Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015877

Physical Location & Seq

Genomic Coordinates Reverse (-)

25029409 .. 25032069

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGGACGACGAAGCCGGAGGTGAGGAGTACTTGTTCAAGGTGGTCCTCATCGGCGACTCCGCCGTCGGCAAGTCCAACCTGCTGTCGCGGTTTGCTAGGAACGAGTTTGATCAAAACTCCAAGGCCACAATTGGGGTCGAGTTTCAGACCCAGGCCGTGGAAATCGACGGCAAAGAGGTCAAGGCCCAGATCTGGGACACGGCGGGACAAGAAAGGTTCCGGGCTGTGACGTCTGCTTACTACAGAGGCGCGGTGGGCGCGCTTGTGGTGTATGATATCAGTAGGAAGACTACTTTTGAGAGTGTGGAGCGCTGGCTTAATGAGCTTACCAGTACTCTTCTGCTTAGTTCTGGAGTGATACATGACATGTTTCATAAGATTATAATGCTTACAGATCTTATGATGCATTGTGATACTGCGGTGGCAAAGATGTTGGTAGGGAATAAGTGTGATTTGGAGGATATTAGAGATGTGTCCATTGAAGACGGTAAAAGCCTTGCGGAAGAAAAGGGACTATTCTTCATGGAGACTTCTGCACTTGATGCTACTAATGTTCAAGAGGCCTTTGAGGTTGTTATCCGGGAGATTTACAACAATGTCAGCAGGAAAGTCCTAAACTCTGATTCTTACAAGGCTGAGCTGTCTGTTAACCGAGTAACCCTGGTGAAAAATGGGGCAGATTCGACGAAATATCGGTGTTGTAGCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

237

Amino Acids

26.35

Weight (kDa)

4.91

Isoelectric Point (pI)

28.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 117	8.2e-11	ADP-ribosylation factor family
Ras	PF00071	14 - 113	7.5e-40	Ras family
Roc	PF08477	14 - 112	1.5e-31	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	130 - 198	4.1e-18	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07410
fragaria_vesca	FvH4_2g17980
malus_domestica	MD05G1163800.v1.1
prunus_persica	Prupe.8G192300_v2.0.a1
pyrus_communis	pycom05g15300 pycom10g13250
rosa_chinensis	RchiOBHm_Chr6g0283281
rosa_laevigata	RLG00000012834
rosa_roxburghii	Rroxscaffold_7G00185600
rosa_rugosa	Rorug06G0152800
rosa_samantha	Rh6AG265300 Rh6BG268300 Rh6CG267600 Rh6DG261000
rosa_wichuraiana	Rw6G022990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AasI	GACNNNNNNGTC	1 cut(s)	65
AatII	GACGTC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	90
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccII	CGCG	3 cut(s)	91, 254, 263
AciI	CCGC	8 cut(s)	5, 63, 91, 206, 254, 422, 503, 708
AcyI	GRCGYC	1 cut(s)	233
AfaI	GTAC	2 cut(s)	32, 337
AfeI	AGCGCT	1 cut(s)	314
AfiI	CCNNNNNNNGG	4 cut(s)	135, 160, 195, 196
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	3 cut(s)	40, 485, 560
AjnI	CCWGG	2 cut(s)	153, 663
AloI	GAACNNNNNNTCC	2 cut(s)	20, 52
AluBI	AGCT	2 cut(s)	328, 643
AluI	AGCT	2 cut(s)	328, 643
Alw26I	GTCTC	1 cut(s)	524
Aor51HI	AGCGCT	1 cut(s)	314
AoxI	GGCC	4 cut(s)	126, 156, 186, 564
AspLEI	GCGC	4 cut(s)	254, 263, 265, 315
AspS9I	GGNCC	2 cut(s)	46, 187
AsuC2I	CCSGG	2 cut(s)	224, 584
AsuHPI	GGTGA	2 cut(s)	35, 679
AvaII	GGWCC	1 cut(s)	46
BaeI	ACNNNNGTAYC	2 cut(s)	408, 441
BbsI	GAAGAC	2 cut(s)	296, 492
BceAI	ACGGC	4 cut(s)	50, 143, 187, 219
BciT130I	CCWGG	2 cut(s)	155, 665
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	224, 584
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	244
BfoI	RGCGCY	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	90
BglII	AGATCT	2 cut(s)	192, 397
BlpI	GCTNAGC	1 cut(s)	639
BmcAI	AGTACT	2 cut(s)	32, 337
Bme1390I	CCNGG	4 cut(s)	155, 224, 584, 665
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	46, 187
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	4 cut(s)	155, 224, 584, 665
BmsI	GCATC	2 cut(s)	396, 535
BpiI	GAAGAC	2 cut(s)	296, 492
BpmI	CTGGAG	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	639
BpuMI	CCSGG	2 cut(s)	224, 584
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	123, 153, 159, 663
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 160, 195, 196
Bse1I	ACTGG	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	155, 665
BseDI	CCNNGG	4 cut(s)	123, 153, 159, 663
BseLI	CCNNNNNNNGG	4 cut(s)	135, 160, 195, 196
BseMII	CTCAG	1 cut(s)	630
BseNI	ACTGG	1 cut(s)	333
BsePI	GCGCGC	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	522
Bsh1236I	CGCG	3 cut(s)	91, 254, 263
BshFI	GGCC	4 cut(s)	128, 158, 188, 566
BsiSI	CCGG	3 cut(s)	18, 223, 583
BslFI	GGGAC	3 cut(s)	212, 222, 528
BslI	CCNNNNNNNGG	4 cut(s)	135, 160, 195, 196
BsmAI	GTCTC	1 cut(s)	524
BsmFI	GGGAC	3 cut(s)	212, 222, 528
BsnI	GGCC	4 cut(s)	128, 158, 188, 566
Bsp143I	GATC	3 cut(s)	112, 192, 397
Bsp1720I	GCTNAGC	1 cut(s)	639
BspACI	CCGC	8 cut(s)	5, 63, 91, 206, 254, 422, 503, 708
BspANI	GGCC	4 cut(s)	128, 158, 188, 566
BspCNI	CTCAG	1 cut(s)	631
BspFNI	CGCG	3 cut(s)	91, 254, 263
BspLI	GGNNCC	1 cut(s)	221
BspMI	ACCTGC	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	4 cut(s)	123, 153, 159, 663
BssHII	GCGCGC	1 cut(s)	261
BssMI	GATC	3 cut(s)	112, 192, 397
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	155, 665
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	263, 317
BstDEI	CTNAG	2 cut(s)	347, 639
BstDSI	CCRYGG	1 cut(s)	159
BstFNI	CGCG	3 cut(s)	91, 254, 263
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	4 cut(s)	254, 263, 265, 315
BstKTI	GATC	3 cut(s)	115, 195, 400
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	3 cut(s)	112, 192, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	258, 260, 325, 545
BstNI	CCWGG	2 cut(s)	155, 665
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	4 cut(s)	153, 222, 582, 663
BstSFI	CTRYAG	1 cut(s)	244
BstUI	CGCG	3 cut(s)	91, 254, 263
BstV2I	GAAGAC	2 cut(s)	296, 492
BstX2I	RGATCY	2 cut(s)	192, 397
BstYI	RGATCY	2 cut(s)	192, 397
BsuRI	GGCC	4 cut(s)	128, 158, 188, 566
BtgI	CCRYGG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	263, 317
CfoI	GCGC	4 cut(s)	254, 263, 265, 315
Cfr13I	GGNCC	2 cut(s)	46, 187
Csp6I	GTAC	2 cut(s)	31, 336
CviAII	CATG	3 cut(s)	365, 370, 526
CviQI	GTAC	2 cut(s)	31, 336
DdeI	CTNAG	2 cut(s)	347, 639
DpnI	GATC	3 cut(s)	114, 194, 399
DpnII	GATC	3 cut(s)	112, 192, 397
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	2 cut(s)	20, 52
Eco130I	CCWWGG	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	566
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	46
Eco47III	AGCGCT	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	153, 663
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	368, 373, 529
FaiI	YATR	7 cut(s)	276, 366, 371, 378, 386, 404, 527
FaqI	GGGAC	3 cut(s)	212, 222, 528
FatI	CATG	3 cut(s)	364, 369, 525
FauI	CCCGC	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	112
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	4 cut(s)	253, 262, 264, 314
GsuI	CTGGAG	1 cut(s)	375
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	4 cut(s)	128, 158, 188, 566
HapII	CCGG	3 cut(s)	18, 223, 583
HhaI	GCGC	4 cut(s)	254, 263, 265, 315
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	3 cut(s)	368, 373, 529
Hin6I	GCGC	4 cut(s)	252, 261, 263, 313
HinP1I	GCGC	4 cut(s)	252, 261, 263, 313
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	3 cut(s)	59, 626, 683
HpaI	GTTAAC	1 cut(s)	652
HpaII	CCGG	3 cut(s)	18, 223, 583
HphI	GGTGA	2 cut(s)	35, 679
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	2 cut(s)	150, 625
Hpy188III	TCNNGA	2 cut(s)	354, 560
Hpy8I	GTNNAC	1 cut(s)	652
Hpy99I	CGWCG	4 cut(s)	14, 71, 173, 691
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	2 cut(s)	409, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	258, 260, 325, 545
HpyF3I	CTNAG	2 cut(s)	347, 639
HpySE526I	ACGT	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	368, 373, 529
HspAI	GCGC	4 cut(s)	252, 261, 263, 313
Ksp22I	TGATCA	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	652
Kzo9I	GATC	3 cut(s)	112, 192, 397
LmnI	GCTCC	1 cut(s)	310
LweI	GCATC	2 cut(s)	396, 535
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	229, 658
MalI	GATC	3 cut(s)	114, 194, 399
MboI	GATC	3 cut(s)	112, 192, 397
MboII	GAAGA	5 cut(s)	301, 332, 497, 514, 518
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	2 cut(s)	192, 397
MluCI	AATT	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	8 cut(s)	14, 19, 59, 172, 242, 454, 556, 565
Mph1103I	ATGCAT	1 cut(s)	411
MseI	TTAA	2 cut(s)	321, 651
MspI	CCGG	3 cut(s)	18, 223, 583
MspR9I	CCNGG	4 cut(s)	155, 224, 584, 665
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	2 cut(s)	155, 665
MvnI	CGCG	3 cut(s)	91, 254, 263
MwoI	GCNNNNNNNGC	4 cut(s)	258, 260, 325, 545
NciI	CCSGG	2 cut(s)	224, 584
NdeII	GATC	3 cut(s)	112, 192, 397
NlaIII	CATG	3 cut(s)	368, 373, 529
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	1 cut(s)	373
PauI	GCGCGC	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	566
PciI	ACATGT	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	626, 683
PflMI	CCANNNNNTGG	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	582
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PscI	ACATGT	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	386
Psp6I	CCWGG	2 cut(s)	153, 663
PspGI	CCWGG	2 cut(s)	153, 663
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	2 cut(s)	46, 187
PsuI	RGATCY	2 cut(s)	192, 397
PteI	GCGCGC	1 cut(s)	261
RsaI	GTAC	2 cut(s)	32, 337
RsaNI	GTAC	2 cut(s)	31, 336
SaqAI	TTAA	2 cut(s)	321, 651
Sau3AI	GATC	3 cut(s)	112, 192, 397
Sau96I	GGNCC	2 cut(s)	46, 187
ScaI	AGTACT	2 cut(s)	32, 337
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	4 cut(s)	155, 224, 584, 665
SetI	ASST	9 cut(s)	25, 45, 84, 183, 221, 236, 330, 576, 645
SfaNI	GCATC	2 cut(s)	396, 535
SfcI	CTRYAG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	1 cut(s)	132
SseBI	AGGCCT	1 cut(s)	566
SsiI	CCGC	8 cut(s)	5, 63, 91, 206, 254, 422, 503, 708
SspMI	CTAG	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	566
StyD4I	CCNGG	4 cut(s)	153, 222, 582, 663
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	3 cut(s)	141, 168, 686
TasI	AATT	1 cut(s)	132
TatI	WGTACW	2 cut(s)	30, 335
TfiI	GAWTC	2 cut(s)	626, 683
Tru1I	TTAA	2 cut(s)	321, 651
Tru9I	TTAA	2 cut(s)	321, 651
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	365, 514
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	46
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	1 cut(s)	99
ZraI	GACGTC	1 cut(s)	234
ZrmI	AGTACT	2 cut(s)	32, 337
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.