Rh3AG066000

PsbP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0012050
Physical Location & Seq
Forward (+)
4606246 .. 4607331
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG066000.1

Sequence Viewer

Length: 888 bp
ATGCCGGCCTTGCCACACTACTTGTACGCATGCAAATACGCTTGCTTCAACCGGAAATGCGTGAAACAATTCTCCGGCAGCCGGAAAGCCGCTTTGCAAGTGGTATCAATCAGGGCAGAGAGGTCTCCGGCGGAGCAGTTTGCACCGCTGGCATCCAGGTTCGGGCGGCGGCTCCTAGTTGGTTTGGGGTCAGCTTCTGTGGTTGCTCTTGGTGCTAACTTTGTAGGGATTACGAGTTTCCTTCTTGGGTTGTCGCCAGAAAGTAGTAGGAATCTGAAGCTGGATGTGCTATATCCTATAGGAGGGTACAGTAGGTGTATTGACACAAATGAGGGATTTGAGTTCATATACCCAGTAAATTGGGTTGGTGATCAGACATTGTTGTATAGAGCAGCTGAGAAAAGAGAGTTTGAAAGATCACTTGATCCCCCTCCTTTGAACATTAATAGCAAATCCGGTGATGGAATTGGACGGCGTCGAAATGTCAATGAACCTGTTGTTGCATTTGGACCGCCTGGCACAAGTGGCGAGCTCAATGTTAGTGTCATTGTCTCACCAGTATCTCTTGATTTCAAAATTGAAGCATTTGGAGGACCAAAAGAAGTGGGAGAAGCTGTGGTTCGGACGATTACAGGAGCTGGCAAACGCCCCGATGTGAAGGGAACTTTGGTAAAATCAAATTTGAGAGAGGACAGCTTAAGAAATGTGAAATACTATGAGCTTGAATTCAGAGTCGAGAGCCCTTTGTTTCATCGTCATAACATTGCTGTCTGTTGCGTTCGTGGTGGACGGTTATTCACTCTGAATGCTCAGGCACCGGAATCGAAATGGCCTGAAGTGAAGTCTGATTTCCAAACGATTGCTGAATCATTTAGTCTCAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

295

Amino Acids

32.42

Weight (kDa)

9.3

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 102 - 292 2.7e-28 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012050)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05410 AT3G05410 AT3G05410
fragaria_vesca FvH4_6g06280
malus_domestica MD04G1202900.v1.1 MD12G1216700.v1.1
prunus_persica Prupe.6G323000_v2.0.a1
pyrus_communis pycom04g17920 pycom12g20220
rosa_chinensis RchiOBHm_Chr3g0455321
rosa_laevigata RLG00000025370
rosa_multiflora Rmu_sc0002169.1_g000042
rosa_roxburghii Rroxscaffold_6G00424380
rosa_rugosa Rorug03G0006200.1
rosa_samantha Rh3AG066000 Rh3BG068100 Rh3CG066500 Rh3DG068100
rosa_wichuraiana Rw3G005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 814
AciI CCGC 6 cut(s) 90, 131, 146, 166, 169, 512
AclWI GGATC 1 cut(s) 419
AcsI RAATTY 2 cut(s) 679, 725
AcuI CTGAAG 2 cut(s) 296, 855
AcyI GRCGYC 1 cut(s) 475
AfaI GTAC 2 cut(s) 26, 308
AfiI CCNNNNNNNGG 3 cut(s) 81, 162, 302
AflII CTTAAG 1 cut(s) 697
AgsI TTSAA 6 cut(s) 49, 413, 439, 574, 581, 725
AjnI CCWGG 2 cut(s) 155, 514
AjuI GAANNNNNNNTTGG 2 cut(s) 650, 682
AluBI AGCT 8 cut(s) 194, 280, 395, 532, 614, 638, 696, 721
AluI AGCT 8 cut(s) 194, 280, 395, 532, 614, 638, 696, 721
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 3 cut(s) 129, 556, 881
AlwI GGATC 1 cut(s) 419
AlwNI CAGNNNCTG 2 cut(s) 197, 638
AoxI GGCC 2 cut(s) 6, 830
ApeKI GCWGC 2 cut(s) 78, 392
ApoI RAATTY 2 cut(s) 679, 725
AseI ATTAAT 1 cut(s) 444
Asp700I GAANNNNTTC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 509, 593
AsuHPI GGTGA 3 cut(s) 380, 470, 546
AvaII GGWCC 2 cut(s) 509, 593
BanI GGYRCC 1 cut(s) 814
BanII GRGCYC 2 cut(s) 534, 743
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 90, 404
BccI CCATC 1 cut(s) 455
BceAI ACGGC 1 cut(s) 488
BcgI CGANNNNNNTGC 2 cut(s) 804, 838
BciT130I CCWGG 2 cut(s) 157, 516
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 3 cut(s) 129, 556, 881
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 297
BfrI CTTAAG 1 cut(s) 697
BisI GCNGC 5 cut(s) 79, 90, 167, 170, 393
BlsI GCNGC 5 cut(s) 80, 91, 168, 171, 394
Bme1390I CCNGG 2 cut(s) 157, 516
Bme18I GGWCC 2 cut(s) 509, 593
BmgT120I GGNCC 2 cut(s) 509, 593
BmiI GGNNCC 2 cut(s) 173, 816
BmrFI CCNGG 2 cut(s) 157, 516
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 810
BsaHI GRCGYC 1 cut(s) 475
BsaI GGTCTC 1 cut(s) 129
BsaWI WCCGGW 3 cut(s) 51, 455, 817
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 162, 302
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 2 cut(s) 353, 557
Bse3DI GCAATG 1 cut(s) 762
BseBI CCWGG 2 cut(s) 157, 516
BseGI GGATG 2 cut(s) 152, 289
BseLI CCNNNNNNNGG 3 cut(s) 81, 162, 302
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 2 cut(s) 387, 824
BseNI ACTGG 2 cut(s) 353, 557
BseXI GCAGC 2 cut(s) 90, 404
BshFI GGCC 2 cut(s) 8, 832
BshNI GGYRCC 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 7 cut(s) 5, 52, 75, 82, 128, 456, 818
BslI CCNNNNNNNGG 3 cut(s) 81, 162, 302
BsmAI GTCTC 3 cut(s) 129, 556, 881
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 2 cut(s) 8, 832
Bso31I GGTCTC 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 534, 743
Bsp143I GATC 3 cut(s) 370, 416, 424
BspACI CCGC 6 cut(s) 90, 131, 146, 166, 169, 512
BspANI GGCC 2 cut(s) 8, 832
BspCNI CTCAG 2 cut(s) 388, 823
BspLI GGNNCC 2 cut(s) 173, 816
BspPI GGATC 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 814
BspTI CTTAAG 1 cut(s) 697
BspTNI GGTCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 762
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 2 cut(s) 353, 557
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 3 cut(s) 370, 416, 424
BssNI GRCGYC 1 cut(s) 475
Bst2UI CCWGG 2 cut(s) 157, 516
Bst4CI ACNGT 2 cut(s) 311, 792
BstACI GRCGYC 1 cut(s) 475
BstAFI CTTAAG 1 cut(s) 697
BstC8I GCNNGC 6 cut(s) 6, 31, 43, 150, 530, 640
BstDEI CTNAG 3 cut(s) 396, 810, 878
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 152, 289
BstKTI GATC 3 cut(s) 373, 419, 427
BstMAI GTCTC 3 cut(s) 129, 556, 881
BstMBI GATC 3 cut(s) 370, 416, 424
BstMWI GCNNNNNNNGC 5 cut(s) 10, 149, 212, 286, 525
BstNI CCWGG 2 cut(s) 157, 516
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 155, 514
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 90, 404
BstXI CCANNNNNNTGG 1 cut(s) 360
BsuRI GGCC 2 cut(s) 8, 832
BtsCI GGATG 2 cut(s) 152, 289
Cac8I GCNNGC 6 cut(s) 6, 31, 43, 150, 530, 640
CaiI CAGNNNCTG 2 cut(s) 197, 638
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 2 cut(s) 509, 593
CseI GACGC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 25, 307
CspCI CAANNNNNGTGG 3 cut(s) 38, 585, 620
CviAII CATG 1 cut(s) 30
CviQI GTAC 2 cut(s) 25, 307
DdeI CTNAG 3 cut(s) 396, 810, 878
DpnI GATC 3 cut(s) 372, 418, 426
DpnII GATC 3 cut(s) 370, 416, 424
EciI GGCGGA 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 532
Eco24I GRGCYC 2 cut(s) 534, 743
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 509, 593
Eco53kI GAGCTC 1 cut(s) 532
Eco57I CTGAAG 2 cut(s) 296, 855
EcoICRI GAGCTC 1 cut(s) 532
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 725
EcoRII CCWGG 2 cut(s) 155, 514
EcoT38I GRGCYC 2 cut(s) 534, 743
FaeI CATG 1 cut(s) 33
FaiI YATR 8 cut(s) 31, 292, 299, 347, 349, 387, 717, 759
FatI CATG 1 cut(s) 29
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 5 cut(s) 79, 90, 167, 170, 393
FokI GGATG 2 cut(s) 139, 296
FriOI GRGCYC 2 cut(s) 534, 743
Fsp4HI GCNGC 5 cut(s) 79, 90, 167, 170, 393
FspBI CTAG 1 cut(s) 176
GluI GCNGC 5 cut(s) 79, 90, 167, 170, 393
HaeIII GGCC 2 cut(s) 8, 832
HapII CCGG 7 cut(s) 5, 52, 75, 82, 128, 456, 818
HgaI GACGC 1 cut(s) 464
Hin1I GRCGYC 1 cut(s) 475
Hin1II CATG 1 cut(s) 33
HinfI GANTC 4 cut(s) 271, 732, 821, 866
HpaII CCGG 7 cut(s) 5, 52, 75, 82, 128, 456, 818
HphI GGTGA 3 cut(s) 380, 470, 546
Hpy166II GTNNAC 1 cut(s) 788
Hpy188I TCNGA 6 cut(s) 276, 375, 624, 731, 804, 847
Hpy188III TCNNGA 2 cut(s) 566, 736
Hpy8I GTNNAC 1 cut(s) 788
Hpy99I CGWCG 1 cut(s) 480
HpyAV CCTTC 2 cut(s) 251, 652
HpyCH4III ACNGT 2 cut(s) 311, 792
HpyCH4V TGCA 4 cut(s) 33, 97, 143, 503
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 149, 212, 286, 525
HpyF3I CTNAG 3 cut(s) 396, 810, 878
Hsp92I GRCGYC 1 cut(s) 475
Hsp92II CATG 1 cut(s) 33
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 3 cut(s) 370, 416, 424
LmnI GCTCC 3 cut(s) 133, 177, 635
Lsp1109I GCAGC 2 cut(s) 90, 404
LweI GCATC 1 cut(s) 161
MaeI CTAG 1 cut(s) 176
MalI GATC 3 cut(s) 372, 418, 426
MboI GATC 3 cut(s) 370, 416, 424
MhlI GDGCHC 2 cut(s) 534, 743
MluCI AATT 6 cut(s) 68, 358, 465, 576, 679, 725
MlyI GAGTC 1 cut(s) 741
MnlI CCTC 6 cut(s) 114, 296, 325, 441, 584, 682
MroNI GCCGGC 1 cut(s) 4
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 2 cut(s) 444, 698
MspA1I CMGCKG 2 cut(s) 148, 395
MspCI CTTAAG 1 cut(s) 697
MspI CCGG 7 cut(s) 5, 52, 75, 82, 128, 456, 818
MspR9I CCNGG 2 cut(s) 157, 516
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 2 cut(s) 157, 516
MwoI GCNNNNNNNGC 5 cut(s) 10, 149, 212, 286, 525
NaeI GCCGGC 1 cut(s) 6
NdeII GATC 3 cut(s) 370, 416, 424
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 2 cut(s) 173, 816
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PctI GAATGC 1 cut(s) 811
PdiI GCCGGC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 3 cut(s) 271, 821, 866
PflFI GACNNNGTC 1 cut(s) 474
PkrI GCNGC 5 cut(s) 80, 91, 168, 171, 394
PleI GAGTC 1 cut(s) 740
PpsI GAGTC 1 cut(s) 740
PshBI ATTAAT 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 534
Psp6I CCWGG 2 cut(s) 155, 514
PspGI CCWGG 2 cut(s) 155, 514
PspN4I GGNNCC 2 cut(s) 173, 816
PspPI GGNCC 2 cut(s) 509, 593
PstNI CAGNNNCTG 2 cut(s) 197, 638
PsyI GACNNNGTC 1 cut(s) 474
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 26, 308
RsaNI GTAC 2 cut(s) 25, 307
SacI GAGCTC 1 cut(s) 534
SaqAI TTAA 2 cut(s) 444, 698
SatI GCNGC 5 cut(s) 79, 90, 167, 170, 393
Sau3AI GATC 3 cut(s) 370, 416, 424
Sau96I GGNCC 2 cut(s) 509, 593
SchI GAGTC 1 cut(s) 741
ScrFI CCNGG 2 cut(s) 157, 516
SduI GDGCHC 2 cut(s) 534, 743
SfaNI GCATC 1 cut(s) 161
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 2 cut(s) 509, 593
SmlI CTYRAG 1 cut(s) 697
SmoI CTYRAG 1 cut(s) 697
SphI GCATGC 1 cut(s) 33
Sse9I AATT 6 cut(s) 68, 358, 465, 576, 679, 725
SsiI CCGC 6 cut(s) 90, 131, 146, 166, 169, 512
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 2 cut(s) 155, 514
TaaI ACNGT 2 cut(s) 311, 792
TaqI TCGA 3 cut(s) 478, 735, 824
TasI AATT 6 cut(s) 68, 358, 465, 576, 679, 725
TauI GCSGC 3 cut(s) 92, 169, 172
TfiI GAWTC 3 cut(s) 271, 821, 866
Tru1I TTAA 2 cut(s) 444, 698
Tru9I TTAA 2 cut(s) 444, 698
TseI GCWGC 2 cut(s) 78, 392
TspDTI ATGAA 3 cut(s) 334, 504, 740
Tth111I GACNNNGTC 1 cut(s) 474
Vha464I CTTAAG 1 cut(s) 697
VpaK11BI GGWCC 2 cut(s) 509, 593
VspI ATTAAT 1 cut(s) 444
XagI CCTNNNNNAGG 1 cut(s) 300
XapI RAATTY 2 cut(s) 679, 725
XceI RCATGY 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.