Prupe.6G323000_v2.0.a1

PsbP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012050
Physical Location & Seq
Reverse (-)
28483943 .. 28484991
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G323000.1

Sequence Viewer

Length: 849 bp
ATGCCGACATTGCCACACTACTTTCATGCATGCAAACATGTATGCTTCAACCAGAGATGCATCACCATACAATCCTCCGGCGGCAACTGGAAAGAAAGGCCTCTGGCAGACCAATTTGCACCGCTAGAGTCCGGCTTTAGGCGGCGGCTTCTTGTTGGTTTAGGGTCAGCTTCGTTGGTTGTCCTTGGTGCCAATTTTGTGGGAACCACAAGTTTTCTTCTGGGGTTGTCGCCAGAAAGTAGTAGGAGTCTCAAGCTGGATGTGCTTTATCCAATAGGAGGGTACAGCAGGTGCATTGACACAAATGAAGGATTTGCAAGTTGGGTTGGAGATCAAACACTATTATATCGAGCAGCTGAGAAAAAGGAATTTGAAAGATCACTTGACCCTCCTCCTTTGAACATTAATACCAAATCCAGGGCTAATACTGGACGCCGTGGAAATGTTAGTGAACCTGTCGTGGCATTCGGCCCGCCGGCCACTACTGGCGAACTCAACGTTAGTGTCATTGTGTCCCCAGTTCCTCTTGATTTCAAAATTGAAGCATTCGGAGGACCAAAAGAGGTAGGGGAAGCTGTGGTTAGGACTGTCACGGGATCTGGCAAGCGCCCTGATGTGAAGGGAACTTTGATAAGAACAAATTTGAGAGAAGATAGTTTAAGAAATATCAAGTACTATGAGCTTGAATTCAGAGTTGAGAGCCCCTTGTTTCATCGGCATAACATCGCCGTCTGCTGTGCTCGTGGTGGTCGGTTATTTACTCTTAATGCTCAGGCACCGGAATCAGCATGGCCGGAGGTGAAGTCCGACTTCCATAGAATCGCAGAATCATTTAGTCTCACCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

283

Amino Acids

31.02

Weight (kDa)

9.05

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012050)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05410 AT3G05410 AT3G05410
fragaria_vesca FvH4_6g06280
malus_domestica MD04G1202900.v1.1 MD12G1216700.v1.1
prunus_persica Prupe.6G323000_v2.0.a1
pyrus_communis pycom04g17920 pycom12g20220
rosa_chinensis RchiOBHm_Chr3g0455321
rosa_laevigata RLG00000025370
rosa_multiflora Rmu_sc0002169.1_g000042
rosa_roxburghii Rroxscaffold_6G00424380
rosa_rugosa Rorug03G0006200.1
rosa_samantha Rh3AG066000 Rh3BG068100 Rh3CG066500 Rh3DG068100
rosa_wichuraiana Rw3G005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 279
Acc36I ACCTGC 1 cut(s) 279
AccB1I GGYRCC 2 cut(s) 188, 775
AciI CCGC 5 cut(s) 81, 122, 142, 145, 473
AclI AACGTT 1 cut(s) 498
AclWI GGATC 1 cut(s) 604
AcoI YGGCCR 2 cut(s) 477, 791
AcsI RAATTY 3 cut(s) 368, 640, 686
AcyI GRCGYC 1 cut(s) 433
AfaI GTAC 2 cut(s) 284, 674
AfiI CCNNNNNNNGG 3 cut(s) 138, 278, 417
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 6 cut(s) 49, 374, 400, 535, 542, 686
AjnI CCWGG 1 cut(s) 416
AluBI AGCT 5 cut(s) 170, 256, 356, 575, 682
AluI AGCT 5 cut(s) 170, 256, 356, 575, 682
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 2 cut(s) 254, 842
AlwI GGATC 1 cut(s) 604
AoxI GGCC 4 cut(s) 98, 469, 477, 791
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 3 cut(s) 368, 640, 686
AseI ATTAAT 1 cut(s) 405
AspLEI GCGC 1 cut(s) 609
AspS9I GGNCC 2 cut(s) 470, 554
AsuHPI GGTGA 3 cut(s) 55, 811, 832
AvaII GGWCC 1 cut(s) 554
BanI GGYRCC 2 cut(s) 188, 775
BanII GRGCYC 1 cut(s) 704
BauI CACGAG 1 cut(s) 741
Bbv12I GWGCWC 1 cut(s) 742
BbvI GCAGC 1 cut(s) 365
BceAI ACGGC 2 cut(s) 420, 713
BciT130I CCWGG 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 254, 842
BfaI CTAG 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 610
BfuAI ACCTGC 1 cut(s) 279
BisI GCNGC 4 cut(s) 82, 143, 146, 354
BlsI GCNGC 4 cut(s) 83, 144, 147, 355
BmcAI AGTACT 1 cut(s) 674
Bme1390I CCNGG 1 cut(s) 418
Bme18I GGWCC 1 cut(s) 554
BmgT120I GGNCC 2 cut(s) 470, 554
BmiI GGNNCC 3 cut(s) 190, 205, 777
BmrFI CCNGG 1 cut(s) 418
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 2 cut(s) 47, 69
BmuI ACTGGG 1 cut(s) 512
Bpu10I CCTNAGC 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 433
BsaJI CCNNGG 3 cut(s) 184, 417, 436
BsaWI WCCGGW 1 cut(s) 778
BsaXI ACNNNNNCTCC 2 cut(s) 788, 818
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 278, 417
Bse118I RCCGGY 1 cut(s) 475
Bse1I ACTGG 4 cut(s) 92, 433, 490, 518
Bse3DI GCAATG 1 cut(s) 8
BseBI CCWGG 1 cut(s) 418
BseDI CCNNGG 3 cut(s) 184, 417, 436
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 3 cut(s) 138, 278, 417
BseMI GCAATG 1 cut(s) 8
BseMII CTCAG 2 cut(s) 348, 785
BseNI ACTGG 4 cut(s) 92, 433, 490, 518
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 365
BshFI GGCC 4 cut(s) 100, 471, 479, 793
BshNI GGYRCC 2 cut(s) 188, 775
BsiHKAI GWGCWC 1 cut(s) 742
BsiSI CCGG 5 cut(s) 78, 132, 476, 779, 794
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 3 cut(s) 138, 278, 417
BsmAI GTCTC 2 cut(s) 254, 842
BsmFI GGGAC 1 cut(s) 499
BsmI GAATGC 2 cut(s) 464, 545
BsnI GGCC 4 cut(s) 100, 471, 479, 793
Bsp1286I GDGCHC 2 cut(s) 704, 742
Bsp143I GATC 3 cut(s) 331, 377, 596
BspACI CCGC 5 cut(s) 81, 122, 142, 145, 473
BspANI GGCC 4 cut(s) 100, 471, 479, 793
BspCNI CTCAG 2 cut(s) 349, 784
BspLI GGNNCC 3 cut(s) 190, 205, 777
BspMI ACCTGC 1 cut(s) 279
BspPI GGATC 1 cut(s) 604
BspT107I GGYRCC 2 cut(s) 188, 775
BsrDI GCAATG 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 475
BsrI ACTGG 4 cut(s) 92, 433, 490, 518
BssAI RCCGGY 1 cut(s) 475
BssECI CCNNGG 3 cut(s) 184, 417, 436
BssMI GATC 3 cut(s) 331, 377, 596
BssNI GRCGYC 1 cut(s) 433
BssSI CACGAG 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 741
Bst2UI CCWGG 1 cut(s) 418
Bst4CI ACNGT 1 cut(s) 589
BstACI GRCGYC 1 cut(s) 433
BstC8I GCNNGC 4 cut(s) 31, 473, 477, 605
BstDEI CTNAG 2 cut(s) 357, 771
BstDSI CCRYGG 1 cut(s) 436
BstF5I GGATG 1 cut(s) 265
BstH2I RGCGCY 1 cut(s) 610
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 3 cut(s) 334, 380, 599
BstMAI GTCTC 2 cut(s) 254, 842
BstMBI GATC 3 cut(s) 331, 377, 596
BstMWI GCNNNNNNNGC 2 cut(s) 10, 262
BstNI CCWGG 1 cut(s) 418
BstNSI RCATGY 2 cut(s) 33, 41
BstSCI CCNGG 1 cut(s) 416
BstV1I GCAGC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 596
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 596
BsuRI GGCC 4 cut(s) 100, 471, 479, 793
BtgI CCRYGG 1 cut(s) 436
BtgZI GCGATG 1 cut(s) 709
BtsCI GGATG 1 cut(s) 265
BveI ACCTGC 1 cut(s) 279
Cac8I GCNNGC 4 cut(s) 31, 473, 477, 605
CfoI GCGC 1 cut(s) 609
Cfr10I RCCGGY 1 cut(s) 475
Cfr13I GGNCC 2 cut(s) 470, 554
CseI GACGC 1 cut(s) 441
Csp6I GTAC 2 cut(s) 283, 673
CviAII CATG 4 cut(s) 26, 30, 38, 789
CviQI GTAC 2 cut(s) 283, 673
DdeI CTNAG 2 cut(s) 357, 771
DpnI GATC 3 cut(s) 333, 379, 598
DpnII GATC 3 cut(s) 331, 377, 596
EaeI YGGCCR 2 cut(s) 477, 791
Eco130I CCWWGG 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 704
Eco47I GGWCC 1 cut(s) 554
EcoRI GAATTC 1 cut(s) 686
EcoRII CCWGG 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 184
EcoT22I ATGCAT 2 cut(s) 31, 62
EcoT38I GRGCYC 1 cut(s) 704
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 4 cut(s) 29, 33, 41, 792
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FaqI GGGAC 1 cut(s) 499
FatI CATG 4 cut(s) 25, 29, 37, 788
FauI CCCGC 1 cut(s) 480
Fnu4HI GCNGC 4 cut(s) 82, 143, 146, 354
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 704
Fsp4HI GCNGC 4 cut(s) 82, 143, 146, 354
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 608
GluI GCNGC 4 cut(s) 82, 143, 146, 354
HaeII RGCGCY 1 cut(s) 610
HaeIII GGCC 4 cut(s) 100, 471, 479, 793
HapII CCGG 5 cut(s) 78, 132, 476, 779, 794
HgaI GACGC 1 cut(s) 441
HhaI GCGC 1 cut(s) 609
Hin1I GRCGYC 1 cut(s) 433
Hin1II CATG 4 cut(s) 29, 33, 41, 792
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HinfI GANTC 5 cut(s) 128, 247, 782, 819, 827
HpaII CCGG 5 cut(s) 78, 132, 476, 779, 794
HphI GGTGA 3 cut(s) 55, 811, 832
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 3 cut(s) 551, 692, 808
Hpy188III TCNNGA 2 cut(s) 527, 846
Hpy8I GTNNAC 1 cut(s) 452
HpyAV CCTTC 2 cut(s) 302, 613
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 6 cut(s) 29, 33, 60, 119, 294, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 262
HpyF3I CTNAG 2 cut(s) 357, 771
HpySE526I ACGT 1 cut(s) 498
Hsp92I GRCGYC 1 cut(s) 433
Hsp92II CATG 4 cut(s) 29, 33, 41, 792
HspAI GCGC 1 cut(s) 607
KroI GCCGGC 1 cut(s) 475
KroNI GCCGGC 1 cut(s) 477
Kzo9I GATC 3 cut(s) 331, 377, 596
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 2 cut(s) 47, 69
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 1 cut(s) 589
MalI GATC 3 cut(s) 333, 379, 598
MboI GATC 3 cut(s) 331, 377, 596
MboII GAAGA 2 cut(s) 209, 662
MflI RGATCY 1 cut(s) 596
MhlI GDGCHC 2 cut(s) 704, 742
MluCI AATT 6 cut(s) 113, 193, 368, 537, 640, 686
MlyI GAGTC 2 cut(s) 137, 256
MmeI TCCRAC 2 cut(s) 307, 831
MnlI CCTC 9 cut(s) 85, 111, 272, 399, 402, 534, 545, 556, 790
Mph1103I ATGCAT 2 cut(s) 31, 62
MroNI GCCGGC 1 cut(s) 475
MseI TTAA 3 cut(s) 405, 659, 765
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 5 cut(s) 78, 132, 476, 779, 794
MspR9I CCNGG 1 cut(s) 418
Mva1269I GAATGC 2 cut(s) 464, 545
MvaI CCWGG 1 cut(s) 418
MwoI GCNNNNNNNGC 2 cut(s) 10, 262
NaeI GCCGGC 1 cut(s) 477
NdeII GATC 3 cut(s) 331, 377, 596
NgoMIV GCCGGC 1 cut(s) 475
NlaIII CATG 4 cut(s) 29, 33, 41, 792
NlaIV GGNNCC 3 cut(s) 190, 205, 777
NmuCI GTSAC 1 cut(s) 589
NsiI ATGCAT 2 cut(s) 31, 62
NspI RCATGY 2 cut(s) 33, 41
PaeI GCATGC 1 cut(s) 33
PaqCI CACCTGC 1 cut(s) 279
PceI AGGCCT 1 cut(s) 100
PciI ACATGT 1 cut(s) 37
PctI GAATGC 2 cut(s) 464, 545
PdiI GCCGGC 1 cut(s) 477
PfeI GAWTC 3 cut(s) 782, 819, 827
PkrI GCNGC 4 cut(s) 83, 144, 147, 355
PleI GAGTC 2 cut(s) 136, 255
PpsI GAGTC 2 cut(s) 136, 255
PscI ACATGT 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 405
Psp1406I AACGTT 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 416
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 3 cut(s) 190, 205, 777
PspPI GGNCC 2 cut(s) 470, 554
PsuI RGATCY 1 cut(s) 596
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 2 cut(s) 284, 674
RsaNI GTAC 2 cut(s) 283, 673
SaqAI TTAA 3 cut(s) 405, 659, 765
SatI GCNGC 4 cut(s) 82, 143, 146, 354
Sau3AI GATC 3 cut(s) 331, 377, 596
Sau96I GGNCC 2 cut(s) 470, 554
ScaI AGTACT 1 cut(s) 674
SchI GAGTC 2 cut(s) 137, 256
ScrFI CCNGG 1 cut(s) 418
SduI GDGCHC 2 cut(s) 704, 742
SfaNI GCATC 2 cut(s) 47, 69
SinI GGWCC 1 cut(s) 554
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
SphI GCATGC 1 cut(s) 33
Sse9I AATT 6 cut(s) 113, 193, 368, 537, 640, 686
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 5 cut(s) 81, 122, 142, 145, 473
SspMI CTAG 1 cut(s) 125
StuI AGGCCT 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 416
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 589
TaiI ACGT 1 cut(s) 501
TaqI TCGA 1 cut(s) 349
TasI AATT 6 cut(s) 113, 193, 368, 537, 640, 686
TatI WGTACW 1 cut(s) 672
TauI GCSGC 3 cut(s) 84, 145, 148
TfiI GAWTC 3 cut(s) 782, 819, 827
Tru1I TTAA 3 cut(s) 405, 659, 765
Tru9I TTAA 3 cut(s) 405, 659, 765
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 3 cut(s) 14, 321, 701
VpaK11BI GGWCC 1 cut(s) 554
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 3 cut(s) 368, 640, 686
XceI RCATGY 2 cut(s) 33, 41
XspI CTAG 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 674
Zsp2I ATGCAT 2 cut(s) 31, 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.