Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015959

Physical Location & Seq

Genomic Coordinates Reverse (-)

14880144 .. 14882772

Gene Structure 2629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007245

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGGTGAAGAAGGCGTGCGAGTCCTTCTCGAAGAGCTTGATTGACGAGGTGCAGAGATGGGGGTGTATGAAGCAGACGGGGGTGAGTTTGAGGTACATGATGGAGTTTGGGTCGGAGCCCACGTTGAGGAATTTGTTGATTTCGGCCCAGTTTCTGCATAAGGAGTTGCCTATCAGGATTGCCAGGAGGGCTATCGAGCTCGAGACTCTGCCTTATGGCTTGTCCGAGAAACCTGCTGTGTTAAAGGTACGAGACTGGTATCTGGATTCATTCCGCGACCTGAGATCCTTTCCTGACATCAAGGATGAAAATGATGAGAAGGATTTTACACAAATGATCAAGGCTATCAAGGTGAGACACAACAATGTCGTTCCCATGATGGCTTTAGGTGTTCAACAGTTGAAGAAAGGCATTAATCCAAAGATTGTCTATGAGGATCTTGATGAGATTCACCAATTTTTGGATCGCTTCTACATGTCGAGAATTGGAATTCGCATGCTGATCGGCCAGCATGTCGAGTTGCACAATCCCAATCCCCCTCCTCATTGTGTGGGTTACATACACACAAAAATGTCTCCACTGGAGGTAGCACGAAATGCCAGTGAGGATGCTCGCTCTATTTGCTTTCGTGAGTATGGCAGCGCACCTAACGTTACCATCTATGGGGATCCTGATTTTACCTTCCCATATGTTCCTACACACTTGCATCTTATGGTCTTTGAGTTGGTTAAGAATTCTCTGCGTGCTGTCCAAGAGCGTTTTATGGACTCGGACAAAGTTGCACCTCGTATTAGAATTATAGTTGCTGATGGAATTGAAGATGTTACGATCAAGGTCTCAGATGAGGGCGGTGGCATACCAAGAAGTGGACTCCCCAAAATTTTCACATATCTTTATAGCACTGCAGCGAACCATGTGGATGAACAGACAGATCTTGGAACTACTGATTCAGTTACAATGGCTGGATATGGGTATGGGCTTCCTATAAGCCGCTTGTATGCTAGGTATTTTGGAGGAGATCTGCAAATAATCTCTATGGAAGGATACGGGACTGATGCATACCTCCATTTGTCTCGGTTGGGAGATTCACAGGAGCCTTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004740 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006090 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009927 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019752 GO:0023052 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0035639 GO:0036094 GO:0036211 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCDHK_Adom3 HATPase_c

Protein Analysis

370

Amino Acids

41.93

Weight (kDa)

6.14

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCDHK_Adom3	PF10436	29 - 189	2.5e-55	Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
HATPase_c	PF02518	233 - 358	1.3e-15	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06483
fragaria_vesca	FvH4_4g21480
malus_domestica	MD13G1140800.v1.1
prunus_persica	Prupe.1G105800_v2.0.a1 Prupe.1G105800_v2.0.a1
pyrus_communis	pycom16g12060
rosa_chinensis	RchiOBHm_Chr4g0427421
rosa_laevigata	RLG00000007245
rosa_multiflora	Rmu_sc0000603.1_g000007 Rmu_ssc0000351.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369090
rosa_rugosa	Rorug04G0218000
rosa_samantha	Rh4AG274200 Rh4CG295000
rosa_wichuraiana	Rw4G023760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccB7I	CCANNNNNTGG	2 cut(s)	463, 869
AccII	CGCG	1 cut(s)	279
AciI	CCGC	4 cut(s)	5, 277, 852, 994
AclI	AACGTT	1 cut(s)	654
AclWI	GGATC	5 cut(s)	282, 447, 474, 665, 678
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	4 cut(s)	133, 492, 736, 882
AfaI	GTAC	2 cut(s)	98, 252
AfiI	CCNNNNNNNGG	4 cut(s)	129, 463, 666, 869
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	3 cut(s)	398, 406, 821
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	2 cut(s)	39, 202
AluI	AGCT	2 cut(s)	39, 202
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	6 cut(s)	200, 249, 352, 582, 844, 1080
AlwI	GGATC	5 cut(s)	282, 447, 474, 665, 678
AlwNI	CAGNNNCTG	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	2 cut(s)	147, 508
ApeKI	GCWGC	2 cut(s)	642, 908
ApoI	RAATTY	4 cut(s)	133, 492, 736, 882
AseI	ATTAAT	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	647
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	4 cut(s)	19, 97, 367, 446
AvaI	CYCGRG	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	670
BanII	GRGCYC	2 cut(s)	123, 204
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	654, 920
BccI	CCATC	5 cut(s)	54, 97, 376, 668, 806
BcgI	CGANNNNNNTGC	4 cut(s)	218, 252, 487, 521
BciT130I	CCWGG	1 cut(s)	187
BciVI	GTATCC	1 cut(s)	1040
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	6 cut(s)	200, 249, 352, 582, 844, 1080
BfaI	CTAG	1 cut(s)	1005
BfmI	CTRYAG	1 cut(s)	906
BfuAI	ACCTGC	1 cut(s)	244
BfuI	GTATCC	1 cut(s)	1040
BglI	GCCNNNNNGGC	1 cut(s)	191
BglII	AGATCT	2 cut(s)	934, 1021
BisI	GCNGC	3 cut(s)	643, 909, 994
BlsI	GCNGC	3 cut(s)	644, 910, 995
Bme1390I	CCNGG	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	3 cut(s)	120, 672, 1098
BmrFI	CCNGG	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	3 cut(s)	601, 718, 1048
BmuI	ACTGGG	1 cut(s)	145
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpmI	CTGGAG	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	844
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 110, 128, 140
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 463, 666, 869
Bse1I	ACTGG	4 cut(s)	151, 263, 588, 603
BseBI	CCWGG	1 cut(s)	187
BseGI	GGATG	3 cut(s)	313, 616, 928
BseLI	CCNNNNNNNGG	4 cut(s)	129, 463, 666, 869
BseMII	CTCAG	2 cut(s)	275, 855
BseNI	ACTGG	4 cut(s)	151, 263, 588, 603
BseRI	GAGGAG	2 cut(s)	534, 1032
BseXI	GCAGC	2 cut(s)	654, 920
BsgI	GTGCAG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	149, 510
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	1066
BslI	CCNNNNNNNGG	4 cut(s)	129, 463, 666, 869
BsmAI	GTCTC	6 cut(s)	200, 249, 352, 582, 844, 1080
BsmFI	GGGAC	1 cut(s)	1066
BsnI	GGCC	2 cut(s)	149, 510
Bso31I	GGTCTC	1 cut(s)	844
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	123, 204
Bsp143I	GATC	9 cut(s)	287, 339, 439, 466, 504, 670, 831, 934, 1021
BspACI	CCGC	4 cut(s)	5, 277, 852, 994
BspANI	GGCC	2 cut(s)	149, 510
BspCNI	CTCAG	2 cut(s)	276, 854
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	120, 672, 1098
BspMAI	CTGCAG	1 cut(s)	910
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	5 cut(s)	282, 447, 474, 665, 678
BspQI	GCTCTTC	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	844
BsrI	ACTGG	4 cut(s)	151, 263, 588, 603
BssMI	GATC	9 cut(s)	287, 339, 439, 466, 504, 670, 831, 934, 1021
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstC8I	GCNNGC	5 cut(s)	19, 500, 512, 616, 747
BstDEI	CTNAG	2 cut(s)	284, 841
BstF5I	GGATG	3 cut(s)	313, 616, 928
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	647
BstKTI	GATC	9 cut(s)	290, 342, 442, 469, 507, 673, 834, 937, 1024
BstMAI	GTCTC	6 cut(s)	200, 249, 352, 582, 844, 1080
BstMBI	GATC	9 cut(s)	287, 339, 439, 466, 504, 670, 831, 934, 1021
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 599, 624
BstNI	CCWGG	1 cut(s)	187
BstNSI	RCATGY	3 cut(s)	481, 502, 518
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	906
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	654, 920
BstX2I	RGATCY	5 cut(s)	287, 439, 670, 934, 1021
BstYI	RGATCY	5 cut(s)	287, 439, 670, 934, 1021
BsuI	GTATCC	1 cut(s)	1040
BsuRI	GGCC	2 cut(s)	149, 510
BtsCI	GGATG	3 cut(s)	313, 616, 928
BtsI	GCAGTG	1 cut(s)	903
BtsIMutI	CAGTG	3 cut(s)	581, 610, 903
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	5 cut(s)	19, 500, 512, 616, 747
CaiI	CAGNNNCTG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	97, 251
CviAII	CATG	7 cut(s)	100, 379, 478, 499, 515, 917, 1107
CviQI	GTAC	2 cut(s)	97, 251
DdeI	CTNAG	2 cut(s)	284, 841
DpnI	GATC	9 cut(s)	289, 341, 441, 468, 506, 672, 833, 936, 1023
DpnII	GATC	9 cut(s)	287, 339, 439, 466, 504, 670, 831, 934, 1021
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	123, 204
Eco31I	GGTCTC	1 cut(s)	844
Eco53kI	GAGCTC	1 cut(s)	202
Eco88I	CYCGRG	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	202
EcoRI	GAATTC	2 cut(s)	492, 736
EcoRII	CCWGG	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	1063
EcoT38I	GRGCYC	2 cut(s)	123, 204
FaeI	CATG	7 cut(s)	103, 382, 481, 502, 518, 920, 1110
FaqI	GGGAC	1 cut(s)	1066
FatI	CATG	7 cut(s)	99, 378, 477, 498, 514, 916, 1106
FauNDI	CATATG	1 cut(s)	691
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	3 cut(s)	643, 909, 994
FokI	GGATG	3 cut(s)	320, 623, 935
FriOI	GRGCYC	2 cut(s)	123, 204
Fsp4HI	GCNGC	3 cut(s)	643, 909, 994
FspBI	CTAG	1 cut(s)	1005
GlaI	GCGC	1 cut(s)	646
GluI	GCNGC	3 cut(s)	643, 909, 994
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	2 cut(s)	149, 510
HhaI	GCGC	1 cut(s)	647
Hin1II	CATG	7 cut(s)	103, 382, 481, 502, 518, 920, 1110
Hin6I	GCGC	1 cut(s)	645
HinP1I	GCGC	1 cut(s)	645
HinfI	GANTC	8 cut(s)	23, 208, 269, 451, 770, 873, 950, 1088
HphI	GGTGA	4 cut(s)	19, 97, 367, 446
Hpy166II	GTNNAC	1 cut(s)	872
Hpy188I	TCNGA	4 cut(s)	118, 229, 775, 844
Hpy188III	TCNNGA	9 cut(s)	31, 178, 205, 266, 296, 443, 483, 632, 674
Hpy8I	GTNNAC	1 cut(s)	872
HpyAV	CCTTC	5 cut(s)	7, 37, 316, 694, 1037
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4IV	ACGT	2 cut(s)	125, 654
HpyCH4V	TGCA	8 cut(s)	55, 160, 526, 709, 785, 908, 1027, 1061
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 599, 624
HpyF3I	CTNAG	2 cut(s)	284, 841
HpySE526I	ACGT	2 cut(s)	125, 654
Hsp92II	CATG	7 cut(s)	103, 382, 481, 502, 518, 920, 1110
HspAI	GCGC	1 cut(s)	645
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	9 cut(s)	287, 339, 439, 466, 504, 670, 831, 934, 1021
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	2 cut(s)	118, 1096
Lsp1109I	GCAGC	2 cut(s)	654, 920
LweI	GCATC	3 cut(s)	601, 718, 1048
MaeI	CTAG	1 cut(s)	1005
MaeII	ACGT	2 cut(s)	125, 654
MaeIII	GTNAC	4 cut(s)	557, 655, 826, 955
MalI	GATC	9 cut(s)	289, 341, 441, 468, 506, 672, 833, 936, 1023
MboI	GATC	9 cut(s)	287, 339, 439, 466, 504, 670, 831, 934, 1021
MboII	GAAGA	4 cut(s)	22, 46, 418, 833
MflI	RGATCY	5 cut(s)	287, 439, 670, 934, 1021
MhlI	GDGCHC	2 cut(s)	123, 204
MluCI	AATT	8 cut(s)	133, 458, 486, 492, 736, 798, 816, 882
MlyI	GAGTC	4 cut(s)	32, 202, 764, 867
MmeI	TCCRAC	1 cut(s)	96
Mph1103I	ATGCAT	1 cut(s)	1063
MseI	TTAA	3 cut(s)	245, 417, 732
MslI	CAYNNNNRTG	3 cut(s)	366, 572, 921
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	191, 599, 624
NdeI	CATATG	1 cut(s)	691
NdeII	GATC	9 cut(s)	287, 339, 439, 466, 504, 670, 831, 934, 1021
NlaIII	CATG	7 cut(s)	103, 382, 481, 502, 518, 920, 1110
NlaIV	GGNNCC	3 cut(s)	120, 672, 1098
NsiI	ATGCAT	1 cut(s)	1063
NspI	RCATGY	3 cut(s)	481, 502, 518
PaeI	GCATGC	1 cut(s)	502
PaeR7I	CTCGAG	1 cut(s)	203
PciI	ACATGT	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfeI	GAWTC	4 cut(s)	269, 451, 950, 1088
PflMI	CCANNNNNTGG	2 cut(s)	463, 869
PkrI	GCNGC	3 cut(s)	644, 910, 995
PleI	GAGTC	4 cut(s)	31, 202, 764, 867
PpsI	GAGTC	4 cut(s)	31, 202, 764, 867
PscI	ACATGT	1 cut(s)	477
PshBI	ATTAAT	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	3 cut(s)	120, 672, 1098
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	910
PstNI	CAGNNNCTG	1 cut(s)	157
PsuI	RGATCY	5 cut(s)	287, 439, 670, 934, 1021
RsaI	GTAC	2 cut(s)	98, 252
RsaNI	GTAC	2 cut(s)	97, 251
RseI	CAYNNNNRTG	3 cut(s)	366, 572, 921
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	245, 417, 732
SatI	GCNGC	3 cut(s)	643, 909, 994
Sau3AI	GATC	9 cut(s)	287, 339, 439, 466, 504, 670, 831, 934, 1021
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	4 cut(s)	32, 202, 764, 867
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	2 cut(s)	123, 204
SfaNI	GCATC	3 cut(s)	601, 718, 1048
SfcI	CTRYAG	1 cut(s)	906
Sfr274I	CTCGAG	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	3 cut(s)	366, 572, 921
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	8 cut(s)	133, 458, 486, 492, 736, 798, 816, 882
SsiI	CCGC	4 cut(s)	5, 277, 852, 994
SspMI	CTAG	1 cut(s)	1005
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	402
TaiI	ACGT	2 cut(s)	128, 657
TaqI	TCGA	5 cut(s)	32, 198, 204, 482, 519
TasI	AATT	8 cut(s)	133, 458, 486, 492, 736, 798, 816, 882
TauI	GCSGC	1 cut(s)	996
TfiI	GAWTC	4 cut(s)	269, 451, 950, 1088
Tru1I	TTAA	3 cut(s)	245, 417, 732
Tru9I	TTAA	3 cut(s)	245, 417, 732
TscAI	CASTG	3 cut(s)	588, 610, 910
TseI	GCWGC	2 cut(s)	642, 908
TspDTI	ATGAA	4 cut(s)	86, 261, 324, 939
TspRI	CASTG	3 cut(s)	588, 610, 910
Van91I	CCANNNNNTGG	2 cut(s)	463, 869
VspI	ATTAAT	1 cut(s)	417
XapI	RAATTY	4 cut(s)	133, 492, 736, 882
XceI	RCATGY	3 cut(s)	481, 502, 518
XhoI	CTCGAG	1 cut(s)	203
XspI	CTAG	1 cut(s)	1005
Zsp2I	ATGCAT	1 cut(s)	1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.