Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015877

Physical Location & Seq

Genomic Coordinates Forward (+)

29283233 .. 29285545

Gene Structure 2313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1163800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAGGAAGGGCTCGGAGGAGAGGAGTACTTGTTCAAGGTGGTGCTAATAGGCGACTCGGCGGTGGGCAAGTCCAACCTCCTCTCGCGGTTCGCCCGCAACGAGTTCGACCCCAACAACAAGGCCACAATCGGGGTCGAGTTTCTGACCCAAGAATTGGAAATCGACGGCAAAATGATCAAAGCCCAGATCTGGGACACCGCCGGCCAAGAGCGCTTCAGGGCCGTCACCTCTGCTTACTACAGAGGCGCTGTTGGCGCCCTGATTGTCTACGATATCAGTAGGAAGACCACCTTCGAGAGCGTCAAGCGCTGGCTCGATGAGCTTACCACTCATTGTGAAACAACGGTAGCACGGATGCTGGTAGGAAACAAGTGTGATTTGGAGGACATTAGGGCTGTGAGCTTGGAAGAAGGCAAAAACCTTGCTGAGGAAGAAGGGCTATTCTTCATGGAGACTTCTGCACTGAATTCCACCAACGTTCAAACGGCTTTTGAGATAGTAATCCGGGAGATTTACAACAACGTCAGCCGCAAAGTCCTAAATTCTGATTCCTACAAGGCCGAGTTGTCTGTGAACCGAGTAAGCCTGATGAAAAACGGGGCAGACTCGAAAAGCCGGATGAATCTCTCTTGTTGCGGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.96

Weight (kDa)

5.07

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 169	4.1e-14	ADP-ribosylation factor family
Ras	PF00071	13 - 173	2.7e-63	Ras family
Roc	PF08477	13 - 127	2.1e-35	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07410
fragaria_vesca	FvH4_2g17980
malus_domestica	MD05G1163800.v1.1
prunus_persica	Prupe.8G192300_v2.0.a1
pyrus_communis	pycom05g15300 pycom10g13250
rosa_chinensis	RchiOBHm_Chr6g0283281
rosa_laevigata	RLG00000012834
rosa_roxburghii	Rroxscaffold_7G00185600
rosa_rugosa	Rorug06G0152800
rosa_samantha	Rh6AG265300 Rh6BG268300 Rh6CG267600 Rh6DG261000
rosa_wichuraiana	Rw6G022990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	88
AciI	CCGC	6 cut(s)	62, 88, 97, 201, 532, 639
AclI	AACGTT	1 cut(s)	480
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	469, 544
AcuI	CTGAAG	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	1 cut(s)	29
AfeI	AGCGCT	2 cut(s)	215, 311
AfiI	CCNNNNNNNGG	5 cut(s)	132, 157, 192, 193, 430
AgsI	TTSAA	2 cut(s)	37, 485
AloI	GAACNNNNNNTCC	2 cut(s)	17, 49
AluBI	AGCT	2 cut(s)	325, 405
AluI	AGCT	2 cut(s)	325, 405
Alw26I	GTCTC	1 cut(s)	449
Aor51HI	AGCGCT	2 cut(s)	215, 311
AoxI	GGCC	4 cut(s)	123, 205, 222, 561
ApoI	RAATTY	2 cut(s)	469, 544
AspLEI	GCGC	4 cut(s)	216, 251, 260, 312
AspS9I	GGNCC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	293
BbvCI	CCTCAGC	1 cut(s)	429
BceAI	ACGGC	3 cut(s)	184, 209, 504
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	241
BfoI	RGCGCY	4 cut(s)	217, 252, 261, 313
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	1 cut(s)	532
BlsI	GCNGC	1 cut(s)	533
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	5 cut(s)	132, 157, 192, 193, 430
Bse118I	RCCGGY	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	503
BseGI	GGATG	2 cut(s)	363, 627
BseJI	GATNNNNATC	1 cut(s)	503
BseLI	CCNNNNNNNGG	5 cut(s)	132, 157, 192, 193, 430
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	3 cut(s)	33, 38, 71
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	4 cut(s)	125, 207, 224, 563
BshNI	GGYRCC	1 cut(s)	257
BsiSI	CCGG	3 cut(s)	204, 508, 619
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	5 cut(s)	132, 157, 192, 193, 430
BsmAI	GTCTC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	4 cut(s)	125, 207, 224, 563
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	177, 189
BspACI	CCGC	6 cut(s)	62, 88, 97, 201, 532, 639
BspANI	GGCC	4 cut(s)	125, 207, 224, 563
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssMI	GATC	2 cut(s)	177, 189
BssNI	GRCGYC	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	349
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	3 cut(s)	97, 205, 314
BstDEI	CTNAG	1 cut(s)	429
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	363, 627
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	4 cut(s)	217, 252, 261, 313
BstHHI	GCGC	4 cut(s)	216, 251, 260, 312
BstKTI	GATC	2 cut(s)	180, 192
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	2 cut(s)	177, 189
BstMWI	GCNNNNNNNGC	5 cut(s)	213, 255, 257, 309, 322
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	241
BstUI	CGCG	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BsuRI	GGCC	4 cut(s)	125, 207, 224, 563
BtsCI	GGATG	2 cut(s)	363, 627
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	3 cut(s)	97, 205, 314
CfoI	GCGC	4 cut(s)	216, 251, 260, 312
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	451
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	429
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	2 cut(s)	179, 191
DpnII	GATC	2 cut(s)	177, 189
EaeI	YGGCCR	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	277
Eco47III	AGCGCT	2 cut(s)	215, 311
Eco57I	CTGAAG	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	469
EcoRV	GATATC	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	15
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
FaeI	CATG	1 cut(s)	454
FaiI	YATR	1 cut(s)	452
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	450
FauI	CCCGC	1 cut(s)	104
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	532
FokI	GGATG	2 cut(s)	370, 634
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	532
GlaI	GCGC	4 cut(s)	215, 250, 259, 311
GluI	GCNGC	1 cut(s)	532
HaeII	RGCGCY	4 cut(s)	217, 252, 261, 313
HaeIII	GGCC	4 cut(s)	125, 207, 224, 563
HapII	CCGG	3 cut(s)	204, 508, 619
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	4 cut(s)	216, 251, 260, 312
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	454
Hin6I	GCGC	4 cut(s)	214, 249, 258, 310
HinP1I	GCGC	4 cut(s)	214, 249, 258, 310
HinfI	GANTC	4 cut(s)	56, 551, 608, 625
HpaII	CCGG	3 cut(s)	204, 508, 619
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	271, 577
Hpy188I	TCNGA	3 cut(s)	17, 147, 550
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	2 cut(s)	271, 577
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	304, 407, 431
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	480, 525
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	213, 255, 257, 309, 322
HpyF3I	CTNAG	1 cut(s)	429
HpySE526I	ACGT	2 cut(s)	480, 525
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	454
HspAI	GCGC	4 cut(s)	214, 249, 258, 310
KasI	GGCGCC	1 cut(s)	257
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	177, 189
LweI	GCATC	1 cut(s)	348
MaeII	ACGT	2 cut(s)	480, 525
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	179, 191
MboI	GATC	2 cut(s)	177, 189
MboII	GAAGA	4 cut(s)	298, 422, 439, 446
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	155, 469, 544
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	2 cut(s)	50, 602
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	8 cut(s)	11, 16, 89, 92, 239, 241, 379, 424
MroNI	GCCGGC	1 cut(s)	203
MspI	CCGG	3 cut(s)	204, 508, 619
MspR9I	CCNGG	1 cut(s)	509
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	5 cut(s)	213, 255, 257, 309, 322
NaeI	GCCGGC	1 cut(s)	205
NarI	GGCGCC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	509
NdeII	GATC	2 cut(s)	177, 189
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	1 cut(s)	259
NmeAIII	GCCGAG	2 cut(s)	38, 589
NmuCI	GTSAC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	551, 625
PflMI	CCANNNNNTGG	1 cut(s)	157
PfoI	TCCNGGA	1 cut(s)	507
PkrI	GCNGC	1 cut(s)	533
PleI	GAGTC	2 cut(s)	50, 602
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	2 cut(s)	50, 602
Psp1406I	AACGTT	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	189
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SatI	GCNGC	1 cut(s)	532
Sau3AI	GATC	2 cut(s)	177, 189
Sau96I	GGNCC	1 cut(s)	222
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	2 cut(s)	50, 602
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	9 cut(s)	42, 81, 233, 296, 327, 407, 426, 483, 528
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	241
SfoI	GGCGCC	1 cut(s)	259
Sse9I	AATT	3 cut(s)	155, 469, 544
SsiI	CCGC	6 cut(s)	62, 88, 97, 201, 532, 639
SspDI	GGCGCC	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	483, 528
TaqI	TCGA	6 cut(s)	108, 138, 165, 297, 318, 611
TasI	AATT	3 cut(s)	155, 469, 544
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	1 cut(s)	534
TfiI	GAWTC	2 cut(s)	551, 625
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	439, 608, 638
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	1 cut(s)	471
Van91I	CCANNNNNTGG	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	2 cut(s)	469, 544
XmiI	GTMKAC	1 cut(s)	270
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.