Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015877

Physical Location & Seq

Genomic Coordinates Reverse (-)

2372317 .. 2373556

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGTAAGGAAGATGACCGAGGAGAAGAGTACCTGTTCAAGATTGTCCTAATCGGCGATTCCGCTGTCGGAAAATCGAACTTGCTGTCTCGATTTTCGCGGGATGAGTTCGACACGAACTCAAAAGCGACAATCGGAGTGGAATTTCAGACGCAGCTGGTTGAAATCGAAGGGAAAGAAGTGAAAGCTCAGATCTGGGACACTGCTGGTCAAGAGAGGTTTAGAGCTGTCACTTCTGCTTATTACAGAGGTGCTTTTGGTGCTCTCATCGTTTATGACATCACTCGAGGTGACACTTTCGAAAGCGTTAAACGTTGGCTCCAGGAACTCAACACTCATTGTGACACGGCAGTGGCACAAATGCTAGTTGGGAATAAATGCGATTTGGAGGATATAAGAGCGGTGAGTGTGGAGGAAGGGAAAGCTCTTGCGGAGGAAGAAGGATTGTTCTTTATGGAAACATCGGCTCTGGACGCCACAAATGTAGACAAAGCCTTTGAGATCGTTATCAGAGAGATCTTCAACAATGTCAGCCGCAAACTTCTCAACTCTGATGCTTACAAAGCAGAGCTTTCCGTTAACCGGGTCAGCCTTGTCAACAACCAAGATGGCTCCGAGAGCTCTTGGCGGAATCCGTCTTGTTGCTCCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

217

Amino Acids

24.32

Weight (kDa)

4.74

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 169	2.1e-14	ADP-ribosylation factor family
Ras	PF00071	14 - 174	2.6e-63	Ras family
Roc	PF08477	14 - 128	5e-35	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	46 - 172	4.2e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07410
fragaria_vesca	FvH4_2g17980
malus_domestica	MD05G1163800.v1.1
prunus_persica	Prupe.8G192300_v2.0.a1
pyrus_communis	pycom05g15300 pycom10g13250
rosa_chinensis	RchiOBHm_Chr6g0283281
rosa_laevigata	RLG00000012834
rosa_roxburghii	Rroxscaffold_7G00185600
rosa_rugosa	Rorug06G0152800
rosa_samantha	Rh6AG265300 Rh6BG268300 Rh6CG267600 Rh6DG261000
rosa_wichuraiana	Rw6G022990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	1 cut(s)	100
AciI	CCGC	6 cut(s)	63, 100, 401, 431, 535, 628
AclI	AACGTT	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	582
AgsI	TTSAA	3 cut(s)	40, 164, 523
AjnI	CCWGG	1 cut(s)	321
AleI	CACNNNNGTG	1 cut(s)	350
AluBI	AGCT	6 cut(s)	157, 188, 227, 425, 571, 621
AluI	AGCT	6 cut(s)	157, 188, 227, 425, 571, 621
Alw21I	GWGCWC	2 cut(s)	265, 623
Alw26I	GTCTC	1 cut(s)	93
Ama87I	CYCGRG	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	143
ArsI	GACNNNNNNTTYG	4 cut(s)	71, 103, 479, 511
AsuC2I	CCSGG	1 cut(s)	584
AsuHPI	GGTGA	2 cut(s)	302, 415
AsuII	TTCGAA	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	623
Bbv12I	GWGCWC	2 cut(s)	265, 623
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	584
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	365
BglII	AGATCT	2 cut(s)	192, 516
BisI	GCNGC	2 cut(s)	155, 535
BlsI	GCNGC	2 cut(s)	156, 536
Bme1390I	CCNGG	2 cut(s)	323, 584
BmeT110I	CYCGRG	1 cut(s)	285
BmiI	GGNNCC	2 cut(s)	320, 613
BmrFI	CCNGG	2 cut(s)	323, 584
BmsI	GCATC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	305
Bpu14I	TTCGAA	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	584
BsaBI	GATNNNNATC	1 cut(s)	506
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	506
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	506
BseLI	CCNNNNNNNGG	1 cut(s)	582
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	100
BsiHKAI	GWGCWC	2 cut(s)	265, 623
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	583
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	582
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	265, 623
Bsp143I	GATC	3 cut(s)	192, 501, 516
BspACI	CCGC	6 cut(s)	63, 100, 401, 431, 535, 628
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	320, 613
BspT104I	TTCGAA	1 cut(s)	300
BsrBI	CCGCTC	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	3 cut(s)	192, 501, 516
BssNI	GRCGYC	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	474
BstBI	TTCGAA	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	100
BstKTI	GATC	3 cut(s)	195, 504, 519
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	3 cut(s)	192, 501, 516
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 473, 563, 618
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	321, 582
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	2 cut(s)	192, 516
BstYI	RGATCY	2 cut(s)	192, 516
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	2 cut(s)	201, 357
BtsIMutI	CAGTG	2 cut(s)	201, 357
CseI	GACGC	2 cut(s)	160, 482
Csp6I	GTAC	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	3 cut(s)	194, 503, 518
DpnII	GATC	3 cut(s)	192, 501, 516
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	643
Ecl136II	GAGCTC	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	621
Eco88I	CYCGRG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	623
FaiI	YATR	3 cut(s)	276, 395, 455
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	212
FauI	CCCGC	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	155, 535
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	623
Fsp4HI	GCNGC	2 cut(s)	155, 535
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	2 cut(s)	155, 535
GsuI	CTGGAG	1 cut(s)	305
HapII	CCGG	1 cut(s)	583
HgaI	GACGC	2 cut(s)	160, 482
Hin1I	GRCGYC	1 cut(s)	474
HincII	GTYRAC	2 cut(s)	580, 598
HindII	GTYRAC	2 cut(s)	580, 598
HinfI	GANTC	2 cut(s)	59, 631
HpaI	GTTAAC	1 cut(s)	580
HpaII	CCGG	1 cut(s)	583
HphI	GGTGA	2 cut(s)	302, 415
Hpy166II	GTNNAC	3 cut(s)	487, 580, 598
Hpy188I	TCNGA	7 cut(s)	71, 137, 150, 192, 512, 553, 616
Hpy188III	TCNNGA	5 cut(s)	40, 90, 212, 470, 648
Hpy8I	GTNNAC	3 cut(s)	487, 580, 598
HpyAV	CCTTC	3 cut(s)	164, 410, 434
HpyCH4IV	ACGT	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 473, 563, 618
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	313
Hsp92I	GRCGYC	1 cut(s)	474
KspAI	GTTAAC	1 cut(s)	580
Kzo9I	GATC	3 cut(s)	192, 501, 516
LmnI	GCTCC	3 cut(s)	324, 617, 650
LpnPI	CCDG	8 cut(s)	47, 143, 181, 192, 308, 335, 455, 596
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	3 cut(s)	229, 290, 341
MalI	GATC	3 cut(s)	194, 503, 518
MbiI	CCGCTC	1 cut(s)	401
MboI	GATC	3 cut(s)	192, 501, 516
MboII	GAAGA	4 cut(s)	23, 38, 449, 511
MflI	RGATCY	2 cut(s)	192, 516
MhlI	GDGCHC	2 cut(s)	265, 623
MluCI	AATT	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	7 cut(s)	14, 210, 242, 281, 382, 406, 427
MseI	TTAA	2 cut(s)	309, 579
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	2 cut(s)	65, 157
MspI	CCGG	1 cut(s)	583
MspR9I	CCNGG	2 cut(s)	323, 584
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	4 cut(s)	260, 473, 563, 618
NciI	CCSGG	1 cut(s)	584
NdeII	GATC	3 cut(s)	192, 501, 516
NlaIV	GGNNCC	2 cut(s)	320, 613
NmuCI	GTSAC	3 cut(s)	229, 290, 341
NspV	TTCGAA	1 cut(s)	300
OliI	CACNNNNGTG	1 cut(s)	350
PaeR7I	CTCGAG	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	59, 631
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	156, 536
Psp124BI	GAGCTC	1 cut(s)	623
Psp1406I	AACGTT	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	320, 613
PspXI	VCTCGAGB	1 cut(s)	285
PsuI	RGATCY	2 cut(s)	192, 516
PvuII	CAGCTG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	623
SaqAI	TTAA	2 cut(s)	309, 579
SatI	GCNGC	2 cut(s)	155, 535
Sau3AI	GATC	3 cut(s)	192, 501, 516
ScrFI	CCNGG	2 cut(s)	323, 584
SduI	GDGCHC	2 cut(s)	265, 623
SfaNI	GCATC	1 cut(s)	544
Sfr274I	CTCGAG	1 cut(s)	285
SfuI	TTCGAA	1 cut(s)	300
SlaI	CTCGAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	6 cut(s)	63, 100, 401, 431, 535, 628
SspMI	CTAG	1 cut(s)	365
SstI	GAGCTC	1 cut(s)	623
StyD4I	CCNGG	2 cut(s)	321, 582
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	6 cut(s)	77, 91, 111, 168, 286, 300
TaqII	GACCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	143
TauI	GCSGC	1 cut(s)	537
TfiI	GAWTC	2 cut(s)	59, 631
Tru1I	TTAA	2 cut(s)	309, 579
Tru9I	TTAA	2 cut(s)	309, 579
TscAI	CASTG	2 cut(s)	208, 357
TseFI	GTSAC	3 cut(s)	229, 290, 341
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	3 cut(s)	229, 290, 341
TspGWI	ACGGA	2 cut(s)	565, 624
TspRI	CASTG	2 cut(s)	208, 357
XapI	RAATTY	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.