BmiI GGNNCC 1 cut(s) 665
BmrFI CCNGG 4 cut(s) 253, 425, 570, 668
BpuMI CCSGG 2 cut(s) 425, 570
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 424
BsaWI WCCGGW 3 cut(s) 212, 276, 313
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 528, 576
BseAI TCCGGA 1 cut(s) 212
BseBI CCWGG 2 cut(s) 253, 668
BseDI CCNNGG 1 cut(s) 424
BseGI GGATG 2 cut(s) 367, 540
BseLI CCNNNNNNNGG 3 cut(s) 79, 528, 576
BseMII CTCAG 2 cut(s) 112, 144
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 3 cut(s) 439, 491, 533
BsiSI CCGG 5 cut(s) 213, 277, 314, 424, 570
BslFI GGGAC 1 cut(s) 552
BslI CCNNNNNNNGG 3 cut(s) 79, 528, 576
BsmAI GTCTC 3 cut(s) 17, 186, 208
BsmBI CGTCTC 2 cut(s) 17, 186
BsmFI GGGAC 1 cut(s) 552
BsnI GGCC 3 cut(s) 439, 491, 533
Bso31I GGTCTC 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 122, 271
Bsp13I TCCGGA 1 cut(s) 212
Bsp1407I TGTACA 1 cut(s) 447
Bsp143I GATC 2 cut(s) 347, 638
BspACI CCGC 1 cut(s) 200
BspANI GGCC 3 cut(s) 439, 491, 533
BspCNI CTCAG 2 cut(s) 111, 143
BspEI TCCGGA 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 665
BspMAI CTGCAG 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 278
BspPI GGATC 1 cut(s) 355
BspTNI GGTCTC 1 cut(s) 208
BsrGI TGTACA 1 cut(s) 447
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 2 cut(s) 347, 638
Bst2UI CCWGG 2 cut(s) 253, 668
Bst6I CTCTTC 4 cut(s) 27, 337, 471, 629
BstAUI TGTACA 1 cut(s) 447
BstDEI CTNAG 3 cut(s) 98, 130, 630
BstF5I GGATG 2 cut(s) 367, 540
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 2 cut(s) 350, 641
BstMAI GTCTC 3 cut(s) 17, 186, 208
BstMBI GATC 2 cut(s) 347, 638
BstMWI GCNNNNNNNGC 1 cut(s) 436
BstNI CCWGG 2 cut(s) 253, 668
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 4 cut(s) 251, 423, 568, 666
BstSFI CTRYAG 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuRI GGCC 3 cut(s) 439, 491, 533
BtgZI GCGATG 1 cut(s) 176
BtsCI GGATG 2 cut(s) 367, 540
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 83
BveI ACCTGC 1 cut(s) 278
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 421, 531
Csp6I GTAC 3 cut(s) 331, 448, 627
CviAII CATG 3 cut(s) 160, 493, 576
CviQI GTAC 3 cut(s) 331, 448, 627
DdeI CTNAG 3 cut(s) 98, 130, 630
DpnI GATC 2 cut(s) 349, 640
DpnII GATC 2 cut(s) 347, 638
EaeI YGGCCR 2 cut(s) 437, 489
Eam1104I CTCTTC 4 cut(s) 27, 337, 471, 629
EarI CTCTTC 4 cut(s) 27, 337, 471, 629
Eco24I GRGCYC 2 cut(s) 122, 271
Eco31I GGTCTC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 251, 666
EcoT38I GRGCYC 2 cut(s) 122, 271
Esp3I CGTCTC 2 cut(s) 17, 186
FaeI CATG 3 cut(s) 163, 496, 579
FaiI YATR 8 cut(s) 20, 161, 398, 494, 577, 590, 606, 659
FaqI GGGAC 1 cut(s) 552
FatI CATG 3 cut(s) 159, 492, 575
FokI GGATG 2 cut(s) 374, 527
FriOI GRGCYC 2 cut(s) 122, 271
GlaI GCGC 1 cut(s) 286
HaeIII GGCC 3 cut(s) 439, 491, 533
HapII CCGG 5 cut(s) 213, 277, 314, 424, 570
HhaI GCGC 1 cut(s) 287
Hin1II CATG 3 cut(s) 163, 496, 579
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 550
HinfI GANTC 5 cut(s) 111, 141, 187, 565, 677
HpaII CCGG 5 cut(s) 213, 277, 314, 424, 570
HphI GGTGA 4 cut(s) 241, 302, 303, 574
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 7 cut(s) 48, 58, 101, 124, 186, 262, 682
Hpy188III TCNNGA 2 cut(s) 213, 642
Hpy8I GTNNAC 1 cut(s) 506
HpyAV CCTTC 4 cut(s) 313, 385, 490, 646
HpyCH4V TGCA 3 cut(s) 76, 165, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 436
HpyF3I CTNAG 3 cut(s) 98, 130, 630
Hsp92II CATG 3 cut(s) 163, 496, 579
HspAI GCGC 1 cut(s) 285
Kpn2I TCCGGA 1 cut(s) 212
Kzo9I GATC 2 cut(s) 347, 638
LmnI GCTCC 2 cut(s) 279, 663
MalI GATC 2 cut(s) 349, 640
MboI GATC 2 cut(s) 347, 638
MboII GAAGA 6 cut(s) 44, 300, 354, 488, 631, 646
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 122, 271
MlsI TGGCCA 2 cut(s) 439, 491
MluCI AATT 2 cut(s) 146, 256
MluNI TGGCCA 2 cut(s) 439, 491
MlyI GAGTC 3 cut(s) 120, 574, 686
MmeI TCCRAC 1 cut(s) 660
MnlI CCTC 9 cut(s) 22, 30, 87, 257, 316, 338, 412, 472, 638
Mox20I TGGCCA 2 cut(s) 439, 491
MroI TCCGGA 1 cut(s) 212
MscI TGGCCA 2 cut(s) 439, 491
Msp20I TGGCCA 2 cut(s) 439, 491
MspI CCGG 5 cut(s) 213, 277, 314, 424, 570
MspR9I CCNGG 4 cut(s) 253, 425, 570, 668
MvaI CCWGG 2 cut(s) 253, 668
MwoI GCNNNNNNNGC 1 cut(s) 436
NciI CCSGG 2 cut(s) 425, 570
NdeII GATC 2 cut(s) 347, 638
NlaIII CATG 3 cut(s) 163, 496, 579
NlaIV GGNNCC 1 cut(s) 665
NmeAIII GCCGAG 1 cut(s) 160
NspI RCATGY 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 278
PfeI GAWTC 2 cut(s) 141, 187
PleI GAGTC 3 cut(s) 119, 573, 685
PpsI GAGTC 3 cut(s) 119, 573, 685
Psp6I CCWGG 2 cut(s) 251, 666
PspGI CCWGG 2 cut(s) 251, 666
PspN4I GGNNCC 1 cut(s) 665
PspPI GGNCC 2 cut(s) 421, 531
PstI CTGCAG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 3 cut(s) 332, 449, 628
RsaNI GTAC 3 cut(s) 331, 448, 627
Sau3AI GATC 2 cut(s) 347, 638
Sau96I GGNCC 2 cut(s) 421, 531
ScaI AGTACT 1 cut(s) 628
SchI GAGTC 3 cut(s) 120, 574, 686
ScrFI CCNGG 4 cut(s) 253, 425, 570, 668
SduI GDGCHC 2 cut(s) 122, 271
SetI ASST 6 cut(s) 55, 292, 332, 396, 447, 554
SfcI CTRYAG 1 cut(s) 74
SinI GGWCC 1 cut(s) 421
Sse9I AATT 2 cut(s) 146, 256
SsiI CCGC 1 cut(s) 200
StyD4I CCNGG 4 cut(s) 251, 423, 568, 666
TaqI TCGA 1 cut(s) 461
TasI AATT 2 cut(s) 146, 256
TatI WGTACW 2 cut(s) 447, 626
TfiI GAWTC 2 cut(s) 141, 187
TscAI CASTG 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 179, 509, 621
TspGWI ACGGA 2 cut(s) 41, 420
TspRI CASTG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 2 cut(s) 146, 256
XceI RCATGY 1 cut(s) 163
ZrmI AGTACT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.