MD13G1140800.v1.1

Pyruvate dehydrogenase (acetyl-transferring) kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
10851920 .. 10855310
3391 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1140800.v1.1.491

Sequence Viewer

Length: 1095 bp
ATGGCGGTTAAGAAGGCGAGCGAGTCGTTCTCGAAGAGCTTGATCGACGAGGTGCAGAGATGGGGATGTATGAAGCAGACGGGGGTGAGCCTCAGGTACATGATGGAGTTCGGGTCCCGGCCGACGCAGCGGAATTTCATAATCTCGGCGCAGTTTTTGCACAAGGAGCTCCCCATTCGGATTGCGAGGCGGGCAATTGAGCTCGAGAGCCTCCCTTATGGCTTGTCTGAGAAGCCTGCCGTTTTGAAGGTACGAGACTGGTATTTGGATTCCTTCCGTGATCTTAGAACCTTTCCTGATATCAAGGATGCTAAAGATGAAAAGGATTTTACACAAATGATTAAGGCGATTAAGGTAAGACACAACAATGTTGTCCCGATGATGGCTTTGGGTGTTCAGCAGTTGAAGAAGGAGAAGGTTCTCTACGAGGATCTTGATGAAATTCACCAATTTTTGGATCGCTTCTACATGTCAAGAATTGGGATTCGCATGCTCATTGGCCAGCATGTTGAGTTGCACAATCCCAATCCCCCTCCTCATTGTGTGGGTTATATAGATACAAAGATGTCTCCCATGGAGGTAGCACGAAATGCCACTGAGGACGCCCGTGCAATGTGCCTGCGTGAGTATGGAAGTGCACCTAATGTTACTATCTATGGGGATCCCGATTTTACATTCCCGTATGTTCCAACACACTTGCATACTATGGTCTTTGAGTTGGTTAAGAATTCCTTACGTGCTGTCCAAGAGCGTTTCATGGACTCGGATAAAGTTGCGCCTCCTGTTAAATTAATAGTTGCTGATGGAATTGAGGATGTCACTATCAAGGTCTCGGATGAGGGGGGTGGCATACCAAGAAGTGGTCTCCCCAAGATTTTTACATATCTTTACAGCACTGCAAGTAACCCTTTGGATTCAGATCTTTCGGAAGCTGATGCAGTTACAATGGCTGGATATGGGTACGGGCTTCCTATAAGCCGCTTGTATGCGAGGTACTTTGGAGGGGATTTACAAATTATCTCTATGGAAGGATACGGGACGGACGCGTATCTGCATTTGTCTCGCTTGGGAGATTCTCAGGAGCCATTGCCGTGA

Protein Analysis

365

Amino Acids

41.29

Weight (kDa)

6.17

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCDHK_Adom3 PF10436 29 - 186 1.7e-56 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
HATPase_c PF02518 230 - 353 6.5e-15 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015959)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06483
fragaria_vesca FvH4_4g21480
malus_domestica MD13G1140800.v1.1
prunus_persica Prupe.1G105800_v2.0.a1 Prupe.1G105800_v2.0.a1
pyrus_communis pycom16g12060
rosa_chinensis RchiOBHm_Chr4g0427421
rosa_laevigata RLG00000007245
rosa_multiflora Rmu_sc0000603.1_g000007 Rmu_ssc0000351.1_g000002
rosa_roxburghii Rroxscaffold_5G00369090
rosa_rugosa Rorug04G0218000
rosa_samantha Rh4AG274200 Rh4CG295000
rosa_wichuraiana Rw4G023760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 454, 860
AccII CGCG 1 cut(s) 1046
AciI CCGC 4 cut(s) 5, 130, 190, 979
AclWI GGATC 4 cut(s) 438, 465, 656, 669
AcoI YGGCCR 2 cut(s) 119, 499
AcsI RAATTY 3 cut(s) 133, 441, 727
AcyI GRCGYC 1 cut(s) 603
AfaI GTAC 4 cut(s) 98, 252, 962, 995
AfiI CCNNNNNNNGG 3 cut(s) 382, 454, 860
AflIII ACRYGT 2 cut(s) 468, 1044
AgsI TTSAA 2 cut(s) 247, 406
AluBI AGCT 4 cut(s) 39, 169, 202, 932
AluI AGCT 4 cut(s) 39, 169, 202, 932
Alw21I GWGCWC 3 cut(s) 171, 204, 640
Alw26I GTCTC 5 cut(s) 249, 573, 835, 869, 1065
Alw44I GTGCAC 1 cut(s) 636
AlwI GGATC 4 cut(s) 438, 465, 656, 669
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 2 cut(s) 119, 499
ApaLI GTGCAC 1 cut(s) 636
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 3 cut(s) 133, 441, 727
AseI ATTAAT 1 cut(s) 791
AspLEI GCGC 2 cut(s) 151, 778
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 2 cut(s) 97, 437
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 114
AxyI CCTNAGG 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 640
BalI TGGCCA 1 cut(s) 501
BamHI GGATCC 1 cut(s) 661
BanII GRGCYC 2 cut(s) 171, 204
BarI GAAGNNNNNNTAC 2 cut(s) 407, 439
Bbv12I GWGCWC 3 cut(s) 171, 204, 640
BbvI GCAGC 1 cut(s) 139
BccI CCATC 4 cut(s) 54, 97, 376, 797
BceAI ACGGC 2 cut(s) 224, 1075
BcgI CGANNNNNNTGC 2 cut(s) 1043, 1077
BciVI GTATCC 1 cut(s) 1025
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 5 cut(s) 249, 573, 835, 869, 1065
BfuI GTATCC 1 cut(s) 1025
BglII AGATCT 1 cut(s) 919
BisI GCNGC 2 cut(s) 128, 979
BlsI GCNGC 2 cut(s) 129, 980
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 4 cut(s) 115, 116, 663, 1083
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 298, 925
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpuMI CCSGG 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 737
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 603
BsaI GGTCTC 2 cut(s) 835, 869
BsaJI CCNNGG 1 cut(s) 573
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 454, 860
Bse1I ACTGG 1 cut(s) 263
Bse21I CCTNAGG 1 cut(s) 92
Bse3DI GCAATG 2 cut(s) 618, 1085
Bse8I GATNNNNATC 1 cut(s) 918
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 4 cut(s) 71, 313, 820, 841
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 3 cut(s) 382, 454, 860
BseMI GCAATG 2 cut(s) 618, 1085
BseMII CTCAG 4 cut(s) 106, 219, 588, 1091
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 525
BseSI GKGCMC 1 cut(s) 640
BseX3I CGGCCG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 1046
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 121, 501
BsiEI CGRYCG 1 cut(s) 122
BsiHKAI GWGCWC 3 cut(s) 171, 204, 640
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 3 cut(s) 100, 359, 1051
BslI CCNNNNNNNGG 3 cut(s) 382, 454, 860
BsmAI GTCTC 5 cut(s) 249, 573, 835, 869, 1065
BsmFI GGGAC 3 cut(s) 100, 359, 1051
BsnI GGCC 2 cut(s) 121, 501
Bso31I GGTCTC 2 cut(s) 835, 869
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 3 cut(s) 171, 204, 640
Bsp143I GATC 6 cut(s) 42, 280, 430, 457, 661, 919
Bsp19I CCATGG 1 cut(s) 573
BspACI CCGC 4 cut(s) 5, 130, 190, 979
BspANI GGCC 2 cut(s) 121, 501
BspCNI CTCAG 4 cut(s) 105, 220, 589, 1090
BspFNI CGCG 1 cut(s) 1046
BspLI GGNNCC 4 cut(s) 115, 116, 663, 1083
BspPI GGATC 4 cut(s) 438, 465, 656, 669
BspQI GCTCTTC 1 cut(s) 29
BspTNI GGTCTC 2 cut(s) 835, 869
BsrDI GCAATG 2 cut(s) 618, 1085
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 573
BssMI GATC 6 cut(s) 42, 280, 430, 457, 661, 919
BssNI GRCGYC 1 cut(s) 603
BssT1I CCWWGG 1 cut(s) 573
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 603
BstAPI GCANNNNNTGC 2 cut(s) 157, 590
BstBAI YACGTR 1 cut(s) 737
BstC8I GCNNGC 6 cut(s) 19, 192, 237, 491, 503, 620
BstDEI CTNAG 5 cut(s) 92, 228, 284, 597, 1077
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 4 cut(s) 71, 313, 820, 841
BstFNI CGCG 1 cut(s) 1046
BstHHI GCGC 2 cut(s) 151, 778
BstKTI GATC 6 cut(s) 45, 283, 433, 460, 664, 922
BstMAI GTCTC 5 cut(s) 249, 573, 835, 869, 1065
BstMBI GATC 6 cut(s) 42, 280, 430, 457, 661, 919
BstMCI CGRYCG 1 cut(s) 122
BstMWI GCNNNNNNNGC 5 cut(s) 127, 157, 166, 191, 590
BstNSI RCATGY 3 cut(s) 472, 493, 509
BstSCI CCNGG 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 640
BstUI CGCG 1 cut(s) 1046
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 3 cut(s) 430, 661, 919
BstYI RGATCY 3 cut(s) 430, 661, 919
BstZI CGGCCG 1 cut(s) 119
Bsu36I CCTNAGG 1 cut(s) 92
BsuI GTATCC 1 cut(s) 1025
BsuRI GGCC 2 cut(s) 121, 501
BtgI CCRYGG 1 cut(s) 573
BtsCI GGATG 4 cut(s) 71, 313, 820, 841
BtsI GCAGTG 1 cut(s) 894
BtsIMutI CAGTG 2 cut(s) 594, 894
Cac8I GCNNGC 6 cut(s) 19, 192, 237, 491, 503, 620
CfoI GCGC 2 cut(s) 151, 778
Cfr13I GGNCC 1 cut(s) 114
CseI GACGC 3 cut(s) 133, 611, 1052
Csp6I GTAC 4 cut(s) 97, 251, 961, 994
CviAII CATG 6 cut(s) 100, 469, 490, 506, 574, 757
CviQI GTAC 4 cut(s) 97, 251, 961, 994
DdeI CTNAG 5 cut(s) 92, 228, 284, 597, 1077
DpnI GATC 6 cut(s) 44, 282, 432, 459, 663, 921
DpnII GATC 6 cut(s) 42, 280, 430, 457, 661, 919
EaeI YGGCCR 2 cut(s) 119, 499
EagI CGGCCG 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Ecl136II GAGCTC 2 cut(s) 169, 202
EclXI CGGCCG 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 573
Eco24I GRGCYC 2 cut(s) 171, 204
Eco31I GGTCTC 2 cut(s) 835, 869
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 114
Eco52I CGGCCG 1 cut(s) 119
Eco53kI GAGCTC 2 cut(s) 169, 202
Eco81I CCTNAGG 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 203
EcoICRI GAGCTC 2 cut(s) 169, 202
EcoO109I RGGNCCY 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 727
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 573
EcoT38I GRGCYC 2 cut(s) 171, 204
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 6 cut(s) 103, 472, 493, 509, 577, 760
FalI AAGNNNNNCTT 4 cut(s) 716, 748, 892, 924
FaqI GGGAC 3 cut(s) 100, 359, 1051
FatI CATG 6 cut(s) 99, 468, 489, 505, 573, 756
FauI CCCGC 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 128, 979
FokI GGATG 4 cut(s) 78, 320, 827, 848
FriOI GRGCYC 2 cut(s) 171, 204
Fsp4HI GCNGC 2 cut(s) 128, 979
GlaI GCGC 2 cut(s) 150, 777
GluI GCNGC 2 cut(s) 128, 979
HaeIII GGCC 2 cut(s) 121, 501
HapII CCGG 1 cut(s) 118
HgaI GACGC 3 cut(s) 133, 611, 1052
HhaI GCGC 2 cut(s) 151, 778
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 6 cut(s) 103, 472, 493, 509, 577, 760
Hin6I GCGC 2 cut(s) 149, 776
HinP1I GCGC 2 cut(s) 149, 776
HinfI GANTC 6 cut(s) 23, 269, 484, 761, 914, 1073
HpaII CCGG 1 cut(s) 118
HphI GGTGA 2 cut(s) 97, 437
Hpy166II GTNNAC 1 cut(s) 638
Hpy188I TCNGA 6 cut(s) 180, 229, 766, 835, 919, 928
Hpy188III TCNNGA 8 cut(s) 31, 205, 296, 376, 434, 474, 665, 1079
Hpy8I GTNNAC 1 cut(s) 638
Hpy99I CGWCG 2 cut(s) 50, 127
HpyAV CCTTC 6 cut(s) 7, 241, 283, 403, 409, 1022
HpyCH4IV ACGT 1 cut(s) 736
HpyCH4V TGCA 9 cut(s) 55, 160, 517, 611, 638, 700, 899, 938, 1054
HpyF10VI GCNNNNNNNGC 5 cut(s) 127, 157, 166, 191, 590
HpyF3I CTNAG 5 cut(s) 92, 228, 284, 597, 1077
HpySE526I ACGT 1 cut(s) 736
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 6 cut(s) 103, 472, 493, 509, 577, 760
HspAI GCGC 2 cut(s) 149, 776
KflI GGGWCCC 1 cut(s) 114
Kzo9I GATC 6 cut(s) 42, 280, 430, 457, 661, 919
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 3 cut(s) 166, 174, 1081
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 298, 925
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 4 cut(s) 646, 817, 902, 940
MalI GATC 6 cut(s) 44, 282, 432, 459, 663, 921
MboI GATC 6 cut(s) 42, 280, 430, 457, 661, 919
MboII GAAGA 2 cut(s) 46, 418
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 3 cut(s) 430, 661, 919
MhlI GDGCHC 3 cut(s) 171, 204, 640
MlsI TGGCCA 1 cut(s) 501
MluCI AATT 9 cut(s) 133, 195, 441, 449, 477, 727, 788, 807, 1014
MluI ACGCGT 1 cut(s) 1044
MluNI TGGCCA 1 cut(s) 501
MlyI GAGTC 2 cut(s) 32, 755
MmeI TCCRAC 1 cut(s) 713
Mox20I TGGCCA 1 cut(s) 501
MscI TGGCCA 1 cut(s) 501
MseI TTAA 6 cut(s) 9, 342, 351, 723, 786, 791
MslI CAYNNNNRTG 2 cut(s) 366, 1090
Msp20I TGGCCA 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 195
MvnI CGCG 1 cut(s) 1046
MwoI GCNNNNNNNGC 5 cut(s) 127, 157, 166, 191, 590
NciI CCSGG 1 cut(s) 118
NcoI CCATGG 1 cut(s) 573
NdeII GATC 6 cut(s) 42, 280, 430, 457, 661, 919
NlaIII CATG 6 cut(s) 103, 472, 493, 509, 577, 760
NlaIV GGNNCC 4 cut(s) 115, 116, 663, 1083
NmeAIII GCCGAG 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 817
NspI RCATGY 3 cut(s) 472, 493, 509
PaeI GCATGC 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 203
PciI ACATGT 1 cut(s) 468
PciSI GCTCTTC 1 cut(s) 29
PfeI GAWTC 4 cut(s) 269, 484, 914, 1073
PflMI CCANNNNNTGG 2 cut(s) 454, 860
PkrI GCNGC 2 cut(s) 129, 980
PleI GAGTC 2 cut(s) 31, 755
PpsI GAGTC 2 cut(s) 31, 755
Ppu21I YACGTR 1 cut(s) 737
PpuMI RGGWCCY 1 cut(s) 114
PscI ACATGT 1 cut(s) 468
PshBI ATTAAT 1 cut(s) 791
Psp124BI GAGCTC 2 cut(s) 171, 204
Psp5II RGGWCCY 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 115, 116, 663, 1083
PspPI GGNCC 1 cut(s) 114
PspPPI RGGWCCY 1 cut(s) 114
PsuI RGATCY 3 cut(s) 430, 661, 919
RsaI GTAC 4 cut(s) 98, 252, 962, 995
RsaNI GTAC 4 cut(s) 97, 251, 961, 994
RseI CAYNNNNRTG 2 cut(s) 366, 1090
SacI GAGCTC 2 cut(s) 171, 204
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 6 cut(s) 9, 342, 351, 723, 786, 791
SatI GCNGC 2 cut(s) 128, 979
Sau3AI GATC 6 cut(s) 42, 280, 430, 457, 661, 919
Sau96I GGNCC 1 cut(s) 114
SchI GAGTC 2 cut(s) 32, 755
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 3 cut(s) 171, 204, 640
SfaNI GCATC 2 cut(s) 298, 925
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 114
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 366, 1090
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SphI GCATGC 1 cut(s) 493
Sse9I AATT 9 cut(s) 133, 195, 441, 449, 477, 727, 788, 807, 1014
SsiI CCGC 4 cut(s) 5, 130, 190, 979
SstI GAGCTC 2 cut(s) 171, 204
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 573
TaiI ACGT 1 cut(s) 739
TaqI TCGA 3 cut(s) 32, 45, 204
TasI AATT 9 cut(s) 133, 195, 441, 449, 477, 727, 788, 807, 1014
TauI GCSGC 1 cut(s) 981
TfiI GAWTC 4 cut(s) 269, 484, 914, 1073
Tru1I TTAA 6 cut(s) 9, 342, 351, 723, 786, 791
Tru9I TTAA 6 cut(s) 9, 342, 351, 723, 786, 791
TscAI CASTG 2 cut(s) 601, 901
TseFI GTSAC 1 cut(s) 817
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 5 cut(s) 86, 127, 333, 453, 745
TspGWI ACGGA 2 cut(s) 266, 1055
TspRI CASTG 2 cut(s) 601, 901
Van91I CCANNNNNTGG 2 cut(s) 454, 860
VneI GTGCAC 1 cut(s) 636
VpaK11BI GGWCC 1 cut(s) 114
VspI ATTAAT 1 cut(s) 791
XapI RAATTY 3 cut(s) 133, 441, 727
XceI RCATGY 3 cut(s) 472, 493, 509
XhoI CTCGAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.