Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014130

Physical Location & Seq

Genomic Coordinates Reverse (-)

24068734 .. 24071305

Gene Structure 2572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTGGAAAGAGTTGTCGTCTTCGTTGGATCATTACTTGAGGCCTGACCTCAAGCGTGGTGCATTTTCACCCCAAGAGGAAGAGCTTATCATCCATTTCCATTCAATTCTTGGCAATAGGTGGTCACAGATTGCTGCACGTCTTCCAGGACGAACGGACAATGAAATAAAGAATTTTTGGAATTCAGCCTTGAAGAAAAGGTTGAAAAATAACAATATGTCCACGTCCACATCGTCACCAAACGATAGTGATTCTTCAGATCCTAGAGATCATGTCGTTGGAGGGACGTTTATGCCCATGCAAGACCATGACATGATGACCATGTGCAACATGGACTCATCATCCTCATCATCCACATCCATGCAAGCCATGGCCGTTAACAGCAACCCATTGTTCAATCCTTTCTATATGCTTGACAATCGTTACGACATTGCCCATGCAGACGATATCGTCCTAAGTCCCACATGCTTCCCACACTTACCAAACCTTGAAGTTAATCAGGAGCATTATGGGGATTATGGAAACTTAGAGGGTGGTCATAAAATGGGGTTAGAAGGTGACCTTTTTCTTCTTCCACTCGAAAGCAGAAGCATTGAGAATAATCTGAATGGTCAGTTGGTAGCTGATAATATAAGCAAGAAGAGTATTAGCAACTACCACTTCCATAATAGTTGCTTTAATAACACGGAAATCGGTTTTAAAGTAGACGAGGAGGAGGACATGTTTGGATATGAAAATAATGTTGGACAAGGAGAAAACGTAAGAGTGGGAGAATGGGATTTCGAGGGTTTCATGCAGGATATTTCCTCCTTTCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

274

Amino Acids

30.97

Weight (kDa)

4.77

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	19 - 63	1.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	22 - 75	6.5e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08500
fragaria_vesca	FvH4_7g01020
malus_domestica	MD02G1312700.v1.1 MD07G1010500.v1.1
prunus_persica	Prupe.2G012800_v2.0.a1
pyrus_communis	pycom02g26240 pycom07g00860
rosa_chinensis	RchiOBHm_Chr1g0315931
rosa_laevigata	RLG00000030722
rosa_multiflora	Rmu_ssc0000154.1_g000025
rosa_roxburghii	Rroxscaffold_4G00331300
rosa_rugosa	Rorug01G0007100
rosa_samantha	Rh1AG017900 Rh1BG010900 Rh1CG015200 Rh1DG010900
rosa_wichuraiana	Rw1G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	449
AccI	GTMKAC	1 cut(s)	705
AclWI	GGATC	2 cut(s)	36, 254
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	172, 181
AcuI	CTGAAG	1 cut(s)	240
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	5 cut(s)	105, 193, 205, 397, 491
AjiI	CACGTC	2 cut(s)	140, 225
AjnI	CCWGG	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	4 cut(s)	599, 631, 726, 758
AluBI	AGCT	2 cut(s)	85, 623
AluI	AGCT	2 cut(s)	85, 623
AlwI	GGATC	2 cut(s)	36, 254
AoxI	GGCC	2 cut(s)	41, 372
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	2 cut(s)	172, 181
AsuHPI	GGTGA	3 cut(s)	60, 228, 569
BbsI	GAAGAC	2 cut(s)	12, 134
BbvI	GCAGC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	147
BfaI	CTAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	147
BmgBI	CACGTC	2 cut(s)	140, 225
BmrFI	CCNGG	1 cut(s)	147
BpiI	GAAGAC	2 cut(s)	12, 134
BpuEI	CTTGAG	2 cut(s)	35, 58
BsaJI	CCNNGG	1 cut(s)	369
BsaXI	ACNNNNNCTCC	4 cut(s)	707, 737, 744, 774
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	4 cut(s)	90, 341, 350, 356
BseMI	GCAATG	1 cut(s)	429
BseRI	GAGGAG	2 cut(s)	725, 728
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	43, 374
BslFI	GGGAC	2 cut(s)	298, 444
BsmFI	GGGAC	2 cut(s)	298, 444
BsnI	GGCC	2 cut(s)	43, 374
Bsp143I	GATC	3 cut(s)	28, 259, 268
Bsp19I	CCATGG	1 cut(s)	369
BspANI	GGCC	2 cut(s)	43, 374
BspPI	GGATC	2 cut(s)	36, 254
BspQI	GCTCTTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	429
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	3 cut(s)	28, 259, 268
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	147
Bst6I	CTCTTC	2 cut(s)	75, 635
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	2 cut(s)	455, 526
BstDSI	CCRYGG	1 cut(s)	369
BstEII	GGTNACC	1 cut(s)	557
BstF5I	GGATG	4 cut(s)	90, 341, 350, 356
BstKTI	GATC	3 cut(s)	31, 262, 271
BstMBI	GATC	3 cut(s)	28, 259, 268
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	2 cut(s)	468, 724
BstPI	GGTNACC	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	2 cut(s)	12, 134
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	43, 374
BtgI	CCRYGG	1 cut(s)	369
BtrI	CACGTC	2 cut(s)	140, 225
BtsCI	GGATG	4 cut(s)	90, 341, 350, 356
Cac8I	GCNNGC	1 cut(s)	366
CviJI	RGCY	6 cut(s)	43, 85, 188, 368, 374, 623
CviKI_1	RGCY	6 cut(s)	43, 85, 188, 368, 374, 623
DdeI	CTNAG	2 cut(s)	455, 526
DpnI	GATC	3 cut(s)	30, 261, 270
DpnII	GATC	3 cut(s)	28, 259, 268
DraI	TTTAAA	1 cut(s)	700
DrdI	GACNNNNNNGTC	1 cut(s)	449
DseDI	GACNNNNNNGTC	1 cut(s)	449
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	75, 635
EarI	CTCTTC	2 cut(s)	75, 635
Eco130I	CCWWGG	1 cut(s)	369
Eco147I	AGGCCT	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	145
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	2 cut(s)	298, 444
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	4 cut(s)	77, 328, 337, 343
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	43, 374
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	2 cut(s)	251, 335
HpaI	GTTAAC	1 cut(s)	379
HphI	GGTGA	3 cut(s)	60, 228, 569
Hpy166II	GTNNAC	4 cut(s)	222, 228, 379, 706
Hpy188I	TCNGA	2 cut(s)	259, 606
Hpy188III	TCNNGA	1 cut(s)	500
Hpy8I	GTNNAC	4 cut(s)	222, 228, 379, 706
HpyAV	CCTTC	1 cut(s)	548
HpyCH4IV	ACGT	4 cut(s)	139, 224, 287, 759
HpyCH4V	TGCA	7 cut(s)	62, 137, 301, 327, 364, 440, 796
HpyF3I	CTNAG	2 cut(s)	455, 526
HpySE526I	ACGT	4 cut(s)	139, 224, 287, 759
KspAI	GTTAAC	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	28, 259, 268
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	502
LpnPI	CCDG	5 cut(s)	57, 132, 159, 485, 782
Lsp1109I	GCAGC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	4 cut(s)	139, 224, 287, 759
MaeIII	GTNAC	4 cut(s)	123, 234, 422, 557
MalI	GATC	3 cut(s)	30, 261, 270
MboI	GATC	3 cut(s)	28, 259, 268
MboII	GAAGA	8 cut(s)	12, 92, 134, 205, 246, 560, 563, 652
MflI	RGATCY	1 cut(s)	259
MluCI	AATT	3 cut(s)	105, 172, 181
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	3 cut(s)	6, 259, 724
MseI	TTAA	5 cut(s)	378, 495, 678, 699, 820
MslI	CAYNNNNRTG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	3 cut(s)	28, 259, 268
NmuCI	GTSAC	3 cut(s)	123, 234, 557
NspI	RCATGY	2 cut(s)	468, 724
PceI	AGGCCT	1 cut(s)	43
PciI	ACATGT	1 cut(s)	720
PciSI	GCTCTTC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PscI	ACATGT	1 cut(s)	720
Psp6I	CCWGG	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	5 cut(s)	378, 495, 678, 699, 820
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	3 cut(s)	28, 259, 268
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	37, 50
SmoI	CTYRAG	2 cut(s)	37, 50
Sse9I	AATT	3 cut(s)	105, 172, 181
SseBI	AGGCCT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	369
TaiI	ACGT	4 cut(s)	142, 227, 290, 762
TaqI	TCGA	2 cut(s)	579, 783
TasI	AATT	3 cut(s)	105, 172, 181
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	5 cut(s)	378, 495, 678, 699, 820
Tru9I	TTAA	5 cut(s)	378, 495, 678, 699, 820
TseFI	GTSAC	3 cut(s)	123, 234, 557
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	3 cut(s)	123, 234, 557
TspDTI	ATGAA	3 cut(s)	177, 747, 781
TspGWI	ACGGA	2 cut(s)	170, 701
XapI	RAATTY	2 cut(s)	172, 181
XceI	RCATGY	2 cut(s)	468, 724
XcmI	CCANNNNNNNNNTGG	3 cut(s)	107, 328, 367
XmiI	GTMKAC	1 cut(s)	705
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.