Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015959

Physical Location & Seq

Genomic Coordinates Reverse (-)

1990349 .. 1992864

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06483.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCAGTGAAGAAAGCCTGCGAAATGTTCCCGAAGAGTTTGATCGAAGATGTTCACAAATGGGGTTGCATGAAGCAAACCGGTGTTAGCCTTAGATACATGATGGAGTTTGGTTCCAAACCTACTGAGAGGAATCTTTTGATTTCTGCTCAGTTTTTGCATAAGGAGCTTCCGATTCGCGTCGCCAGGAGAGCGATCGAACTCCAGACGCTTCCTTATGGTCTCTCTGATAAACCTGCCGTTTTGAAGGTGCGGGATTGGTATTTGGAATCTTTCAGGGACATGAGAGCATTTCCTGAGATTAAGGATTCGGGTGACGAGAAAGATTTCACTCAGATGATTAAGGCTGTCAAAGTAAGGCATAACAATGTGGTTCCCATGATGGCTTTGGGTGTTAATCAGCTCAAGAAAGGAATGAATTCTGGAAATCTTGATGAGATTCATCAGTTTCTTGATCGTTTCTACTTGTCGCGAATCGGGATCCGGATGCTTATTGGGCAGCACGTTGAGTTGCATAATCCAAATCCACCGCTTCATACAGTGGGTTATATACACACAAAGATGTCTCCTATGGAGGTAGCAAGGAATGCAAGTGAAGATGCTCGGTCAATTTGTTTCCGAGAGTACGGTTCTGCACCGGAAATAAACATATATGGCGATCCCAGTTTCACCTTTCCGTATGTTCCAACGCATTTGCATCTTATGATGTATGAGCTAGTCAAGAACTCTCTACGTGCTGTCCAAGAGCGATTTGTTGACTCTGATAGAGTTGCACCACCAATCCGCATTATAGTTGCTGATGGAATCGAAGATGTTACTATAAAGGTCTCAGATGAAGGTGGAGGTATAGCAAGAAGCGGTCTTCCCAGAATATTCACCTATCTTTACAGCACTGCAAGAAACCCGCTTGAGGAGGATGTCGATTTAGGAATAGCTGATGTTCCCGTGACTATGGCTGGATATGGTTATGGTCTTCCAATTAGTCGCTTGTATGCTCGATATTTCGGTGGAGATTTGCAGATCATATCCATGGAAGGATATGGGACTGATGCATACTTGCACTTGTCTCGCCTTGGAGATTCGCAAGAGCCTTTACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004740 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006090 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009927 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019752 GO:0023052 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0035639 GO:0036094 GO:0036211 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCDHK_Adom3 HATPase_c

Protein Analysis

366

Amino Acids

41.45

Weight (kDa)

6.61

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCDHK_Adom3	PF10436	29 - 185	3.3e-53	Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
HATPase_c	PF02518	229 - 355	5.9e-13	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06483
fragaria_vesca	FvH4_4g21480
malus_domestica	MD13G1140800.v1.1
prunus_persica	Prupe.1G105800_v2.0.a1 Prupe.1G105800_v2.0.a1
pyrus_communis	pycom16g12060
rosa_chinensis	RchiOBHm_Chr4g0427421
rosa_laevigata	RLG00000007245
rosa_multiflora	Rmu_sc0000603.1_g000007 Rmu_ssc0000351.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369090
rosa_rugosa	Rorug04G0218000
rosa_samantha	Rh4AG274200 Rh4CG295000
rosa_wichuraiana	Rw4G023760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccII	CGCG	2 cut(s)	180, 472
AccIII	TCCGGA	1 cut(s)	483
AciI	CCGC	5 cut(s)	253, 530, 784, 858, 905
AclWI	GGATC	3 cut(s)	475, 488, 653
AcsI	RAATTY	1 cut(s)	418
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	1 cut(s)	910
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	4 cut(s)	169, 403, 715, 935
AluI	AGCT	4 cut(s)	169, 403, 715, 935
Alw26I	GTCTC	4 cut(s)	227, 570, 832, 1071
AlwI	GGATC	3 cut(s)	475, 488, 653
Aor13HI	TCCGGA	1 cut(s)	483
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	1 cut(s)	418
AsiGI	ACCGGT	1 cut(s)	80
Asp700I	GAANNNNTTC	3 cut(s)	51, 326, 418
AsuHPI	GGTGA	3 cut(s)	326, 661, 868
BamHI	GGATCC	1 cut(s)	480
BbsI	GAAGAC	2 cut(s)	854, 965
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	3 cut(s)	97, 376, 794
BceAI	ACGGC	1 cut(s)	224
BcgI	CGANNNNNNTGC	2 cut(s)	1049, 1083
BciT130I	CCWGG	1 cut(s)	187
BcoDI	GTCTC	4 cut(s)	227, 570, 832, 1071
BfaI	CTAG	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	500
BlsI	GCNGC	1 cut(s)	501
Bme1390I	CCNGG	1 cut(s)	187
BmiI	GGNNCC	3 cut(s)	115, 375, 482
BmrFI	CCNGG	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	4 cut(s)	477, 589, 706, 1039
BmuI	ACTGGG	1 cut(s)	657
BpiI	GAAGAC	2 cut(s)	854, 965
BpmI	CTGGAG	1 cut(s)	188
BpuEI	CTTGAG	2 cut(s)	389, 929
BsaAI	YACGTR	1 cut(s)	734
BsaI	GGTCTC	2 cut(s)	227, 832
BsaJI	CCNNGG	2 cut(s)	1029, 1072
BsaWI	WCCGGW	3 cut(s)	80, 483, 637
Bsc4I	CCNNNNNNNGG	1 cut(s)	910
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	663
BseAI	TCCGGA	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	1029, 1072
BseGI	GGATG	2 cut(s)	492, 922
BseLI	CCNNNNNNNGG	1 cut(s)	910
BseMII	CTCAG	5 cut(s)	117, 164, 288, 347, 843
BseNI	ACTGG	1 cut(s)	663
BseRI	GAGGAG	1 cut(s)	926
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	2 cut(s)	180, 472
Bsh1285I	CGRYCG	1 cut(s)	198
BshTI	ACCGGT	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	81, 484, 638
BslFI	GGGAC	2 cut(s)	293, 1057
BslI	CCNNNNNNNGG	1 cut(s)	910
BsmAI	GTCTC	4 cut(s)	227, 570, 832, 1071
BsmFI	GGGAC	2 cut(s)	293, 1057
BsmI	GAATGC	1 cut(s)	592
Bso31I	GGTCTC	2 cut(s)	227, 832
Bsp13I	TCCGGA	1 cut(s)	483
Bsp143I	GATC	6 cut(s)	42, 195, 454, 480, 658, 1020
Bsp19I	CCATGG	1 cut(s)	1029
Bsp68I	TCGCGA	1 cut(s)	472
BspACI	CCGC	5 cut(s)	253, 530, 784, 858, 905
BspCNI	CTCAG	5 cut(s)	118, 163, 289, 346, 842
BspEI	TCCGGA	1 cut(s)	483
BspFNI	CGCG	2 cut(s)	180, 472
BspLI	GGNNCC	3 cut(s)	115, 375, 482
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	3 cut(s)	475, 488, 653
BspTNI	GGTCTC	2 cut(s)	227, 832
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	663
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	1029, 1072
BssMI	GATC	6 cut(s)	42, 195, 454, 480, 658, 1020
BssT1I	CCWWGG	2 cut(s)	1029, 1072
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	541, 629
Bst6I	CTCTTC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstBAI	YACGTR	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	6 cut(s)	92, 126, 150, 297, 333, 829
BstDSI	CCRYGG	1 cut(s)	1029
BstF5I	GGATG	2 cut(s)	492, 922
BstFNI	CGCG	2 cut(s)	180, 472
BstKTI	GATC	6 cut(s)	45, 198, 457, 483, 661, 1023
BstMAI	GTCTC	4 cut(s)	227, 570, 832, 1071
BstMBI	GATC	6 cut(s)	42, 195, 454, 480, 658, 1020
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 191, 496, 587
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstUI	CGCG	2 cut(s)	180, 472
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	2 cut(s)	854, 965
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	1029
BtsCI	GGATG	2 cut(s)	492, 922
BtsI	GCAGTG	2 cut(s)	12, 891
BtsIMutI	CAGTG	3 cut(s)	12, 546, 891
BtuMI	TCGCGA	1 cut(s)	472
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	80
CseI	GACGC	2 cut(s)	169, 217
Csp6I	GTAC	1 cut(s)	625
CspAI	ACCGGT	1 cut(s)	80
CviAII	CATG	5 cut(s)	70, 100, 283, 379, 1030
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	6 cut(s)	92, 126, 150, 297, 333, 829
DpnI	GATC	6 cut(s)	44, 197, 456, 482, 660, 1022
DpnII	GATC	6 cut(s)	42, 195, 454, 480, 658, 1020
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	1029, 1072
Eco31I	GGTCTC	2 cut(s)	227, 832
EcoRI	GAATTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	2 cut(s)	1029, 1072
EcoT22I	ATGCAT	1 cut(s)	1054
ErhI	CCWWGG	2 cut(s)	1029, 1072
FaeI	CATG	5 cut(s)	73, 103, 286, 382, 1033
FaqI	GGGAC	2 cut(s)	293, 1057
FatI	CATG	5 cut(s)	69, 99, 282, 378, 1029
FauI	CCCGC	2 cut(s)	246, 912
Fnu4HI	GCNGC	1 cut(s)	500
FokI	GGATG	2 cut(s)	499, 929
Fsp4HI	GCNGC	1 cut(s)	500
FspBI	CTAG	1 cut(s)	716
GluI	GCNGC	1 cut(s)	500
GsuI	CTGGAG	1 cut(s)	188
HapII	CCGG	3 cut(s)	81, 484, 638
HgaI	GACGC	2 cut(s)	169, 217
Hin1II	CATG	5 cut(s)	73, 103, 286, 382, 1033
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	9 cut(s)	133, 175, 269, 308, 439, 474, 758, 804, 1079
HpaII	CCGG	3 cut(s)	81, 484, 638
HphI	GGTGA	3 cut(s)	326, 661, 868
Hpy166II	GTNNAC	2 cut(s)	55, 757
Hpy188I	TCNGA	6 cut(s)	174, 229, 336, 620, 763, 832
Hpy8I	GTNNAC	2 cut(s)	55, 757
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	241, 830, 1028
HpyCH4III	ACNGT	2 cut(s)	541, 629
HpyCH4IV	ACGT	2 cut(s)	504, 733
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 191, 496, 587
HpyF3I	CTNAG	6 cut(s)	92, 126, 150, 297, 333, 829
HpySE526I	ACGT	2 cut(s)	504, 733
Hsp92II	CATG	5 cut(s)	73, 103, 286, 382, 1033
Kpn2I	TCCGGA	1 cut(s)	483
Kzo9I	GATC	6 cut(s)	42, 195, 454, 480, 658, 1020
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	4 cut(s)	477, 589, 706, 1039
MaeI	CTAG	1 cut(s)	716
MaeII	ACGT	2 cut(s)	504, 733
MaeIII	GTNAC	3 cut(s)	314, 814, 946
MalI	GATC	6 cut(s)	44, 197, 456, 482, 660, 1022
MboI	GATC	6 cut(s)	42, 195, 454, 480, 658, 1020
MboII	GAAGA	7 cut(s)	22, 46, 59, 608, 821, 854, 965
MflI	RGATCY	1 cut(s)	480
MluCI	AATT	3 cut(s)	418, 609, 978
MlyI	GAGTC	1 cut(s)	752
MmeI	TCCRAC	1 cut(s)	710
MnlI	CCTC	5 cut(s)	123, 568, 836, 904, 907
Mph1103I	ATGCAT	1 cut(s)	1054
MroI	TCCGGA	1 cut(s)	483
MroXI	GAANNNNTTC	3 cut(s)	51, 326, 418
MseI	TTAA	3 cut(s)	303, 342, 396
MslI	CAYNNNNRTG	4 cut(s)	335, 366, 560, 1028
MspI	CCGG	3 cut(s)	81, 484, 638
MspR9I	CCNGG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	2 cut(s)	180, 472
MwoI	GCNNNNNNNGC	4 cut(s)	166, 191, 496, 587
NcoI	CCATGG	1 cut(s)	1029
NdeII	GATC	6 cut(s)	42, 195, 454, 480, 658, 1020
NlaIII	CATG	5 cut(s)	73, 103, 286, 382, 1033
NlaIV	GGNNCC	3 cut(s)	115, 375, 482
NmuCI	GTSAC	2 cut(s)	314, 946
NruI	TCGCGA	1 cut(s)	472
NsiI	ATGCAT	1 cut(s)	1054
PctI	GAATGC	1 cut(s)	592
PdmI	GAANNNNTTC	3 cut(s)	51, 326, 418
PfeI	GAWTC	8 cut(s)	133, 175, 269, 308, 439, 474, 804, 1079
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	501
Ple19I	CGATCG	1 cut(s)	198
PleI	GAGTC	1 cut(s)	752
PpsI	GAGTC	1 cut(s)	752
Ppu21I	YACGTR	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	3 cut(s)	115, 375, 482
PsuI	RGATCY	1 cut(s)	480
PvuI	CGATCG	1 cut(s)	198
RruI	TCGCGA	1 cut(s)	472
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	4 cut(s)	335, 366, 560, 1028
SaqAI	TTAA	3 cut(s)	303, 342, 396
SatI	GCNGC	1 cut(s)	500
Sau3AI	GATC	6 cut(s)	42, 195, 454, 480, 658, 1020
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	1 cut(s)	187
SfaNI	GCATC	4 cut(s)	477, 589, 706, 1039
SmiMI	CAYNNNNRTG	4 cut(s)	335, 366, 560, 1028
SmlI	CTYRAG	2 cut(s)	404, 908
SmoI	CTYRAG	2 cut(s)	404, 908
Sse9I	AATT	3 cut(s)	418, 609, 978
SsiI	CCGC	5 cut(s)	253, 530, 784, 858, 905
SspI	AATATT	1 cut(s)	873
SspMI	CTAG	1 cut(s)	716
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	2 cut(s)	1029, 1072
TaaI	ACNGT	2 cut(s)	541, 629
TaiI	ACGT	2 cut(s)	507, 736
TaqI	TCGA	5 cut(s)	45, 198, 807, 921, 997
TaqII	GACCGA	1 cut(s)	594
TasI	AATT	3 cut(s)	418, 609, 978
TfiI	GAWTC	8 cut(s)	133, 175, 269, 308, 439, 474, 804, 1079
Tru1I	TTAA	3 cut(s)	303, 342, 396
Tru9I	TTAA	3 cut(s)	303, 342, 396
TscAI	CASTG	3 cut(s)	12, 546, 898
TseFI	GTSAC	2 cut(s)	314, 946
TseI	GCWGC	1 cut(s)	499
Tsp45I	GTSAC	2 cut(s)	314, 946
TspDTI	ATGAA	5 cut(s)	86, 431, 431, 524, 849
TspGWI	ACGGA	1 cut(s)	666
TspRI	CASTG	3 cut(s)	12, 546, 898
XapI	RAATTY	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmnI	GAANNNNTTC	3 cut(s)	51, 326, 418
XspI	CTAG	1 cut(s)	716
Zsp2I	ATGCAT	1 cut(s)	1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.