Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015877

Physical Location & Seq

Genomic Coordinates Forward (+)

15405934 .. 15408427

Gene Structure 2494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCCGACGACGAAGCCGCAGGAGGAGAGGAGTACCTCTTCAAGGTGGTCCTCATCGGCGACTCCGCCGTCGGCAAGTCCAACCTCCTCTCCCGCTTCGCCAGGAACGAGTTCGATCAGAACTCCAAGGCTACAATCGGGGTCGAGTTTCAGACCCAGGCTGTGGAAATCGACGGCAAAGAGGTCAAGGCCCAGATCTGGGACACGGCGGGCCAAGAGCGCTTCAGGGCTGTGACCTCTGCTTATTACAGAGGCGCGGTTGGGGCGCTTGTGGTGTATGATATCAGTAGGAAGACTACTTTTGAGAGTGTGGAGCGCTGGCTCAATGAGCTTACTATGCATTGCGATACTGCGGTGGCAAAGATGTTGGTAGGCAATAAGTGTGACTTGGAGGATATTAGAGCTGTGACTATTGAAGACGGCAAAAGCCTTGCTGAAGAAAAGGGATTATTCTTCATGGAGACGTCTGCACTTGATGCTACTAATGTTCAGGAGGCCTTTGAGGTGGTAATCCGGGAGATTTACAACAATGTCAGCAGGAAAGTCCTGAATTCTGATTCTTACAAGGCTGAGCTGTCTGTTAATCGAGTAAGCCTGGTGAACAAGGCAGATTCAACGAAAAGTCGATGTTGTGGCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

214

Amino Acids

23.52

Weight (kDa)

4.89

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 173	3.9e-15	ADP-ribosylation factor family
Ras	PF00071	15 - 175	4.7e-64	Ras family
Roc	PF08477	15 - 129	8.5e-36	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	15 - 112	8e-06	50S ribosome-binding GTPase
GTP_EFTU	PF00009	47 - 174	6.1e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07410
fragaria_vesca	FvH4_2g17980
malus_domestica	MD05G1163800.v1.1
prunus_persica	Prupe.8G192300_v2.0.a1
pyrus_communis	pycom05g15300 pycom10g13250
rosa_chinensis	RchiOBHm_Chr6g0283281
rosa_laevigata	RLG00000012834
rosa_roxburghii	Rroxscaffold_7G00185600
rosa_rugosa	Rorug06G0152800
rosa_samantha	Rh6AG265300 Rh6BG268300 Rh6CG267600 Rh6DG261000
rosa_wichuraiana	Rw6G022990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AatII	GACGTC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccII	CGCG	1 cut(s)	257
AciI	CCGC	7 cut(s)	18, 66, 94, 209, 257, 353, 636
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	550
AcuI	CTGAAG	2 cut(s)	208, 456
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	1 cut(s)	35
AfeI	AGCGCT	2 cut(s)	221, 317
AfiI	CCNNNNNNNGG	4 cut(s)	43, 163, 198, 199
AgsI	TTSAA	3 cut(s)	43, 416, 615
AjnI	CCWGG	3 cut(s)	101, 156, 594
AluBI	AGCT	3 cut(s)	331, 404, 574
AluI	AGCT	3 cut(s)	331, 404, 574
Alw26I	GTCTC	1 cut(s)	455
Aor51HI	AGCGCT	2 cut(s)	221, 317
AoxI	GGCC	4 cut(s)	3, 189, 211, 495
ApoI	RAATTY	1 cut(s)	550
Asp700I	GAANNNNTTC	1 cut(s)	110
AspLEI	GCGC	4 cut(s)	222, 257, 268, 318
AspS9I	GGNCC	3 cut(s)	49, 190, 211
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	339, 372
BbsI	GAAGAC	2 cut(s)	299, 423
BceAI	ACGGC	4 cut(s)	53, 190, 222, 436
BciT130I	CCWGG	3 cut(s)	103, 158, 596
BcnI	CCSGG	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	455
BfoI	RGCGCY	3 cut(s)	223, 269, 319
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	1 cut(s)	18
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	4 cut(s)	103, 158, 515, 596
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	49, 190, 211
BmrFI	CCNGG	4 cut(s)	103, 158, 515, 596
BmsI	GCATC	1 cut(s)	466
BpiI	GAAGAC	2 cut(s)	299, 423
Bpu1102I	GCTNAGC	1 cut(s)	570
BpuMI	CCSGG	1 cut(s)	515
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	126, 156
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 163, 198, 199
Bse3DI	GCAATG	1 cut(s)	340
BseBI	CCWGG	3 cut(s)	103, 158, 596
BseDI	CCNNGG	2 cut(s)	126, 156
BseLI	CCNNNNNNNGG	4 cut(s)	43, 163, 198, 199
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	561
BseRI	GAGGAG	3 cut(s)	39, 44, 77
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	4 cut(s)	5, 191, 213, 497
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	4 cut(s)	43, 163, 198, 199
BsmAI	GTCTC	1 cut(s)	455
BsmBI	CGTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	4 cut(s)	5, 191, 213, 497
Bsp143I	GATC	2 cut(s)	115, 195
Bsp1720I	GCTNAGC	1 cut(s)	570
BspACI	CCGC	7 cut(s)	18, 66, 94, 209, 257, 353, 636
BspANI	GGCC	4 cut(s)	5, 191, 213, 497
BspCNI	CTCAG	1 cut(s)	562
BspFNI	CGCG	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	126, 156
BssMI	GATC	2 cut(s)	115, 195
BssNI	GRCGYC	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	3 cut(s)	103, 158, 596
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	2 cut(s)	211, 320
BstDEI	CTNAG	1 cut(s)	570
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstFNI	CGCG	1 cut(s)	257
BstH2I	RGCGCY	3 cut(s)	223, 269, 319
BstHHI	GCGC	4 cut(s)	222, 257, 268, 318
BstKTI	GATC	2 cut(s)	118, 198
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	2 cut(s)	115, 195
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 263, 328, 337, 476
BstNI	CCWGG	3 cut(s)	103, 158, 596
BstSCI	CCNGG	4 cut(s)	101, 156, 513, 594
BstUI	CGCG	1 cut(s)	257
BstV2I	GAAGAC	2 cut(s)	299, 423
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	4 cut(s)	5, 191, 213, 497
Cac8I	GCNNGC	2 cut(s)	211, 320
CfoI	GCGC	4 cut(s)	222, 257, 268, 318
Cfr13I	GGNCC	3 cut(s)	49, 190, 211
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	457
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	2 cut(s)	117, 197
DpnII	GATC	2 cut(s)	115, 195
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	126
Eco147I	AGGCCT	1 cut(s)	497
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	49
Eco47III	AGCGCT	2 cut(s)	221, 317
Eco57I	CTGAAG	2 cut(s)	208, 456
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	3 cut(s)	101, 156, 594
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	455
FaeI	CATG	1 cut(s)	460
FaiI	YATR	3 cut(s)	279, 338, 458
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	1 cut(s)	456
FauI	CCCGC	2 cut(s)	101, 202
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
GlaI	GCGC	4 cut(s)	221, 256, 267, 317
GluI	GCNGC	1 cut(s)	18
HaeII	RGCGCY	3 cut(s)	223, 269, 319
HaeIII	GGCC	4 cut(s)	5, 191, 213, 497
HapII	CCGG	1 cut(s)	514
HhaI	GCGC	4 cut(s)	222, 257, 268, 318
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	4 cut(s)	220, 255, 266, 316
HinP1I	GCGC	4 cut(s)	220, 255, 266, 316
HinfI	GANTC	3 cut(s)	62, 557, 611
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	1 cut(s)	610
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	3 cut(s)	120, 153, 556
Hpy188III	TCNNGA	2 cut(s)	491, 547
Hpy8I	GTNNAC	1 cut(s)	601
Hpy99I	CGWCG	4 cut(s)	11, 14, 74, 176
HpyCH4IV	ACGT	1 cut(s)	464
HpyCH4V	TGCA	2 cut(s)	340, 470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 263, 328, 337, 476
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	1 cut(s)	464
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	4 cut(s)	220, 255, 266, 316
Kzo9I	GATC	2 cut(s)	115, 195
LmnI	GCTCC	1 cut(s)	313
LweI	GCATC	1 cut(s)	466
MaeII	ACGT	1 cut(s)	464
MaeIII	GTNAC	3 cut(s)	232, 383, 406
MalI	GATC	2 cut(s)	117, 197
MboI	GATC	2 cut(s)	115, 195
MboII	GAAGA	5 cut(s)	31, 304, 428, 445, 449
MflI	RGATCY	1 cut(s)	195
MluCI	AATT	1 cut(s)	550
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	105
Mph1103I	ATGCAT	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	1 cut(s)	582
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	4 cut(s)	103, 158, 515, 596
MvaI	CCWGG	3 cut(s)	103, 158, 596
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	5 cut(s)	219, 263, 328, 337, 476
NciI	CCSGG	1 cut(s)	515
NdeII	GATC	2 cut(s)	115, 195
NlaIII	CATG	1 cut(s)	460
NmuCI	GTSAC	3 cut(s)	232, 383, 406
NsiI	ATGCAT	1 cut(s)	342
PceI	AGGCCT	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	557, 611
PflMI	CCANNNNNTGG	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	3 cut(s)	101, 156, 594
PspGI	CCWGG	3 cut(s)	101, 156, 594
PspPI	GGNCC	3 cut(s)	49, 190, 211
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	115, 195
Sau96I	GGNCC	3 cut(s)	49, 190, 211
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	4 cut(s)	103, 158, 515, 596
SfaNI	GCATC	1 cut(s)	466
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	1 cut(s)	550
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	7 cut(s)	18, 66, 94, 209, 257, 353, 636
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	4 cut(s)	101, 156, 513, 594
StyI	CCWWGG	1 cut(s)	126
TaiI	ACGT	1 cut(s)	467
TaqI	TCGA	5 cut(s)	114, 144, 171, 586, 625
TasI	AATT	1 cut(s)	550
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	557, 611
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TseFI	GTSAC	3 cut(s)	232, 383, 406
Tsp45I	GTSAC	3 cut(s)	232, 383, 406
TspDTI	ATGAA	1 cut(s)	445
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	49
XagI	CCTNNNNNAGG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	110
ZraI	GACGTC	1 cut(s)	465
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.