Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014130

Physical Location & Seq

Genomic Coordinates Reverse (-)

2576444 .. 2578276

Gene Structure 1833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGATGATGAGGAAACCGGACATTACTACGATCAGAGACAAAGGCAAGCCAAATCATGCATGTGGTGGTAATAACAACAAACCGAAGCTAAGAAAAGGACTTTGGTCGCCTGATGAAGATGAGAAGCTGATAAGATACATGTTGACTAATGGACAAGGATGTTGGAGTGACATCGCTAGAAATGCTGGTCTTTTACGTTGTGGTAAAAGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTTAAACGTGGATCCTTCTCTCCTCAGGAGGAGGATCTCATCTTCCATTTGCATTCCATTCTTGGTAACAGGTGGTCTCAAATAGCTACTCGGCTTCCAGGTAGAACAGACAACGAGATCAAAAACTTTTGGAACTCGACATTGAAGAAGCGGCTTAAGAACAACAGCAACAACAATACTTCATCAGGATCATCACCTAACAATAGTAATAGTAATTCCTTGGACCCAAGAGATCAACATGTGGATATGGGAGGCAACTCAACTTCATTGATGGATGACTATCATCATGATGAAAACATGATGACAGTGGGGAACACCATGCGCATGGACTCTTCCTCCCCATTCAATGTTGGACCAATGGTTAATAGTGTGGGCTTAAACCAACTTTATGATCCCTTGATGATATCAGTGCCGGATAACGGATATCACCAAATGGGAAACACAGTGAATGTGTTCAGCGTTAATGGTTTAGGAGATTATGGAAACACAATTCTTGATCCAATTAGCAAGAGAGTATCAGTAGAAGGTGATGATTGGTTCATTCCCCCCTCGGAGAATACCAACGTCATTGCTTGTAGTACAAGCAACAACCTAAACTTACAGGCCCTTGATCCTTGCTTCAATAGCAAAAATCTTTGTCATTCAGAAAGCTTCAAGGTAGGGAATGTGTTGGGGATAGAGAATGGTTCTTGGGAAATAGAAAACCCTAAAATCGGAGATTGGGATTTGGATGGTCTCATCGATAACAACTCTTCTTTTCCCTTCCTTGATTTCCAAGTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

343

Amino Acids

38.42

Weight (kDa)

5.77

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	32 - 79	7.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	35 - 94	9.7e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	85 - 129	8.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	88 - 137	2.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08500
fragaria_vesca	FvH4_7g01020
malus_domestica	MD02G1312700.v1.1 MD07G1010500.v1.1
prunus_persica	Prupe.2G012800_v2.0.a1
pyrus_communis	pycom02g26240 pycom07g00860
rosa_chinensis	RchiOBHm_Chr1g0315931
rosa_laevigata	RLG00000030722
rosa_multiflora	Rmu_ssc0000154.1_g000025
rosa_roxburghii	Rroxscaffold_4G00331300
rosa_rugosa	Rorug01G0007100
rosa_samantha	Rh1AG017900 Rh1BG010900 Rh1CG015200 Rh1DG010900
rosa_wichuraiana	Rw1G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	569
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	8 cut(s)	233, 252, 265, 288, 442, 632, 737, 851
AfaI	GTAC	1 cut(s)	826
AfiI	CCNNNNNNNGG	2 cut(s)	665, 959
AflII	CTTAAG	1 cut(s)	401
AflIII	ACRYGT	2 cut(s)	138, 484
AgsI	TTSAA	4 cut(s)	391, 592, 868, 901
AjnI	CCWGG	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AluBI	AGCT	4 cut(s)	88, 127, 332, 897
AluI	AGCT	4 cut(s)	88, 127, 332, 897
Alw26I	GTCTC	3 cut(s)	30, 327, 986
AlwI	GGATC	8 cut(s)	233, 252, 265, 288, 442, 632, 737, 851
AoxI	GGCC	2 cut(s)	239, 849
Asp700I	GAANNNNTTC	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	3 cut(s)	469, 599, 850
AsuHPI	GGTGA	3 cut(s)	432, 665, 785
AvaII	GGWCC	2 cut(s)	469, 599
AxyI	CCTNAGG	1 cut(s)	270
BamHI	GGATCC	1 cut(s)	257
BccI	CCATC	2 cut(s)	511, 971
BciT130I	CCWGG	1 cut(s)	345
BcoDI	GTCTC	3 cut(s)	30, 327, 986
BfaI	CTAG	1 cut(s)	177
BfrI	CTTAAG	1 cut(s)	401
BisI	GCNGC	1 cut(s)	398
BlsI	GCNGC	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	2 cut(s)	469, 599
BmgT120I	GGNCC	3 cut(s)	469, 599, 850
BmiI	GGNNCC	2 cut(s)	259, 471
BmrFI	CCNGG	1 cut(s)	345
BoxI	GACNNNNGTC	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	987
BsaBI	GATNNNNATC	1 cut(s)	525
BsaI	GGTCTC	2 cut(s)	327, 986
BsaJI	CCNNGG	2 cut(s)	465, 795
BsaWI	WCCGGW	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	2 cut(s)	665, 959
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	813
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	345
BseCI	ATCGAT	1 cut(s)	987
BseDI	CCNNGG	2 cut(s)	465, 795
BseGI	GGATG	3 cut(s)	164, 526, 982
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	665, 959
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	1 cut(s)	284
BseRI	GAGGAG	2 cut(s)	258, 290
BshFI	GGCC	2 cut(s)	241, 851
BshVI	ATCGAT	1 cut(s)	987
BsiSI	CCGG	2 cut(s)	17, 659
BslI	CCNNNNNNNGG	2 cut(s)	665, 959
BsmAI	GTCTC	3 cut(s)	30, 327, 986
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	2 cut(s)	241, 851
Bso31I	GGTCTC	2 cut(s)	327, 986
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	2 cut(s)	241, 851
BspCNI	CTCAG	1 cut(s)	283
BspDI	ATCGAT	1 cut(s)	987
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	259, 471
BspPI	GGATC	8 cut(s)	233, 252, 265, 288, 442, 632, 737, 851
BspTI	CTTAAG	1 cut(s)	401
BspTNI	GGTCTC	2 cut(s)	327, 986
BsrDI	GCAATG	1 cut(s)	813
BssECI	CCNNGG	2 cut(s)	465, 795
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	553, 691
Bst6I	CTCTTC	2 cut(s)	583, 1003
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	89, 270
BstF5I	GGATG	3 cut(s)	164, 526, 982
BstHHI	GCGC	1 cut(s)	570
BstMAI	GTCTC	3 cut(s)	30, 327, 986
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 870
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	3 cut(s)	63, 142, 488
BstPAI	GACNNNNGTC	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	343
BstX2I	RGATCY	2 cut(s)	257, 280
BstXI	CCANNNNNNTGG	1 cut(s)	571
BstYI	RGATCY	2 cut(s)	257, 280
Bsu15I	ATCGAT	1 cut(s)	987
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	241, 851
BsuTUI	ATCGAT	1 cut(s)	987
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	164, 526, 982
BtsIMutI	CAGTG	3 cut(s)	558, 660, 696
Cac8I	GCNNGC	1 cut(s)	47
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	3 cut(s)	469, 599, 850
ClaI	ATCGAT	1 cut(s)	987
Csp6I	GTAC	1 cut(s)	825
CviAII	CATG	8 cut(s)	56, 60, 139, 485, 533, 544, 565, 571
CviQI	GTAC	1 cut(s)	825
DdeI	CTNAG	2 cut(s)	89, 270
Eam1104I	CTCTTC	2 cut(s)	583, 1003
EarI	CTCTTC	2 cut(s)	583, 1003
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	241
Eco31I	GGTCTC	2 cut(s)	327, 986
Eco32I	GATATC	2 cut(s)	651, 671
Eco47I	GGWCC	2 cut(s)	469, 599
Eco81I	CCTNAGG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	850
EcoRII	CCWGG	1 cut(s)	343
EcoRV	GATATC	2 cut(s)	651, 671
EcoT14I	CCWWGG	1 cut(s)	465
EcoT22I	ATGCAT	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	8 cut(s)	59, 63, 142, 488, 536, 547, 568, 574
FatI	CATG	8 cut(s)	55, 59, 138, 484, 532, 543, 564, 570
Fnu4HI	GCNGC	1 cut(s)	398
FokI	GGATG	3 cut(s)	171, 533, 989
Fsp4HI	GCNGC	1 cut(s)	398
FspAI	RTGCGCAY	1 cut(s)	569
FspBI	CTAG	1 cut(s)	177
FspI	TGCGCA	1 cut(s)	569
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	1 cut(s)	398
HaeIII	GGCC	2 cut(s)	241, 851
HapII	CCGG	2 cut(s)	17, 659
HhaI	GCGC	1 cut(s)	570
Hin1II	CATG	8 cut(s)	59, 63, 142, 488, 536, 547, 568, 574
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	895
HinfI	GANTC	1 cut(s)	575
HpaII	CCGG	2 cut(s)	17, 659
HphI	GGTGA	3 cut(s)	432, 665, 785
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	4 cut(s)	35, 799, 892, 962
Hpy188III	TCNNGA	4 cut(s)	272, 432, 533, 740
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	4 cut(s)	227, 271, 764, 1018
HpyCH4III	ACNGT	2 cut(s)	553, 691
HpyCH4IV	ACGT	3 cut(s)	196, 253, 810
HpyCH4V	TGCA	2 cut(s)	59, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 870
HpyF3I	CTNAG	2 cut(s)	89, 270
HpySE526I	ACGT	3 cut(s)	196, 253, 810
Hsp92II	CATG	8 cut(s)	59, 63, 142, 488, 536, 547, 568, 574
HspAI	GCGC	1 cut(s)	568
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	3 cut(s)	196, 253, 810
MaeIII	GTNAC	2 cut(s)	167, 311
MboII	GAAGA	5 cut(s)	128, 280, 403, 570, 990
MflI	RGATCY	2 cut(s)	257, 280
MluCI	AATT	4 cut(s)	229, 460, 735, 747
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	2 cut(s)	143, 577
MnlI	CCTC	8 cut(s)	3, 231, 268, 271, 279, 491, 592, 805
Mph1103I	ATGCAT	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	698
MseI	TTAA	5 cut(s)	249, 402, 609, 623, 708
MslI	CAYNNNNRTG	3 cut(s)	60, 534, 569
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	2 cut(s)	17, 659
MspR9I	CCNGG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	182, 870
NlaIII	CATG	8 cut(s)	59, 63, 142, 488, 536, 547, 568, 574
NlaIV	GGNNCC	2 cut(s)	259, 471
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	167
NsbI	TGCGCA	1 cut(s)	569
NsiI	ATGCAT	1 cut(s)	61
NspI	RCATGY	3 cut(s)	63, 142, 488
PagI	TCATGA	1 cut(s)	532
PceI	AGGCCT	1 cut(s)	241
PciI	ACATGT	2 cut(s)	138, 484
PctI	GAATGC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	698
PkrI	GCNGC	1 cut(s)	399
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
PscI	ACATGT	2 cut(s)	138, 484
PshAI	GACNNNNGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	259, 471
PspPI	GGNCC	3 cut(s)	469, 599, 850
PsuI	RGATCY	2 cut(s)	257, 280
RsaI	GTAC	1 cut(s)	826
RsaNI	GTAC	1 cut(s)	825
RseI	CAYNNNNRTG	3 cut(s)	60, 534, 569
SaqAI	TTAA	5 cut(s)	249, 402, 609, 623, 708
SatI	GCNGC	1 cut(s)	398
Sau96I	GGNCC	3 cut(s)	469, 599, 850
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	1 cut(s)	345
SinI	GGWCC	2 cut(s)	469, 599
SmiMI	CAYNNNNRTG	3 cut(s)	60, 534, 569
SmlI	CTYRAG	2 cut(s)	235, 401
SmoI	CTYRAG	2 cut(s)	235, 401
Sse9I	AATT	4 cut(s)	229, 460, 735, 747
SseBI	AGGCCT	1 cut(s)	241
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	1 cut(s)	177
StuI	AGGCCT	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	553, 691
TaiI	ACGT	3 cut(s)	199, 256, 813
TaqI	TCGA	3 cut(s)	383, 987, 1026
TasI	AATT	4 cut(s)	229, 460, 735, 747
TatI	WGTACW	1 cut(s)	824
TauI	GCSGC	1 cut(s)	400
Tru1I	TTAA	5 cut(s)	249, 402, 609, 623, 708
Tru9I	TTAA	5 cut(s)	249, 402, 609, 623, 708
TscAI	CASTG	3 cut(s)	558, 660, 696
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	5 cut(s)	129, 417, 501, 552, 775
TspGWI	ACGGA	1 cut(s)	681
TspRI	CASTG	3 cut(s)	558, 660, 696
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	469, 599
XceI	RCATGY	3 cut(s)	63, 142, 488
XmnI	GAANNNNTTC	1 cut(s)	698
XspI	CTAG	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.