Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015959

Physical Location & Seq

Genomic Coordinates Forward (+)

37688199 .. 37688815

Gene Structure 617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0218000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGTGCGAGGATCCTTCCCAACTCGTTCATGGCACTCCACTAGGGGATGGTAATGTGCGTGTTTCCATCTATGCCGCGCTTGAGGAGAAAGCAAAAGTGCCATTTCCTGTGAAAGATGAAATTGAAACAGTGAAGCAGGCTATGGGGAGTTGGGTCGCATGGCCTAAACATCTAGTCATAAAATCTGCAGTCAAGAAACCTACCAAGGATAAAGCTGATAAGAAGAAGAAAAGGAAAGAGATAGGGGAAGAGGACTCGGAGATTGAATTTGGCTTAGCCAAATTGGCACCATCGTTGCCAGCTTCATTGAAGATGTTATGTTTGTGGGGTGAGGATGCATTCAAAGATGGGAATACAATCAACTTCTACATGGAGCCTAAAGTGTTTGGATATTCTCGCAAGACATTTATATTGGGAAAAGATGTTAGGCGACTTGCAAGCATGAGGGAAGTAACTGGAACTTGCATTGCTGTGTATCAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004740 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006090 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009927 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019752 GO:0023052 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0035639 GO:0036094 GO:0036211 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCDHK_Adom3 HATPase_c

Protein Analysis

162

Amino Acids

18.18

Weight (kDa)

9.03

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	6 - 61	1.3e-10	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0015959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06483
fragaria_vesca	FvH4_4g21480
malus_domestica	MD13G1140800.v1.1
prunus_persica	Prupe.1G105800_v2.0.a1 Prupe.1G105800_v2.0.a1
pyrus_communis	pycom16g12060
rosa_chinensis	RchiOBHm_Chr4g0427421
rosa_laevigata	RLG00000007245
rosa_multiflora	Rmu_sc0000603.1_g000007 Rmu_ssc0000351.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369090
rosa_rugosa	Rorug04G0218000
rosa_samantha	Rh4AG274200 Rh4CG295000
rosa_wichuraiana	Rw4G023760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccII	CGCG	1 cut(s)	80
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	2 cut(s)	8, 21
AcsI	RAATTY	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	128, 269, 313, 346
AluBI	AGCT	2 cut(s)	218, 305
AluI	AGCT	2 cut(s)	218, 305
AlwI	GGATC	2 cut(s)	8, 21
AoxI	GGCC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	289
BccI	CCATC	4 cut(s)	44, 77, 301, 344
BfaI	CTAG	2 cut(s)	44, 176
BfmI	CTRYAG	1 cut(s)	189
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	1 cut(s)	78
BlpI	GCTNAGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	79
BmiI	GGNNCC	3 cut(s)	15, 291, 378
BmsI	GCATC	1 cut(s)	328
Bpu1102I	GCTNAGC	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	463
Bse3DI	GCAATG	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	2 cut(s)	55, 343
BseMI	GCAATG	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	166
BshNI	GGYRCC	1 cut(s)	289
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	13
Bsp1720I	GCTNAGC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	15, 291, 378
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	2 cut(s)	8, 21
BspT107I	GGYRCC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	3 cut(s)	141, 303, 442
BstDEI	CTNAG	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	55, 343
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	55, 343
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	3 cut(s)	141, 303, 442
CfoI	GCGC	1 cut(s)	82
CviAII	CATG	4 cut(s)	32, 162, 373, 445
CviJI	RGCY	7 cut(s)	143, 166, 218, 276, 281, 305, 379
CviKI_1	RGCY	7 cut(s)	143, 166, 218, 276, 281, 305, 379
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	4 cut(s)	35, 165, 376, 448
FaiI	YATR	9 cut(s)	33, 75, 146, 163, 182, 322, 374, 413, 446
FatI	CATG	4 cut(s)	31, 161, 372, 444
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	2 cut(s)	62, 350
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	2 cut(s)	44, 176
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	4 cut(s)	35, 165, 376, 448
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	1 cut(s)	257
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	191, 341, 440, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	277
Hsp92II	CATG	4 cut(s)	35, 165, 376, 448
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	4 cut(s)	123, 125, 315, 444
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	2 cut(s)	44, 176
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	4 cut(s)	238, 241, 263, 325
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	3 cut(s)	123, 269, 284
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	5 cut(s)	4, 79, 247, 328, 441
Mph1103I	ATGCAT	1 cut(s)	343
MslI	CAYNNNNRTG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	341
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	35, 165, 376, 448
NlaIV	GGNNCC	3 cut(s)	15, 291, 378
NsiI	ATGCAT	1 cut(s)	343
PctI	GAATGC	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PspN4I	GGNNCC	3 cut(s)	15, 291, 378
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	473
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	251
SetI	ASST	4 cut(s)	205, 220, 307, 488
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	3 cut(s)	123, 269, 284
SsiI	CCGC	1 cut(s)	78
SspMI	CTAG	2 cut(s)	44, 176
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	133
TasI	AATT	3 cut(s)	123, 269, 284
TauI	GCSGC	1 cut(s)	80
TscAI	CASTG	1 cut(s)	138
TspDTI	ATGAA	3 cut(s)	20, 135, 297
TspRI	CASTG	1 cut(s)	138
XapI	RAATTY	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XspI	CTAG	2 cut(s)	44, 176
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.