pycom16g12060

Pyruvate dehydrogenase (acetyl-transferring) kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
8401232 .. 8404035
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g12060.1

Sequence Viewer

Length: 1101 bp
ATGGCGGTTAAGAAGGCGTGCGAGTCGTTCTCAAAGAGCTTGATCGACGAGGTGCAGAGCTGGGGCTGTATGAAGCAGACGGGGGTGAGCCTCAGGTACATGATGGACTTCGGGTCCCGGCCCACGCAGCGAAATTTCATAATCTCGGCGCAGTTTCTGCACAAGGAGCTCCCCATTCGGATTGCCAGGCGGGCGACTGAGCTCGAGAGCCTCCCTTACGGCTTGTCTGAGAAACCTGCCGTCTTGAAGGTAAGGGACTGGTATTTGGATTCCTTCCGTGATCTTAGAACCTTTCCTGATATCAAGGATGCTAAAGATGAGAAGGATTTTACACAAATGATTAAGGCGATTAAGGTGAGACACAACAATGTTGTCCCGATGATGGCTTTGGGTGTTCAGCAGTTGAAGAAAGAGAAGATTCTACATGACGGTCTTGATGAGATTCACCAATTTTTGGATCGCTTCTACTTGTCAAGAATTGGGATTCGCATGCTTATTGGCCAGCATGTTGAGTTGCACAATCCCAATCCCCCTCCTCATTGCGTGGGTTATATCGATACAAAGACATCTCCCATGGAGGTAGCACAAAATGCCACTGAGGATGCCCGCTCAATCTGCCTACGTGAGTATGGCAGCGCACCTAATGTTACTATCTATGGGGATCCCGATTTTACATTCCCGTATGTTCCAACACACTTGCATACTATGGTCTTTGAGTTGGTTAAGAACTCCTTACGTGCTGTCCAAGAGCGTTTCATGGACTCCGATAAAGTTGCACCTCCTGTTAGAATAATAGTGGCTGATGGAATTGAGGATGTCACTATCAAGGTCTCGGATGAGGGGGGTGGCATACCAAGAAGTGGTCTCCCCAAGATTTTTACGTATCTTTACAGCACTGCAAGTAACCCTTTGGATGAGCATTCAGATCTTTCGGACGCTGATGCAGTTACAATGGCTGGATATGGATATGGGCTTCCTATTAGCCGCTTGTATGCTATGTACTTTGGAGGGGATTTACAAATGATCTCTATGGAAGGATATGGGACCGACGCGTATCTGCATCTGTCTCGCTTGGGAGATTCTCAGGAGCCATTGCCATGA

Protein Analysis

367

Amino Acids

41.32

Weight (kDa)

5.9

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCDHK_Adom3 PF10436 29 - 186 8.7e-56 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
HATPase_c PF02518 230 - 355 1.1e-14 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015959)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06483
fragaria_vesca FvH4_4g21480
malus_domestica MD13G1140800.v1.1
prunus_persica Prupe.1G105800_v2.0.a1 Prupe.1G105800_v2.0.a1
pyrus_communis pycom16g12060
rosa_chinensis RchiOBHm_Chr4g0427421
rosa_laevigata RLG00000007245
rosa_multiflora Rmu_sc0000603.1_g000007 Rmu_ssc0000351.1_g000002
rosa_roxburghii Rroxscaffold_5G00369090
rosa_rugosa Rorug04G0218000
rosa_samantha Rh4AG274200 Rh4CG295000
rosa_wichuraiana Rw4G023760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 244
AccB7I CCANNNNNTGG 2 cut(s) 454, 860
AccBSI CCGCTC 1 cut(s) 609
AccII CGCG 1 cut(s) 1052
AciI CCGC 4 cut(s) 5, 190, 607, 985
AclWI GGATC 3 cut(s) 465, 656, 669
AcoI YGGCCR 1 cut(s) 499
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 2 cut(s) 98, 1001
AfiI CCNNNNNNNGG 3 cut(s) 382, 454, 860
AflIII ACRYGT 1 cut(s) 1050
AgsI TTSAA 2 cut(s) 247, 406
AhdI GACNNNNNGTC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 4 cut(s) 39, 60, 169, 202
AluI AGCT 4 cut(s) 39, 60, 169, 202
Alw21I GWGCWC 2 cut(s) 171, 204
Alw26I GTCTC 4 cut(s) 352, 835, 869, 1071
AlwI GGATC 3 cut(s) 465, 656, 669
AlwNI CAGNNNCTG 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 2 cut(s) 119, 499
ApeKI GCWGC 2 cut(s) 127, 633
ApoI RAATTY 1 cut(s) 133
AspLEI GCGC 2 cut(s) 151, 638
AspS9I GGNCC 3 cut(s) 114, 120, 1044
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 3 cut(s) 97, 367, 437
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 2 cut(s) 114, 1044
AxyI CCTNAGG 1 cut(s) 92
BalI TGGCCA 1 cut(s) 501
BamHI GGATCC 1 cut(s) 661
BanII GRGCYC 2 cut(s) 171, 204
Bbv12I GWGCWC 2 cut(s) 171, 204
BbvI GCAGC 2 cut(s) 139, 645
BccI CCATC 3 cut(s) 97, 376, 797
BceAI ACGGC 2 cut(s) 224, 235
BcgI CGANNNNNNTGC 4 cut(s) 755, 789, 1049, 1083
BciT130I CCWGG 1 cut(s) 187
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 4 cut(s) 352, 835, 869, 1071
BfuAI ACCTGC 1 cut(s) 244
BglI GCCNNNNNGGC 1 cut(s) 191
BglII AGATCT 1 cut(s) 925
BisI GCNGC 3 cut(s) 128, 634, 985
BlsI GCNGC 3 cut(s) 129, 635, 986
Bme1390I CCNGG 2 cut(s) 118, 187
Bme18I GGWCC 2 cut(s) 114, 1044
BmeRI GACNNNNNGTC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 3 cut(s) 114, 120, 1044
BmiI GGNNCC 5 cut(s) 115, 116, 663, 1045, 1089
BmrFI CCNGG 2 cut(s) 118, 187
BmsI GCATC 4 cut(s) 298, 592, 931, 1069
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpuMI CCSGG 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 555
BsaAI YACGTR 3 cut(s) 623, 737, 882
BsaI GGTCTC 2 cut(s) 835, 869
BsaJI CCNNGG 1 cut(s) 573
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 454, 860
Bse1I ACTGG 1 cut(s) 263
Bse21I CCTNAGG 1 cut(s) 92
Bse3DI GCAATG 2 cut(s) 538, 1091
BseBI CCWGG 1 cut(s) 187
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 5 cut(s) 313, 607, 820, 841, 919
BseLI CCNNNNNNNGG 3 cut(s) 382, 454, 860
BseMI GCAATG 2 cut(s) 538, 1091
BseMII CTCAG 5 cut(s) 106, 189, 219, 588, 1097
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 525
BseXI GCAGC 2 cut(s) 139, 645
BseYI CCCAGC 1 cut(s) 60
BsgI GTGCAG 2 cut(s) 74, 143
Bsh1236I CGCG 1 cut(s) 1052
BshFI GGCC 2 cut(s) 121, 501
BshVI ATCGAT 1 cut(s) 555
BsiHKAI GWGCWC 2 cut(s) 171, 204
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 4 cut(s) 100, 269, 359, 1057
BslI CCNNNNNNNGG 3 cut(s) 382, 454, 860
BsmAI GTCTC 4 cut(s) 352, 835, 869, 1071
BsmFI GGGAC 4 cut(s) 100, 269, 359, 1057
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 2 cut(s) 121, 501
Bso31I GGTCTC 2 cut(s) 835, 869
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 171, 204
Bsp143I GATC 6 cut(s) 42, 280, 457, 661, 925, 1023
Bsp19I CCATGG 1 cut(s) 573
BspACI CCGC 4 cut(s) 5, 190, 607, 985
BspANI GGCC 2 cut(s) 121, 501
BspCNI CTCAG 5 cut(s) 105, 190, 220, 589, 1096
BspDI ATCGAT 1 cut(s) 555
BspFNI CGCG 1 cut(s) 1052
BspLI GGNNCC 5 cut(s) 115, 116, 663, 1045, 1089
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 3 cut(s) 465, 656, 669
BspTNI GGTCTC 2 cut(s) 835, 869
BsrBI CCGCTC 1 cut(s) 609
BsrDI GCAATG 2 cut(s) 538, 1091
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 573
BssMI GATC 6 cut(s) 42, 280, 457, 661, 925, 1023
BssT1I CCWWGG 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 431
BstAPI GCANNNNNTGC 2 cut(s) 157, 590
BstBAI YACGTR 3 cut(s) 623, 737, 882
BstC8I GCNNGC 5 cut(s) 19, 192, 491, 503, 607
BstDEI CTNAG 6 cut(s) 92, 198, 228, 284, 597, 1083
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 5 cut(s) 313, 607, 820, 841, 919
BstFNI CGCG 1 cut(s) 1052
BstHHI GCGC 2 cut(s) 151, 638
BstKTI GATC 6 cut(s) 45, 283, 460, 664, 928, 1026
BstMAI GTCTC 4 cut(s) 352, 835, 869, 1071
BstMBI GATC 6 cut(s) 42, 280, 457, 661, 925, 1023
BstMWI GCNNNNNNNGC 6 cut(s) 127, 157, 166, 191, 590, 615
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 2 cut(s) 493, 509
BstSCI CCNGG 2 cut(s) 116, 185
BstSNI TACGTA 1 cut(s) 882
BstUI CGCG 1 cut(s) 1052
BstV1I GCAGC 2 cut(s) 139, 645
BstX2I RGATCY 2 cut(s) 661, 925
BstYI RGATCY 2 cut(s) 661, 925
Bsu15I ATCGAT 1 cut(s) 555
Bsu36I CCTNAGG 1 cut(s) 92
BsuRI GGCC 2 cut(s) 121, 501
BsuTUI ATCGAT 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 573
BtsCI GGATG 5 cut(s) 313, 607, 820, 841, 919
BtsI GCAGTG 1 cut(s) 894
BtsIMutI CAGTG 2 cut(s) 594, 894
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 5 cut(s) 19, 192, 491, 503, 607
CaiI CAGNNNCTG 1 cut(s) 157
CfoI GCGC 2 cut(s) 151, 638
Cfr13I GGNCC 3 cut(s) 114, 120, 1044
ClaI ATCGAT 1 cut(s) 555
CseI GACGC 2 cut(s) 944, 1058
Csp6I GTAC 2 cut(s) 97, 1000
CviAII CATG 7 cut(s) 100, 425, 490, 506, 574, 757, 1098
CviQI GTAC 2 cut(s) 97, 1000
DdeI CTNAG 6 cut(s) 92, 198, 228, 284, 597, 1083
DpnI GATC 6 cut(s) 44, 282, 459, 663, 927, 1025
DpnII GATC 6 cut(s) 42, 280, 457, 661, 925, 1023
DriI GACNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 499
Eam1105I GACNNNNNGTC 1 cut(s) 112
Ecl136II GAGCTC 2 cut(s) 169, 202
Eco105I TACGTA 1 cut(s) 882
Eco130I CCWWGG 1 cut(s) 573
Eco24I GRGCYC 2 cut(s) 171, 204
Eco31I GGTCTC 2 cut(s) 835, 869
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 114, 1044
Eco53kI GAGCTC 2 cut(s) 169, 202
Eco81I CCTNAGG 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 203
EcoICRI GAGCTC 2 cut(s) 169, 202
EcoO109I RGGNCCY 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 185
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 573
EcoT38I GRGCYC 2 cut(s) 171, 204
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 7 cut(s) 103, 428, 493, 509, 577, 760, 1101
FalI AAGNNNNNCTT 4 cut(s) 716, 748, 892, 924
FaqI GGGAC 4 cut(s) 100, 269, 359, 1057
FatI CATG 7 cut(s) 99, 424, 489, 505, 573, 756, 1097
FauI CCCGC 2 cut(s) 183, 614
Fnu4HI GCNGC 3 cut(s) 128, 634, 985
FokI GGATG 5 cut(s) 320, 614, 827, 848, 926
FriOI GRGCYC 2 cut(s) 171, 204
Fsp4HI GCNGC 3 cut(s) 128, 634, 985
GlaI GCGC 2 cut(s) 150, 637
GluI GCNGC 3 cut(s) 128, 634, 985
GsaI CCCAGC 1 cut(s) 64
HaeIII GGCC 2 cut(s) 121, 501
HapII CCGG 1 cut(s) 118
HgaI GACGC 2 cut(s) 944, 1058
HhaI GCGC 2 cut(s) 151, 638
Hin1II CATG 7 cut(s) 103, 428, 493, 509, 577, 760, 1101
Hin6I GCGC 2 cut(s) 149, 636
HinP1I GCGC 2 cut(s) 149, 636
HinfI GANTC 7 cut(s) 23, 269, 418, 442, 484, 761, 1079
HpaII CCGG 1 cut(s) 118
HphI GGTGA 3 cut(s) 97, 367, 437
Hpy188I TCNGA 6 cut(s) 180, 229, 766, 835, 925, 934
Hpy188III TCNNGA 8 cut(s) 205, 244, 296, 376, 434, 474, 665, 1085
Hpy99I CGWCG 2 cut(s) 50, 1052
HpyAV CCTTC 5 cut(s) 7, 241, 283, 316, 1028
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4IV ACGT 3 cut(s) 622, 736, 881
HpyCH4V TGCA 8 cut(s) 55, 160, 517, 700, 776, 899, 944, 1060
HpyF10VI GCNNNNNNNGC 6 cut(s) 127, 157, 166, 191, 590, 615
HpyF3I CTNAG 6 cut(s) 92, 198, 228, 284, 597, 1083
HpySE526I ACGT 3 cut(s) 622, 736, 881
Hsp92II CATG 7 cut(s) 103, 428, 493, 509, 577, 760, 1101
HspAI GCGC 2 cut(s) 149, 636
KflI GGGWCCC 1 cut(s) 114
Kzo9I GATC 6 cut(s) 42, 280, 457, 661, 925, 1023
LmnI GCTCC 3 cut(s) 166, 174, 1087
Lsp1109I GCAGC 2 cut(s) 139, 645
LweI GCATC 4 cut(s) 298, 592, 931, 1069
MaeII ACGT 3 cut(s) 622, 736, 881
MaeIII GTNAC 4 cut(s) 646, 817, 902, 946
MalI GATC 6 cut(s) 44, 282, 459, 663, 927, 1025
MbiI CCGCTC 1 cut(s) 609
MboI GATC 6 cut(s) 42, 280, 457, 661, 925, 1023
MboII GAAGA 2 cut(s) 418, 427
MflI RGATCY 2 cut(s) 661, 925
MhlI GDGCHC 2 cut(s) 171, 204
MlsI TGGCCA 1 cut(s) 501
MluCI AATT 4 cut(s) 133, 449, 477, 807
MluI ACGCGT 1 cut(s) 1050
MluNI TGGCCA 1 cut(s) 501
MlyI GAGTC 2 cut(s) 32, 755
MmeI TCCRAC 1 cut(s) 713
Mox20I TGGCCA 1 cut(s) 501
MscI TGGCCA 1 cut(s) 501
MseI TTAA 4 cut(s) 9, 342, 351, 723
MslI CAYNNNNRTG 2 cut(s) 366, 1096
Msp20I TGGCCA 1 cut(s) 501
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 118, 187
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 1 cut(s) 187
MvnI CGCG 1 cut(s) 1052
MwoI GCNNNNNNNGC 6 cut(s) 127, 157, 166, 191, 590, 615
NciI CCSGG 1 cut(s) 118
NcoI CCATGG 1 cut(s) 573
NdeII GATC 6 cut(s) 42, 280, 457, 661, 925, 1023
NlaIII CATG 7 cut(s) 103, 428, 493, 509, 577, 760, 1101
NlaIV GGNNCC 5 cut(s) 115, 116, 663, 1045, 1089
NmeAIII GCCGAG 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 817
NspI RCATGY 2 cut(s) 493, 509
PaeI GCATGC 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 203
PctI GAATGC 1 cut(s) 919
PfeI GAWTC 5 cut(s) 269, 418, 442, 484, 1079
PflMI CCANNNNNTGG 2 cut(s) 454, 860
PkrI GCNGC 3 cut(s) 129, 635, 986
PleI GAGTC 2 cut(s) 31, 755
PpsI GAGTC 2 cut(s) 31, 755
Ppu21I YACGTR 3 cut(s) 623, 737, 882
PpuMI RGGWCCY 1 cut(s) 114
Psp124BI GAGCTC 2 cut(s) 171, 204
Psp5II RGGWCCY 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 60
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 5 cut(s) 115, 116, 663, 1045, 1089
PspPI GGNCC 3 cut(s) 114, 120, 1044
PspPPI RGGWCCY 1 cut(s) 114
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 2 cut(s) 661, 925
RsaI GTAC 2 cut(s) 98, 1001
RsaNI GTAC 2 cut(s) 97, 1000
RseI CAYNNNNRTG 2 cut(s) 366, 1096
SacI GAGCTC 2 cut(s) 171, 204
SaqAI TTAA 4 cut(s) 9, 342, 351, 723
SatI GCNGC 3 cut(s) 128, 634, 985
Sau3AI GATC 6 cut(s) 42, 280, 457, 661, 925, 1023
Sau96I GGNCC 3 cut(s) 114, 120, 1044
SchI GAGTC 2 cut(s) 32, 755
ScrFI CCNGG 2 cut(s) 118, 187
SduI GDGCHC 2 cut(s) 171, 204
SfaNI GCATC 4 cut(s) 298, 592, 931, 1069
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 2 cut(s) 114, 1044
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 366, 1096
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SnaBI TACGTA 1 cut(s) 882
SphI GCATGC 1 cut(s) 493
Sse9I AATT 4 cut(s) 133, 449, 477, 807
SsiI CCGC 4 cut(s) 5, 190, 607, 985
SstI GAGCTC 2 cut(s) 171, 204
StyD4I CCNGG 2 cut(s) 116, 185
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 1 cut(s) 431
TaiI ACGT 3 cut(s) 625, 739, 884
TaqI TCGA 3 cut(s) 45, 204, 555
TaqII GACCGA 1 cut(s) 1061
TasI AATT 4 cut(s) 133, 449, 477, 807
TatI WGTACW 1 cut(s) 999
TauI GCSGC 1 cut(s) 987
TfiI GAWTC 5 cut(s) 269, 418, 442, 484, 1079
Tru1I TTAA 4 cut(s) 9, 342, 351, 723
Tru9I TTAA 4 cut(s) 9, 342, 351, 723
TscAI CASTG 2 cut(s) 601, 901
TseFI GTSAC 1 cut(s) 817
TseI GCWGC 2 cut(s) 127, 633
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 3 cut(s) 86, 127, 745
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 2 cut(s) 601, 901
Van91I CCANNNNNTGG 2 cut(s) 454, 860
VpaK11BI GGWCC 2 cut(s) 114, 1044
XapI RAATTY 1 cut(s) 133
XceI RCATGY 2 cut(s) 493, 509
XhoI CTCGAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.