AT3G05410

PsbP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012050
Physical Location & Seq
Forward (+)
1554673 .. 1561535
6863 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05410.1

Sequence Viewer

Length: 534 bp
ATGTCTCTGAAACCTTATTTCTCTCTACTATACTCATCTCCCACTAATGTAAAACTTTCCAACTTCTTAATCGCTCAACAACCCTCCGGTGACCTGAAAACTACCCCGGCCGAGGAGTTTTCTCCACTGGTTGAGAAATTCAACCGACGGCTTCTTCTGGGTGTAGGATCGTCCTCTGTTCTTGCGATTGGTGCGAATTTCGGAGGAACCACGAGTTTTATACTCGGTTTATCGCCAGGGATAGGCCGGAATCTAAAACTCGACGTCATTTATCCGATTGGAGGATATAGCAGATGTATCGATACGGTTGAAGGATTCGAATTTATATATCCGGCTACGTGGGTTGGAGACCAGACGCTTTTGTATAGAGCGGCGGAGAAGTCAGAACGGGAGAATTCGCTAGACCTTCCTCCGGCAAGAAACAGTCGCCGGAAAAACGTTAATGAACCGGTTGTTGCATTTGGACCGCCCGGTTCGACCGGTGAGCTTAATGTCAGTGTTATCGTTTCCCCTGTCTCACCCAGTTTCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

177

Amino Acids

19.09

Weight (kDa)

7.8

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012050)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05410 AT3G05410 AT3G05410
fragaria_vesca FvH4_6g06280
malus_domestica MD04G1202900.v1.1 MD12G1216700.v1.1
prunus_persica Prupe.6G323000_v2.0.a1
pyrus_communis pycom04g17920 pycom12g20220
rosa_chinensis RchiOBHm_Chr3g0455321
rosa_laevigata RLG00000025370
rosa_multiflora Rmu_sc0002169.1_g000042
rosa_roxburghii Rroxscaffold_6G00424380
rosa_rugosa Rorug03G0006200.1
rosa_samantha Rh3AG066000 Rh3BG068100 Rh3CG066500 Rh3DG068100
rosa_wichuraiana Rw3G005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
AccBSI CCGCTC 1 cut(s) 371
AciI CCGC 3 cut(s) 371, 374, 467
AclI AACGTT 1 cut(s) 438
AclWI GGATC 1 cut(s) 175
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 4 cut(s) 137, 196, 320, 394
AcyI GRCGYC 1 cut(s) 264
AfiI CCNNNNNNNGG 4 cut(s) 112, 242, 281, 412
AgeI ACCGGT 2 cut(s) 448, 479
AgsI TTSAA 2 cut(s) 142, 311
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 1 cut(s) 487
AluI AGCT 1 cut(s) 487
Alw26I GTCTC 3 cut(s) 9, 342, 520
AlwI GGATC 1 cut(s) 175
AoxI GGCC 2 cut(s) 108, 244
ApoI RAATTY 4 cut(s) 137, 196, 320, 394
AsiGI ACCGGT 2 cut(s) 448, 479
AspS9I GGNCC 1 cut(s) 464
AsuC2I CCSGG 2 cut(s) 107, 471
AsuHPI GGTGA 3 cut(s) 101, 494, 510
AsuII TTCGAA 1 cut(s) 318
AvaII GGWCC 1 cut(s) 464
BauI CACGAG 1 cut(s) 211
BceAI ACGGC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 280, 314
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 2 cut(s) 107, 471
BcoDI GTCTC 3 cut(s) 9, 342, 520
BfaI CTAG 1 cut(s) 401
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 3 cut(s) 107, 237, 471
Bme18I GGWCC 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 3 cut(s) 107, 237, 471
BmrI ACTGGG 1 cut(s) 516
BmuI ACTGGG 1 cut(s) 516
Bpu14I TTCGAA 1 cut(s) 318
BpuMI CCSGG 2 cut(s) 107, 471
Bsa29I ATCGAT 1 cut(s) 300
BsaAI YACGTR 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 3 cut(s) 105, 111, 236
BsaWI WCCGGW 3 cut(s) 86, 448, 479
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 242, 281, 412
Bse118I RCCGGY 2 cut(s) 448, 479
Bse1I ACTGG 2 cut(s) 132, 522
BseBI CCWGG 1 cut(s) 237
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 105, 111, 236
BseLI CCNNNNNNNGG 4 cut(s) 112, 242, 281, 412
BseNI ACTGG 2 cut(s) 132, 522
BseRI GAGGAG 1 cut(s) 128
BseX3I CGGCCG 1 cut(s) 108
Bsh1285I CGRYCG 2 cut(s) 111, 480
BshFI GGCC 2 cut(s) 110, 246
BshTI ACCGGT 2 cut(s) 448, 479
BshVI ATCGAT 1 cut(s) 300
BsiEI CGRYCG 2 cut(s) 111, 480
BsiSI CCGG 9 cut(s) 87, 107, 247, 332, 413, 430, 449, 471, 480
BslI CCNNNNNNNGG 4 cut(s) 112, 242, 281, 412
BsmAI GTCTC 3 cut(s) 9, 342, 520
BsnI GGCC 2 cut(s) 110, 246
Bso31I GGTCTC 1 cut(s) 342
Bsp119I TTCGAA 1 cut(s) 318
Bsp143I GATC 1 cut(s) 167
BspACI CCGC 3 cut(s) 371, 374, 467
BspANI GGCC 2 cut(s) 110, 246
BspDI ATCGAT 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 342
BsrBI CCGCTC 1 cut(s) 371
BsrFI RCCGGY 2 cut(s) 448, 479
BsrI ACTGG 2 cut(s) 132, 522
BssAI RCCGGY 2 cut(s) 448, 479
BssECI CCNNGG 3 cut(s) 105, 111, 236
BssMI GATC 1 cut(s) 167
BssNI GRCGYC 1 cut(s) 264
BssSI CACGAG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 307, 425
BstACI GRCGYC 1 cut(s) 264
BstBAI YACGTR 1 cut(s) 339
BstBI TTCGAA 1 cut(s) 318
BstEII GGTNACC 1 cut(s) 89
BstKTI GATC 1 cut(s) 170
BstMAI GTCTC 3 cut(s) 9, 342, 520
BstMBI GATC 1 cut(s) 167
BstMCI CGRYCG 2 cut(s) 111, 480
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 237
BstPI GGTNACC 1 cut(s) 89
BstSCI CCNGG 3 cut(s) 105, 235, 469
BstZI CGGCCG 1 cut(s) 108
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 2 cut(s) 110, 246
BsuTUI ATCGAT 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 125, 502
Cfr10I RCCGGY 2 cut(s) 448, 479
Cfr13I GGNCC 1 cut(s) 464
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 1 cut(s) 364
CspAI ACCGGT 2 cut(s) 448, 479
CviJI RGCY 5 cut(s) 110, 151, 246, 335, 487
CviKI_1 RGCY 5 cut(s) 110, 151, 246, 335, 487
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 108
EagI CGGCCG 1 cut(s) 108
EciI GGCGGA 1 cut(s) 389
EclXI CGGCCG 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 464
Eco52I CGGCCG 1 cut(s) 108
Eco91I GGTNACC 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 235
FaiI YATR 6 cut(s) 31, 221, 288, 326, 328, 366
Fnu4HI GCNGC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 401
GluI GCNGC 1 cut(s) 372
HaeIII GGCC 2 cut(s) 110, 246
HapII CCGG 9 cut(s) 87, 107, 247, 332, 413, 430, 449, 471, 480
HgaI GACGC 1 cut(s) 364
Hin1I GRCGYC 1 cut(s) 264
HinfI GANTC 2 cut(s) 250, 315
HpaII CCGG 9 cut(s) 87, 107, 247, 332, 413, 430, 449, 471, 480
HphI GGTGA 3 cut(s) 101, 494, 510
Hpy188I TCNGA 4 cut(s) 9, 203, 276, 385
Hpy99I CGWCG 2 cut(s) 150, 266
HpyAV CCTTC 2 cut(s) 305, 416
HpyCH4III ACNGT 2 cut(s) 307, 425
HpyCH4IV ACGT 3 cut(s) 264, 338, 438
HpyCH4V TGCA 1 cut(s) 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpySE526I ACGT 3 cut(s) 264, 338, 438
Hsp92I GRCGYC 1 cut(s) 264
Kzo9I GATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 401
MaeII ACGT 3 cut(s) 264, 338, 438
MaeIII GTNAC 1 cut(s) 89
MalI GATC 1 cut(s) 169
MbiI CCGCTC 1 cut(s) 371
MboI GATC 1 cut(s) 167
MboII GAAGA 1 cut(s) 146
MluCI AATT 4 cut(s) 137, 196, 320, 394
MmeI TCCRAC 2 cut(s) 84, 325
MnlI CCTC 6 cut(s) 94, 106, 184, 197, 275, 420
MseI TTAA 3 cut(s) 68, 441, 489
MspI CCGG 9 cut(s) 87, 107, 247, 332, 413, 430, 449, 471, 480
MspR9I CCNGG 3 cut(s) 107, 237, 471
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 2 cut(s) 107, 471
NdeII GATC 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 208
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 89
NspV TTCGAA 1 cut(s) 318
PfeI GAWTC 2 cut(s) 250, 315
PinAI ACCGGT 2 cut(s) 448, 479
PkrI GCNGC 1 cut(s) 373
Ppu21I YACGTR 1 cut(s) 339
Psp1406I AACGTT 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 235
PspEI GGTNACC 1 cut(s) 89
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 464
SaqAI TTAA 3 cut(s) 68, 441, 489
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 1 cut(s) 167
Sau96I GGNCC 1 cut(s) 464
ScrFI CCNGG 3 cut(s) 107, 237, 471
SetI ASST 7 cut(s) 16, 96, 267, 341, 408, 441, 489
SfuI TTCGAA 1 cut(s) 318
SinI GGWCC 1 cut(s) 464
Sse9I AATT 4 cut(s) 137, 196, 320, 394
SsiI CCGC 3 cut(s) 371, 374, 467
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 3 cut(s) 105, 235, 469
TaaI ACNGT 2 cut(s) 307, 425
TaiI ACGT 3 cut(s) 267, 341, 441
TaqI TCGA 4 cut(s) 261, 300, 318, 476
TasI AATT 4 cut(s) 137, 196, 320, 394
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 250, 315
Tru1I TTAA 3 cut(s) 68, 441, 489
Tru9I TTAA 3 cut(s) 68, 441, 489
TscAI CASTG 2 cut(s) 132, 502
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 459
TspRI CASTG 2 cut(s) 132, 502
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 4 cut(s) 137, 196, 320, 394
XspI CTAG 1 cut(s) 401
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.