Rh3BG068100

PsbP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012050
Physical Location & Seq
Forward (+)
4606246 .. 4606938
693 bp
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UTR
Exon/CDS
Intron
Rh3BG068100.1

Sequence Viewer

Length: 579 bp
ATGCCGGCCTTGCCACACTACTTGTACGCATGCAAATACGCTTGCTTCAACCGGAAATGCGTGAAACAATTCTCCGGCAGCCGGAAAGCCGCTTTGCAAGTGGTATCAATCAGGGCAGAGAGGTCTCCGGCGGAGCAGTTTGCACCGCTGGCATCCAGGTTCGGGCGGCGGCTCCTAGTTGGTTTGGGGTCAGCTTCTGTGGTTGCTCTTGGTGCTAACTTTGTAGGGATTACGAGTTTCCTTCTTGGGTTGTCGCCAGAAAGTAGTAGGAATCTGAAGCTGGATGTGCTATATCCTATAGGAGGGTACAGTAGGTGTATTGACACAAATGAGGGATTTGAGTTCATATACCCAGTAAATTGGGTTGGTGATCAGACATTGTTGTATAGAGCAGCTGAGAAAAGAGAGTTTGAAAGATCACTTGATCCCCCTCCTTTGAACATTAATAGCAAATCCGGTGATGGAATTGGACGGCGTCGAAATGTCAATGAACCTGTTGTTGCATTTGGACCGCCTGGCACAAGTGGCGAGCTCAATGTTAGTGTCATTGTCTCACCAGTATCTCTTGATTTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

192

Amino Acids

20.96

Weight (kDa)

9.41

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012050)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05410 AT3G05410 AT3G05410
fragaria_vesca FvH4_6g06280
malus_domestica MD04G1202900.v1.1 MD12G1216700.v1.1
prunus_persica Prupe.6G323000_v2.0.a1
pyrus_communis pycom04g17920 pycom12g20220
rosa_chinensis RchiOBHm_Chr3g0455321
rosa_laevigata RLG00000025370
rosa_multiflora Rmu_sc0002169.1_g000042
rosa_roxburghii Rroxscaffold_6G00424380
rosa_rugosa Rorug03G0006200.1
rosa_samantha Rh3AG066000 Rh3BG068100 Rh3CG066500 Rh3DG068100
rosa_wichuraiana Rw3G005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 90, 131, 146, 166, 169, 512
AclWI GGATC 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 475
AfaI GTAC 2 cut(s) 26, 308
AfiI CCNNNNNNNGG 3 cut(s) 81, 162, 302
AgsI TTSAA 4 cut(s) 49, 413, 439, 574
AjnI CCWGG 2 cut(s) 155, 514
AluBI AGCT 4 cut(s) 194, 280, 395, 532
AluI AGCT 4 cut(s) 194, 280, 395, 532
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 2 cut(s) 129, 556
AlwI GGATC 1 cut(s) 419
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 78, 392
AseI ATTAAT 1 cut(s) 444
Asp700I GAANNNNTTC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 509
AsuHPI GGTGA 3 cut(s) 380, 470, 546
AvaII GGWCC 1 cut(s) 509
BanII GRGCYC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 90, 404
BccI CCATC 1 cut(s) 455
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 2 cut(s) 157, 516
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 2 cut(s) 129, 556
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 297
BisI GCNGC 5 cut(s) 79, 90, 167, 170, 393
BlsI GCNGC 5 cut(s) 80, 91, 168, 171, 394
Bme1390I CCNGG 2 cut(s) 157, 516
Bme18I GGWCC 1 cut(s) 509
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 2 cut(s) 157, 516
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 475
BsaI GGTCTC 1 cut(s) 129
BsaWI WCCGGW 2 cut(s) 51, 455
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 162, 302
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 2 cut(s) 353, 557
BseBI CCWGG 2 cut(s) 157, 516
BseGI GGATG 2 cut(s) 152, 289
BseLI CCNNNNNNNGG 3 cut(s) 81, 162, 302
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 2 cut(s) 353, 557
BseXI GCAGC 2 cut(s) 90, 404
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 6 cut(s) 5, 52, 75, 82, 128, 456
BslI CCNNNNNNNGG 3 cut(s) 81, 162, 302
BsmAI GTCTC 2 cut(s) 129, 556
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 3 cut(s) 370, 416, 424
BspACI CCGC 6 cut(s) 90, 131, 146, 166, 169, 512
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 173
BspPI GGATC 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 2 cut(s) 353, 557
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 3 cut(s) 370, 416, 424
BssNI GRCGYC 1 cut(s) 475
Bst2UI CCWGG 2 cut(s) 157, 516
Bst4CI ACNGT 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 475
BstC8I GCNNGC 5 cut(s) 6, 31, 43, 150, 530
BstDEI CTNAG 1 cut(s) 396
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 152, 289
BstKTI GATC 3 cut(s) 373, 419, 427
BstMAI GTCTC 2 cut(s) 129, 556
BstMBI GATC 3 cut(s) 370, 416, 424
BstMWI GCNNNNNNNGC 5 cut(s) 10, 149, 212, 286, 525
BstNI CCWGG 2 cut(s) 157, 516
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 155, 514
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 90, 404
BstXI CCANNNNNNTGG 1 cut(s) 360
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 2 cut(s) 152, 289
Cac8I GCNNGC 5 cut(s) 6, 31, 43, 150, 530
CaiI CAGNNNCTG 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 509
CseI GACGC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 25, 307
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 1 cut(s) 30
CviJI RGCY 8 cut(s) 8, 81, 89, 172, 194, 280, 395, 532
CviKI_1 RGCY 8 cut(s) 8, 81, 89, 172, 194, 280, 395, 532
CviQI GTAC 2 cut(s) 25, 307
DdeI CTNAG 1 cut(s) 396
DpnI GATC 3 cut(s) 372, 418, 426
DpnII GATC 3 cut(s) 370, 416, 424
EciI GGCGGA 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 534
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 509
Eco53kI GAGCTC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 532
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 155, 514
EcoT38I GRGCYC 1 cut(s) 534
FaeI CATG 1 cut(s) 33
FaiI YATR 6 cut(s) 31, 292, 299, 347, 349, 387
FatI CATG 1 cut(s) 29
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 5 cut(s) 79, 90, 167, 170, 393
FokI GGATG 2 cut(s) 139, 296
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 5 cut(s) 79, 90, 167, 170, 393
FspBI CTAG 1 cut(s) 176
GluI GCNGC 5 cut(s) 79, 90, 167, 170, 393
HaeIII GGCC 1 cut(s) 8
HapII CCGG 6 cut(s) 5, 52, 75, 82, 128, 456
HgaI GACGC 1 cut(s) 464
Hin1I GRCGYC 1 cut(s) 475
Hin1II CATG 1 cut(s) 33
HinfI GANTC 1 cut(s) 271
HpaII CCGG 6 cut(s) 5, 52, 75, 82, 128, 456
HphI GGTGA 3 cut(s) 380, 470, 546
Hpy188I TCNGA 2 cut(s) 276, 375
Hpy188III TCNNGA 1 cut(s) 566
Hpy99I CGWCG 1 cut(s) 480
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 4 cut(s) 33, 97, 143, 503
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 149, 212, 286, 525
HpyF3I CTNAG 1 cut(s) 396
Hsp92I GRCGYC 1 cut(s) 475
Hsp92II CATG 1 cut(s) 33
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 3 cut(s) 370, 416, 424
LmnI GCTCC 2 cut(s) 133, 177
Lsp1109I GCAGC 2 cut(s) 90, 404
LweI GCATC 1 cut(s) 161
MaeI CTAG 1 cut(s) 176
MalI GATC 3 cut(s) 372, 418, 426
MboI GATC 3 cut(s) 370, 416, 424
MhlI GDGCHC 1 cut(s) 534
MluCI AATT 3 cut(s) 68, 358, 465
MnlI CCTC 4 cut(s) 114, 296, 325, 441
MroNI GCCGGC 1 cut(s) 4
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 1 cut(s) 444
MspA1I CMGCKG 2 cut(s) 148, 395
MspI CCGG 6 cut(s) 5, 52, 75, 82, 128, 456
MspR9I CCNGG 2 cut(s) 157, 516
MvaI CCWGG 2 cut(s) 157, 516
MwoI GCNNNNNNNGC 5 cut(s) 10, 149, 212, 286, 525
NaeI GCCGGC 1 cut(s) 6
NdeII GATC 3 cut(s) 370, 416, 424
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 1 cut(s) 173
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 271
PflFI GACNNNGTC 1 cut(s) 474
PkrI GCNGC 5 cut(s) 80, 91, 168, 171, 394
PshBI ATTAAT 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 534
Psp6I CCWGG 2 cut(s) 155, 514
PspGI CCWGG 2 cut(s) 155, 514
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 1 cut(s) 509
PstNI CAGNNNCTG 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 474
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 26, 308
RsaNI GTAC 2 cut(s) 25, 307
SacI GAGCTC 1 cut(s) 534
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 5 cut(s) 79, 90, 167, 170, 393
Sau3AI GATC 3 cut(s) 370, 416, 424
Sau96I GGNCC 1 cut(s) 509
ScrFI CCNGG 2 cut(s) 157, 516
SduI GDGCHC 1 cut(s) 534
SetI ASST 8 cut(s) 125, 161, 196, 282, 317, 397, 496, 534
SfaNI GCATC 1 cut(s) 161
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 1 cut(s) 509
SphI GCATGC 1 cut(s) 33
Sse9I AATT 3 cut(s) 68, 358, 465
SsiI CCGC 6 cut(s) 90, 131, 146, 166, 169, 512
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 2 cut(s) 155, 514
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 478
TasI AATT 3 cut(s) 68, 358, 465
TauI GCSGC 3 cut(s) 92, 169, 172
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TseI GCWGC 2 cut(s) 78, 392
TspDTI ATGAA 2 cut(s) 334, 504
Tth111I GACNNNGTC 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 509
VspI ATTAAT 1 cut(s) 444
XagI CCTNNNNNAGG 1 cut(s) 300
XceI RCATGY 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.