Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015959

Physical Location & Seq

Genomic Coordinates Reverse (-)

8489662 .. 8493077

Gene Structure 3416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G105800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGGTTAAGAAGGCCTGCGAGTCCTTCTCCAAGAGCTTGATCGACGAGGTGCAGAGATGGGGCTGTATGAAGCAGACGGGCGTGAGCCTCAGGTATATGATGGAGTTTGGGTCCAGACCCACCCGGAGGAATTTTATAATCTCCGCTCAGTTTCTTCACAAGGAGCTCCCCATTAGGATTGCTAGGCGAGCAATTGAGCTCGAGGCCCTCCCTTATGGCTTGTCTGAGAAACCTGCCGTTTTGAAGGTACGAGACTGGTATTTGGATTCCTTCCGCGACCTTAGATCCTTTCCTGAAATTAAGGATGCTAATGATGAGAAGGAATTTACACACATGATTAAGGCGATTAAGGTAAGACACAATAACGTGGTCCCAATGATGGCTTTGGGCGTTCAACAGTTGAAGAAAGGCATAAATCCGAGGATTGTCTACGAGGATCTTGATGAGATTCACCAATTTTTGGATCGCTTCTACATGTCAAGAATTGGAATTCGCATGCTCATCGGCCAGCATGTCGAGTTGCACAATCCCAACCCCCCTCCTCATGTCGTGGGTTATATACATACAAAAATGTCTCCTGTGGAGGTAGCACGAAATGCTAGTGAGGATGCCCGCTCAATCTGCCAACGGGAGTATGGAAGCGCACCTAAAGTTAATATCTATGGGGATCCTGATTTTACATTCCCGTATGTTCCAACACACTTGCATACTATGGTCTTCGAGTTAGTTAAGAACTCCTTGCGTGCTGTCCAAGAGCGGTACATGGACTCGGACAAAGTTGCACCTTCTGTTAGAATAATAGTTGCCGATGGAATTGAGGATGTTACTATCAAGGTCTCAGATGAGGGGGGTGGCATACCAAGAAGTGGACTCCCCAAAATCTTTACATATCTTTACAGCACTGCAAGGAACCCTTTGGATGAGCATTCAGAAATCTCTGAAGCTGATGCAGTTACAATGGCTGGGTATGGATATGGGCTTCCTATAAGTCGCTTGTATGCTAGGTATTTTGGAGGAGATTTGCAAATTATCTCAATGGAAGGATATGGGACTGACGCATATCTCCATTTGTCTCGCTTGGGAGATTCACAGGAGCCCTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004740 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006090 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009927 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019752 GO:0023052 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0035639 GO:0036094 GO:0036211 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCDHK_Adom3 HATPase_c

Protein Analysis

370

Amino Acids

42.0

Weight (kDa)

6.88

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06483
fragaria_vesca	FvH4_4g21480
malus_domestica	MD13G1140800.v1.1
prunus_persica	Prupe.1G105800_v2.0.a1 Prupe.1G105800_v2.0.a1
pyrus_communis	pycom16g12060
rosa_chinensis	RchiOBHm_Chr4g0427421
rosa_laevigata	RLG00000007245
rosa_multiflora	Rmu_sc0000603.1_g000007 Rmu_ssc0000351.1_g000002
rosa_roxburghii	Rroxscaffold_5G00369090
rosa_rugosa	Rorug04G0218000
rosa_samantha	Rh4AG274200 Rh4CG295000
rosa_wichuraiana	Rw4G023760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	244
AccB7I	CCANNNNNTGG	2 cut(s)	463, 869
AccBSI	CCGCTC	3 cut(s)	149, 618, 760
AccI	GTMKAC	1 cut(s)	432
AccII	CGCG	1 cut(s)	279
AciI	CCGC	5 cut(s)	5, 147, 277, 616, 760
AclWI	GGATC	5 cut(s)	282, 447, 474, 665, 678
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	3 cut(s)	133, 326, 492
AcuI	CTGAAG	1 cut(s)	963
AfaI	GTAC	2 cut(s)	252, 764
AfiI	CCNNNNNNNGG	4 cut(s)	129, 382, 463, 869
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	3 cut(s)	247, 398, 406
AluBI	AGCT	4 cut(s)	39, 169, 202, 947
AluI	AGCT	4 cut(s)	39, 169, 202, 947
Alw21I	GWGCWC	2 cut(s)	171, 204
Alw26I	GTCTC	4 cut(s)	249, 582, 844, 1080
AlwI	GGATC	5 cut(s)	282, 447, 474, 665, 678
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	3 cut(s)	15, 207, 508
ApoI	RAATTY	3 cut(s)	133, 326, 492
AspLEI	GCGC	1 cut(s)	647
AspS9I	GGNCC	3 cut(s)	114, 208, 373
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	446
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	114, 373
AxyI	CCTNAGG	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	670
BanII	GRGCYC	3 cut(s)	171, 204, 1101
BbsI	GAAGAC	1 cut(s)	712
Bbv12I	GWGCWC	2 cut(s)	171, 204
BccI	CCATC	4 cut(s)	54, 97, 376, 806
BceAI	ACGGC	1 cut(s)	224
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	4 cut(s)	249, 582, 844, 1080
BfaI	CTAG	3 cut(s)	186, 603, 1005
BfuAI	ACCTGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	2 cut(s)	114, 373
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	3 cut(s)	114, 208, 373
BmiI	GGNNCC	5 cut(s)	115, 375, 672, 914, 1098
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	3 cut(s)	298, 601, 940
BpiI	GAAGAC	1 cut(s)	712
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpuMI	CCSGG	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	844
BsaJI	CCNNGG	1 cut(s)	422
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 382, 463, 869
Bse1I	ACTGG	1 cut(s)	263
Bse21I	CCTNAGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	4 cut(s)	313, 616, 829, 928
BseLI	CCNNNNNNNGG	4 cut(s)	129, 382, 463, 869
BseMII	CTCAG	4 cut(s)	106, 164, 219, 855
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	2 cut(s)	534, 1032
BseYI	CCCAGC	1 cut(s)	965
BsgI	GTGCAG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	17, 209, 510
BsiHKAI	GWGCWC	2 cut(s)	171, 204
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	2 cut(s)	359, 1066
BslI	CCNNNNNNNGG	4 cut(s)	129, 382, 463, 869
BsmAI	GTCTC	4 cut(s)	249, 582, 844, 1080
BsmFI	GGGAC	2 cut(s)	359, 1066
BsmI	GAATGC	1 cut(s)	928
BsnI	GGCC	3 cut(s)	17, 209, 510
Bso31I	GGTCTC	1 cut(s)	844
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	3 cut(s)	171, 204, 1101
Bsp143I	GATC	5 cut(s)	42, 287, 439, 466, 670
BspACI	CCGC	5 cut(s)	5, 147, 277, 616, 760
BspANI	GGCC	3 cut(s)	17, 209, 510
BspCNI	CTCAG	4 cut(s)	105, 163, 220, 854
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	5 cut(s)	115, 375, 672, 914, 1098
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	5 cut(s)	282, 447, 474, 665, 678
BspTNI	GGTCTC	1 cut(s)	844
BsrBI	CCGCTC	3 cut(s)	149, 618, 760
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	5 cut(s)	42, 287, 439, 466, 670
Bst4CI	ACNGT	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstC8I	GCNNGC	6 cut(s)	19, 192, 500, 512, 616, 747
BstDEI	CTNAG	5 cut(s)	92, 150, 228, 284, 841
BstF5I	GGATG	4 cut(s)	313, 616, 829, 928
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	647
BstKTI	GATC	5 cut(s)	45, 290, 442, 469, 673
BstMAI	GTCTC	4 cut(s)	249, 582, 844, 1080
BstMBI	GATC	5 cut(s)	42, 287, 439, 466, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 599, 624
BstNSI	RCATGY	3 cut(s)	481, 502, 518
BstSCI	CCNGG	1 cut(s)	125
BstUI	CGCG	1 cut(s)	279
BstV2I	GAAGAC	1 cut(s)	712
BstX2I	RGATCY	3 cut(s)	287, 439, 670
BstYI	RGATCY	3 cut(s)	287, 439, 670
Bsu36I	CCTNAGG	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	17, 209, 510
BtsCI	GGATG	4 cut(s)	313, 616, 829, 928
BtsI	GCAGTG	1 cut(s)	903
BtsIMutI	CAGTG	1 cut(s)	903
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	6 cut(s)	19, 192, 500, 512, 616, 747
CfoI	GCGC	1 cut(s)	647
Cfr13I	GGNCC	3 cut(s)	114, 208, 373
CseI	GACGC	1 cut(s)	1067
Csp6I	GTAC	2 cut(s)	251, 763
CviAII	CATG	7 cut(s)	337, 478, 499, 515, 548, 766, 1107
CviQI	GTAC	2 cut(s)	251, 763
DdeI	CTNAG	5 cut(s)	92, 150, 228, 284, 841
DpnI	GATC	5 cut(s)	44, 289, 441, 468, 672
DpnII	GATC	5 cut(s)	42, 287, 439, 466, 670
EaeI	YGGCCR	1 cut(s)	508
Ecl136II	GAGCTC	2 cut(s)	169, 202
Eco147I	AGGCCT	1 cut(s)	17
Eco24I	GRGCYC	3 cut(s)	171, 204, 1101
Eco31I	GGTCTC	1 cut(s)	844
Eco47I	GGWCC	2 cut(s)	114, 373
Eco53kI	GAGCTC	2 cut(s)	169, 202
Eco57I	CTGAAG	1 cut(s)	963
Eco81I	CCTNAGG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	203
EcoICRI	GAGCTC	2 cut(s)	169, 202
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	492
EcoT38I	GRGCYC	3 cut(s)	171, 204, 1101
FaeI	CATG	7 cut(s)	340, 481, 502, 518, 551, 769, 1110
FalI	AAGNNNNNCTT	4 cut(s)	725, 757, 901, 933
FaqI	GGGAC	2 cut(s)	359, 1066
FatI	CATG	7 cut(s)	336, 477, 498, 514, 547, 765, 1106
FauI	CCCGC	1 cut(s)	623
FblI	GTMKAC	1 cut(s)	432
FokI	GGATG	4 cut(s)	320, 623, 836, 935
FriOI	GRGCYC	3 cut(s)	171, 204, 1101
FspBI	CTAG	3 cut(s)	186, 603, 1005
GlaI	GCGC	1 cut(s)	646
GsaI	CCCAGC	1 cut(s)	969
HaeIII	GGCC	3 cut(s)	17, 209, 510
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	1 cut(s)	1067
HhaI	GCGC	1 cut(s)	647
Hin1II	CATG	7 cut(s)	340, 481, 502, 518, 551, 769, 1110
Hin6I	GCGC	1 cut(s)	645
HinP1I	GCGC	1 cut(s)	645
HinfI	GANTC	6 cut(s)	23, 269, 451, 770, 873, 1088
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	433, 872
Hpy188I	TCNGA	6 cut(s)	229, 423, 775, 844, 934, 943
Hpy188III	TCNNGA	5 cut(s)	117, 296, 443, 483, 674
Hpy8I	GTNNAC	2 cut(s)	433, 872
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	7 cut(s)	7, 37, 241, 283, 316, 798, 1037
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	7 cut(s)	55, 526, 709, 785, 908, 953, 1027
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 599, 624
HpyF3I	CTNAG	5 cut(s)	92, 150, 228, 284, 841
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	7 cut(s)	340, 481, 502, 518, 551, 769, 1110
HspAI	GCGC	1 cut(s)	645
Kzo9I	GATC	5 cut(s)	42, 287, 439, 466, 670
LmnI	GCTCC	3 cut(s)	166, 174, 1096
LweI	GCATC	3 cut(s)	298, 601, 940
MaeI	CTAG	3 cut(s)	186, 603, 1005
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	826, 955
MalI	GATC	5 cut(s)	44, 289, 441, 468, 672
MbiI	CCGCTC	3 cut(s)	149, 618, 760
MboI	GATC	5 cut(s)	42, 287, 439, 466, 670
MboII	GAAGA	3 cut(s)	149, 418, 712
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	3 cut(s)	287, 439, 670
MhlI	GDGCHC	3 cut(s)	171, 204, 1101
MluCI	AATT	9 cut(s)	133, 195, 300, 326, 458, 486, 492, 816, 1029
MlyI	GAGTC	3 cut(s)	32, 764, 867
MmeI	TCCRAC	1 cut(s)	722
MseI	TTAA	6 cut(s)	9, 303, 342, 351, 657, 732
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	127
MunI	CAATTG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	928
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	191, 599, 624
NciI	CCSGG	1 cut(s)	127
NdeII	GATC	5 cut(s)	42, 287, 439, 466, 670
NlaIII	CATG	7 cut(s)	340, 481, 502, 518, 551, 769, 1110
NlaIV	GGNNCC	5 cut(s)	115, 375, 672, 914, 1098
NspI	RCATGY	3 cut(s)	481, 502, 518
PaeI	GCATGC	1 cut(s)	502
PaeR7I	CTCGAG	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	17
PciI	ACATGT	1 cut(s)	477
PctI	GAATGC	1 cut(s)	928
PfeI	GAWTC	3 cut(s)	269, 451, 1088
PflMI	CCANNNNNTGG	2 cut(s)	463, 869
PleI	GAGTC	3 cut(s)	31, 764, 867
PpsI	GAGTC	3 cut(s)	31, 764, 867
PscI	ACATGT	1 cut(s)	477
PsiI	TTATAA	1 cut(s)	140
Psp124BI	GAGCTC	2 cut(s)	171, 204
PspFI	CCCAGC	1 cut(s)	965
PspN4I	GGNNCC	5 cut(s)	115, 375, 672, 914, 1098
PspPI	GGNCC	3 cut(s)	114, 208, 373
PspXI	VCTCGAGB	1 cut(s)	203
PsuI	RGATCY	3 cut(s)	287, 439, 670
RsaI	GTAC	2 cut(s)	252, 764
RsaNI	GTAC	2 cut(s)	251, 763
SacI	GAGCTC	2 cut(s)	171, 204
SaqAI	TTAA	6 cut(s)	9, 303, 342, 351, 657, 732
Sau3AI	GATC	5 cut(s)	42, 287, 439, 466, 670
Sau96I	GGNCC	3 cut(s)	114, 208, 373
SchI	GAGTC	3 cut(s)	32, 764, 867
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	3 cut(s)	171, 204, 1101
SfaNI	GCATC	3 cut(s)	298, 601, 940
Sfr274I	CTCGAG	1 cut(s)	203
SinI	GGWCC	2 cut(s)	114, 373
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	9 cut(s)	133, 195, 300, 326, 458, 486, 492, 816, 1029
SseBI	AGGCCT	1 cut(s)	17
SsiI	CCGC	5 cut(s)	5, 147, 277, 616, 760
SspMI	CTAG	3 cut(s)	186, 603, 1005
SstI	GAGCTC	2 cut(s)	171, 204
StuI	AGGCCT	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	402
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	4 cut(s)	45, 204, 519, 723
TasI	AATT	9 cut(s)	133, 195, 300, 326, 458, 486, 492, 816, 1029
TfiI	GAWTC	3 cut(s)	269, 451, 1088
Tru1I	TTAA	6 cut(s)	9, 303, 342, 351, 657, 732
Tru9I	TTAA	6 cut(s)	9, 303, 342, 351, 657, 732
TscAI	CASTG	1 cut(s)	910
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	910
Van91I	CCANNNNNTGG	2 cut(s)	463, 869
VpaK11BI	GGWCC	2 cut(s)	114, 373
XapI	RAATTY	3 cut(s)	133, 326, 492
XceI	RCATGY	3 cut(s)	481, 502, 518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XhoI	CTCGAG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	3 cut(s)	186, 603, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.