FvH4_6g06280

PsbP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012050
Physical Location & Seq
Forward (+)
3598690 .. 3599907
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06280.t1

Sequence Viewer

Length: 888 bp
ATGCCGGCCTTGCCACACTACTTGTACGCATGCAGATACGCTTGCTTCAACCAGAAATGCGTGACACAATTCTCCCGAAGCCGGATAGCGGCTTTGAAAGTTGTAAATATCCGGGCAGAGAGGTCTCCGGCGGAGCAATTTGCACCACTGGCGTCCAGGTTTGGCCGGCGGCTTCTAGTTGGTTTGGGGTCAGCTTCTGTGGTTGCTCTTGGTGCTAACTTTTTAGGCATTACAAGTTTCCTTCTTGGGTTGTCGCCAGAAAGTAGTAGGAATCTTAAGCTGGATGTGCTATATCCTATAGGAGGGTACAGTAGGTGCATTGACACAAATGAAGGATTTGAGTTCATATACCCAGTAAATTGGGTTGGTGATCAGACATTGTTGTATAGAGCAGCTGAGAAAAGAGAGTTTGAAAGATCACTTGATCCACCTCCTTTGAACATGAATACCAAATCCGGTGATGGAATTGGACGCCGGCGAAATGTCAATGAACCTGTTGTTGCATTTGGACCGCCTGGGACCAGCGGCGAGCTCAATGTTAGTGTCATTGTGTCACCAGTTTCTCCTGATTTCAAAATTGAAGCATTTGGAGGACCAAAAGAGGTGGGAGAAGCTGTGGTTCGGACGATTACAGGAGCTGGCAAACGCCCTGATGTGAAGGGAACTTTGGTGAAATCAAATCTGAGAGAGGACAGCTTAAGAAATGTGAAATACTATGAGCTTGAATTCAGAGTTGAGAGCCCTTTGTTTCATCGTCATAATATCGCCGTCTGTTGCGTTCGCGGTGGTCGGTTATTTACTCTGAATGCTCAGGCACCTGAATCGAAATGGCCAGAAGTTAAGTCTGATTTCCAAAGGATTGCAGAATCATTTAGTCTCAGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

296

Amino Acids

32.58

Weight (kDa)

9.33

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 102 - 292 1.4e-28 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012050)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05410 AT3G05410 AT3G05410
fragaria_vesca FvH4_6g06280
malus_domestica MD04G1202900.v1.1 MD12G1216700.v1.1
prunus_persica Prupe.6G323000_v2.0.a1
pyrus_communis pycom04g17920 pycom12g20220
rosa_chinensis RchiOBHm_Chr3g0455321
rosa_laevigata RLG00000025370
rosa_multiflora Rmu_sc0002169.1_g000042
rosa_roxburghii Rroxscaffold_6G00424380
rosa_rugosa Rorug03G0006200.1
rosa_samantha Rh3AG066000 Rh3BG068100 Rh3CG066500 Rh3DG068100
rosa_wichuraiana Rw3G005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 814
AccII CGCG 1 cut(s) 783
AciI CCGC 6 cut(s) 89, 131, 169, 512, 525, 783
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 2 cut(s) 163, 830
AcsI RAATTY 1 cut(s) 725
AcyI GRCGYC 2 cut(s) 152, 472
AfaI GTAC 2 cut(s) 26, 308
AfiI CCNNNNNNNGG 3 cut(s) 81, 88, 302
AflII CTTAAG 2 cut(s) 275, 697
AgsI TTSAA 7 cut(s) 49, 97, 413, 439, 574, 581, 725
AjnI CCWGG 2 cut(s) 155, 514
AjuI GAANNNNNNNTTGG 2 cut(s) 650, 682
AluBI AGCT 9 cut(s) 194, 280, 395, 532, 614, 638, 696, 721, 882
AluI AGCT 9 cut(s) 194, 280, 395, 532, 614, 638, 696, 721, 882
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 2 cut(s) 129, 881
AlwI GGATC 1 cut(s) 419
AlwNI CAGNNNCTG 2 cut(s) 197, 638
AoxI GGCC 3 cut(s) 6, 163, 830
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 1 cut(s) 725
AspS9I GGNCC 3 cut(s) 509, 519, 593
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 4 cut(s) 380, 470, 546, 682
AvaII GGWCC 3 cut(s) 509, 519, 593
BalI TGGCCA 1 cut(s) 832
BanI GGYRCC 1 cut(s) 814
BanII GRGCYC 2 cut(s) 534, 743
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 1 cut(s) 404
BccI CCATC 1 cut(s) 455
BceAI ACGGC 1 cut(s) 752
BcgI CGANNNNNNTGC 2 cut(s) 804, 838
BciT130I CCWGG 2 cut(s) 157, 516
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 2 cut(s) 129, 881
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 297
BfrI CTTAAG 2 cut(s) 275, 697
BisI GCNGC 4 cut(s) 90, 170, 393, 526
BlsI GCNGC 4 cut(s) 91, 171, 394, 527
Bme1390I CCNGG 3 cut(s) 113, 157, 516
Bme18I GGWCC 3 cut(s) 509, 519, 593
BmgT120I GGNCC 3 cut(s) 509, 519, 593
BmiI GGNNCC 2 cut(s) 520, 816
BmrFI CCNGG 3 cut(s) 113, 157, 516
BmrI ACTGGG 1 cut(s) 347
BmuI ACTGGG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 2 cut(s) 152, 472
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 515
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 88, 302
Bse118I RCCGGY 3 cut(s) 4, 165, 474
Bse1I ACTGG 3 cut(s) 153, 353, 557
BseBI CCWGG 2 cut(s) 157, 516
BseDI CCNNGG 1 cut(s) 515
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 3 cut(s) 81, 88, 302
BseMII CTCAG 3 cut(s) 387, 674, 824
BseNI ACTGG 3 cut(s) 153, 353, 557
BseXI GCAGC 1 cut(s) 404
Bsh1236I CGCG 1 cut(s) 783
BshFI GGCC 3 cut(s) 8, 165, 832
BshNI GGYRCC 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 7 cut(s) 5, 82, 112, 128, 166, 456, 475
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 3 cut(s) 81, 88, 302
BsmAI GTCTC 2 cut(s) 129, 881
BsmFI GGGAC 1 cut(s) 532
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 3 cut(s) 8, 165, 832
Bso31I GGTCTC 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 534, 743
Bsp143I GATC 3 cut(s) 370, 416, 424
BspACI CCGC 6 cut(s) 89, 131, 169, 512, 525, 783
BspANI GGCC 3 cut(s) 8, 165, 832
BspCNI CTCAG 3 cut(s) 388, 675, 823
BspFNI CGCG 1 cut(s) 783
BspHI TCATGA 1 cut(s) 884
BspLI GGNNCC 2 cut(s) 520, 816
BspPI GGATC 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 814
BspTI CTTAAG 2 cut(s) 275, 697
BspTNI GGTCTC 1 cut(s) 129
BsrFI RCCGGY 3 cut(s) 4, 165, 474
BsrI ACTGG 3 cut(s) 153, 353, 557
BssAI RCCGGY 3 cut(s) 4, 165, 474
BssECI CCNNGG 1 cut(s) 515
BssMI GATC 3 cut(s) 370, 416, 424
BssNI GRCGYC 2 cut(s) 152, 472
Bst2UI CCWGG 2 cut(s) 157, 516
Bst4CI ACNGT 1 cut(s) 311
BstACI GRCGYC 2 cut(s) 152, 472
BstAFI CTTAAG 2 cut(s) 275, 697
BstC8I GCNNGC 7 cut(s) 6, 31, 43, 167, 476, 530, 640
BstDEI CTNAG 4 cut(s) 396, 683, 810, 878
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 783
BstKTI GATC 3 cut(s) 373, 419, 427
BstMAI GTCTC 2 cut(s) 129, 881
BstMBI GATC 3 cut(s) 370, 416, 424
BstMWI GCNNNNNNNGC 4 cut(s) 10, 149, 212, 286
BstNI CCWGG 2 cut(s) 157, 516
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 3 cut(s) 111, 155, 514
BstSFI CTRYAG 1 cut(s) 297
BstUI CGCG 1 cut(s) 783
BstV1I GCAGC 1 cut(s) 404
BstXI CCANNNNNNTGG 1 cut(s) 360
BsuRI GGCC 3 cut(s) 8, 165, 832
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 146
Cac8I GCNNGC 7 cut(s) 6, 31, 43, 167, 476, 530, 640
CaiI CAGNNNCTG 2 cut(s) 197, 638
CciI TCATGA 1 cut(s) 884
Cfr10I RCCGGY 3 cut(s) 4, 165, 474
Cfr13I GGNCC 3 cut(s) 509, 519, 593
CseI GACGC 2 cut(s) 141, 480
Csp6I GTAC 2 cut(s) 25, 307
CspCI CAANNNNNGTGG 5 cut(s) 38, 417, 452, 585, 620
CviAII CATG 3 cut(s) 30, 442, 885
CviQI GTAC 2 cut(s) 25, 307
DdeI CTNAG 4 cut(s) 396, 683, 810, 878
DpnI GATC 3 cut(s) 372, 418, 426
DpnII GATC 3 cut(s) 370, 416, 424
EaeI YGGCCR 2 cut(s) 163, 830
EciI GGCGGA 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 532
Eco24I GRGCYC 2 cut(s) 534, 743
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 3 cut(s) 509, 519, 593
Eco53kI GAGCTC 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 532
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 725
EcoRII CCWGG 2 cut(s) 155, 514
EcoT38I GRGCYC 2 cut(s) 534, 743
FaeI CATG 3 cut(s) 33, 445, 888
FaqI GGGAC 1 cut(s) 532
FatI CATG 3 cut(s) 29, 441, 884
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 4 cut(s) 90, 170, 393, 526
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 2 cut(s) 534, 743
Fsp4HI GCNGC 4 cut(s) 90, 170, 393, 526
FspBI CTAG 1 cut(s) 176
GluI GCNGC 4 cut(s) 90, 170, 393, 526
HaeIII GGCC 3 cut(s) 8, 165, 832
HapII CCGG 7 cut(s) 5, 82, 112, 128, 166, 456, 475
HgaI GACGC 2 cut(s) 141, 480
Hin1I GRCGYC 2 cut(s) 152, 472
Hin1II CATG 3 cut(s) 33, 445, 888
HinfI GANTC 3 cut(s) 271, 821, 866
HpaII CCGG 7 cut(s) 5, 82, 112, 128, 166, 456, 475
HphI GGTGA 4 cut(s) 380, 470, 546, 682
Hpy188I TCNGA 6 cut(s) 375, 624, 684, 731, 804, 847
Hpy188III TCNNGA 3 cut(s) 75, 566, 885
HpyAV CCTTC 3 cut(s) 251, 326, 652
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 5 cut(s) 33, 143, 318, 503, 863
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 149, 212, 286
HpyF3I CTNAG 4 cut(s) 396, 683, 810, 878
Hsp92I GRCGYC 2 cut(s) 152, 472
Hsp92II CATG 3 cut(s) 33, 445, 888
KroI GCCGGC 3 cut(s) 4, 165, 474
KroNI GCCGGC 3 cut(s) 6, 167, 476
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 3 cut(s) 370, 416, 424
LmnI GCTCC 2 cut(s) 133, 635
Lsp1109I GCAGC 1 cut(s) 404
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 2 cut(s) 61, 552
MalI GATC 3 cut(s) 372, 418, 426
MboI GATC 3 cut(s) 370, 416, 424
MhlI GDGCHC 2 cut(s) 534, 743
MlsI TGGCCA 1 cut(s) 832
MluCI AATT 6 cut(s) 68, 137, 358, 465, 576, 725
MluNI TGGCCA 1 cut(s) 832
MnlI CCTC 6 cut(s) 114, 296, 441, 584, 595, 682
Mox20I TGGCCA 1 cut(s) 832
MreI CGCCGGCG 1 cut(s) 474
MroNI GCCGGC 3 cut(s) 4, 165, 474
MscI TGGCCA 1 cut(s) 832
MseI TTAA 3 cut(s) 276, 698, 840
Msp20I TGGCCA 1 cut(s) 832
MspA1I CMGCKG 2 cut(s) 395, 525
MspCI CTTAAG 2 cut(s) 275, 697
MspI CCGG 7 cut(s) 5, 82, 112, 128, 166, 456, 475
MspR9I CCNGG 3 cut(s) 113, 157, 516
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 2 cut(s) 157, 516
MvnI CGCG 1 cut(s) 783
MwoI GCNNNNNNNGC 4 cut(s) 10, 149, 212, 286
NaeI GCCGGC 3 cut(s) 6, 167, 476
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 370, 416, 424
NgoMIV GCCGGC 3 cut(s) 4, 165, 474
NlaIII CATG 3 cut(s) 33, 445, 888
NlaIV GGNNCC 2 cut(s) 520, 816
NmuCI GTSAC 2 cut(s) 61, 552
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PagI TCATGA 1 cut(s) 884
PctI GAATGC 1 cut(s) 811
PdiI GCCGGC 3 cut(s) 6, 167, 476
PfeI GAWTC 3 cut(s) 271, 821, 866
PkrI GCNGC 4 cut(s) 91, 171, 394, 527
Psp124BI GAGCTC 1 cut(s) 534
Psp6I CCWGG 2 cut(s) 155, 514
PspGI CCWGG 2 cut(s) 155, 514
PspN4I GGNNCC 2 cut(s) 520, 816
PspPI GGNCC 3 cut(s) 509, 519, 593
PstNI CAGNNNCTG 2 cut(s) 197, 638
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 26, 308
RsaNI GTAC 2 cut(s) 25, 307
SacI GAGCTC 1 cut(s) 534
SaqAI TTAA 3 cut(s) 276, 698, 840
SatI GCNGC 4 cut(s) 90, 170, 393, 526
Sau3AI GATC 3 cut(s) 370, 416, 424
Sau96I GGNCC 3 cut(s) 509, 519, 593
ScrFI CCNGG 3 cut(s) 113, 157, 516
SduI GDGCHC 2 cut(s) 534, 743
SfcI CTRYAG 1 cut(s) 297
SgrAI CRCCGGYG 1 cut(s) 474
SinI GGWCC 3 cut(s) 509, 519, 593
SmlI CTYRAG 2 cut(s) 275, 697
SmoI CTYRAG 2 cut(s) 275, 697
SphI GCATGC 1 cut(s) 33
Sse9I AATT 6 cut(s) 68, 137, 358, 465, 576, 725
SsiI CCGC 6 cut(s) 89, 131, 169, 512, 525, 783
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 111, 155, 514
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 824
TasI AATT 6 cut(s) 68, 137, 358, 465, 576, 725
TauI GCSGC 3 cut(s) 92, 172, 528
TfiI GAWTC 3 cut(s) 271, 821, 866
Tru1I TTAA 3 cut(s) 276, 698, 840
Tru9I TTAA 3 cut(s) 276, 698, 840
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 2 cut(s) 61, 552
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 2 cut(s) 61, 552
TspDTI ATGAA 5 cut(s) 334, 345, 458, 504, 740
TspRI CASTG 1 cut(s) 153
Vha464I CTTAAG 2 cut(s) 275, 697
VpaK11BI GGWCC 3 cut(s) 509, 519, 593
XagI CCTNNNNNAGG 1 cut(s) 300
XapI RAATTY 1 cut(s) 725
XceI RCATGY 1 cut(s) 33
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.