Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014130

Physical Location & Seq

Genomic Coordinates Reverse (-)

36845365 .. 36848823

Gene Structure 3459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1312700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAGAAAGCCAGAGTCTATGGGAAAAGACGATGTCGGCGGAGCGAAAACTATTAGCAAGAAGAAGATGATGATGAACAAGCTTAGGAAGGGGTTATGGTCACCGGAGGAAGATGAGAAGCTGATGAGGTACATGTTAACCAGTGGACAAGGCTGTTGGAGTGACATTGCAAGAAATGCTGGTCTCCAAAGATGCGGAAAGAGTTGTCGTCTTCGTTGGATCAATTACTTGAGGCCTGACCTCAAGCGTGGTGCATTTTCACCCCAAGAGGAAGAGCTTATCATCCATTTCCATTCAATTCTTGGCAATAGGTGGTCACAGATTGCTGCACGTCTTCCAGGACGAACGGACAATGAAATAAAGAATTTTTGGAATTCAGCCTTGAAGAAAAGGTTGAAAAATAACAATATGTCCACGTCCACATCGTCACCAAACGATAGTGATTCTCTAGATCCTAGAGATCATGTCGTTGGAGGGACATTTCTGCCCATGCAAGACCATGACATGATGACCATGTGCAACATGGACTCATCATCCTCATCATCCACATCCATGCAAGCCATGGCCGTTAACAGCAACACATTGTTCAATCCTTTCTATATGCTTGACAATCGTTACGACAAGGCCCATGCAGACGATATCGTCCTAAATCCCACGTGCTTCCCACACTTACCAAACCTTGAAGTTAATCAGGAGCATTATGGGGATTATGGAAACTTAGAGGGTGGTCATAAAATGGGGTTAGAAGGTGACCTTTTTCTTCCTCCACTCGAAAGCAGAAGCATTGAGAATAATCTGAATGGTCAGTTGGTAGCTGATAATATAAGCAAGAAGAGTATTAGCAACTACCACTTCCATAATAGTTGCTTTAATAACACGGAAATCGGCTTTAAAGTATATGAGGAGGAGGACATGTTTGGATATGGAAATAATGTTGGACAAGGAGAAAACGTAAGAGTGGGAGAATGGGATTTCGACGGTTTCATGCAAGATATTTCCTCCTTTCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

338

Amino Acids

38.26

Weight (kDa)

5.83

Isoelectric Point (pI)

53.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	30 - 77	2.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	33 - 92	1.3e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	83 - 127	2.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	86 - 139	9.4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08500
fragaria_vesca	FvH4_7g01020
malus_domestica	MD02G1312700.v1.1 MD07G1010500.v1.1
prunus_persica	Prupe.2G012800_v2.0.a1
pyrus_communis	pycom02g26240 pycom07g00860
rosa_chinensis	RchiOBHm_Chr1g0315931
rosa_laevigata	RLG00000030722
rosa_multiflora	Rmu_ssc0000154.1_g000025
rosa_roxburghii	Rroxscaffold_4G00331300
rosa_rugosa	Rorug01G0007100
rosa_samantha	Rh1AG017900 Rh1BG010900 Rh1CG015200 Rh1DG010900
rosa_wichuraiana	Rw1G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	641
AciI	CCGC	2 cut(s)	39, 195
AclWI	GGATC	2 cut(s)	227, 446
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	2 cut(s)	364, 373
AcvI	CACGTG	1 cut(s)	657
AfaI	GTAC	1 cut(s)	131
AflIII	ACRYGT	2 cut(s)	132, 912
AgsI	TTSAA	5 cut(s)	297, 385, 397, 589, 683
AjiI	CACGTC	2 cut(s)	332, 417
AjnI	CCWGG	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	791, 823
AluBI	AGCT	4 cut(s)	82, 121, 277, 815
AluI	AGCT	4 cut(s)	82, 121, 277, 815
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	227, 446
AoxI	GGCC	3 cut(s)	233, 564, 624
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	364, 373
AspS9I	GGNCC	1 cut(s)	625
AsuHPI	GGTGA	4 cut(s)	93, 252, 420, 761
BbrPI	CACGTG	1 cut(s)	657
BbsI	GAAGAC	2 cut(s)	203, 326
BbvI	GCAGC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	551
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	2 cut(s)	449, 456
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	339
BmgBI	CACGTC	2 cut(s)	332, 417
BmgT120I	GGNCC	1 cut(s)	625
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	182
BpiI	GAAGAC	2 cut(s)	203, 326
Bpu10I	CCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	2 cut(s)	227, 250
BsaAI	YACGTR	1 cut(s)	657
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	4 cut(s)	899, 929, 936, 966
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	4 cut(s)	282, 533, 542, 548
BseMI	GCAATG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	2 cut(s)	917, 920
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	235, 566, 626
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	3 cut(s)	235, 566, 626
Bso31I	GGTCTC	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	219, 451, 460
Bsp19I	CCATGG	1 cut(s)	561
BspACI	CCGC	2 cut(s)	39, 195
BspANI	GGCC	3 cut(s)	235, 566, 626
BspPI	GGATC	2 cut(s)	227, 446
BspQI	GCTCTTC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	3 cut(s)	219, 451, 460
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	980
Bst6I	CTCTTC	2 cut(s)	267, 827
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	657
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	83, 718
BstDSI	CCRYGG	1 cut(s)	561
BstEII	GGTNACC	2 cut(s)	99, 749
BstF5I	GGATG	4 cut(s)	282, 533, 542, 548
BstKTI	GATC	3 cut(s)	222, 454, 463
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	3 cut(s)	219, 451, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	2 cut(s)	136, 916
BstPI	GGTNACC	2 cut(s)	99, 749
BstSCI	CCNGG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	2 cut(s)	203, 326
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	235, 566, 626
BtgI	CCRYGG	1 cut(s)	561
BtrI	CACGTC	2 cut(s)	332, 417
BtsCI	GGATG	4 cut(s)	282, 533, 542, 548
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	558
Cfr13I	GGNCC	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	130
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	2 cut(s)	83, 718
DpnI	GATC	3 cut(s)	221, 453, 462
DpnII	GATC	3 cut(s)	219, 451, 460
DraI	TTTAAA	1 cut(s)	892
DrdI	GACNNNNNNGTC	1 cut(s)	641
DseDI	GACNNNNNNGTC	1 cut(s)	641
EaeI	YGGCCR	1 cut(s)	564
Eam1104I	CTCTTC	2 cut(s)	267, 827
EarI	CTCTTC	2 cut(s)	267, 827
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	561
Eco147I	AGGCCT	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	640
Eco72I	CACGTG	1 cut(s)	657
Eco91I	GGTNACC	2 cut(s)	99, 749
EcoO65I	GGTNACC	2 cut(s)	99, 749
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FalI	AAGNNNNNCTT	2 cut(s)	738, 770
FaqI	GGGAC	1 cut(s)	490
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	4 cut(s)	269, 520, 529, 535
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	2 cut(s)	449, 456
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	3 cut(s)	235, 566, 626
HapII	CCGG	1 cut(s)	104
HincII	GTYRAC	2 cut(s)	138, 571
HindII	GTYRAC	2 cut(s)	138, 571
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	14, 443, 527
HpaI	GTTAAC	2 cut(s)	138, 571
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	4 cut(s)	93, 252, 420, 761
Hpy166II	GTNNAC	5 cut(s)	138, 146, 414, 420, 571
Hpy188I	TCNGA	1 cut(s)	798
Hpy188III	TCNNGA	2 cut(s)	449, 692
Hpy8I	GTNNAC	5 cut(s)	138, 146, 414, 420, 571
Hpy99I	CGWCG	1 cut(s)	980
HpyAV	CCTTC	2 cut(s)	82, 740
HpyCH4III	ACNGT	1 cut(s)	980
HpyCH4IV	ACGT	4 cut(s)	331, 416, 656, 951
HpyCH4V	TGCA	8 cut(s)	170, 254, 329, 493, 519, 556, 632, 988
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	83, 718
HpySE526I	ACGT	4 cut(s)	331, 416, 656, 951
KspAI	GTTAAC	2 cut(s)	138, 571
Kzo9I	GATC	3 cut(s)	219, 451, 460
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	41, 694
LpnPI	CCDG	8 cut(s)	24, 117, 154, 165, 249, 324, 351, 677
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	2 cut(s)	449, 456
MaeII	ACGT	4 cut(s)	331, 416, 656, 951
MaeIII	GTNAC	6 cut(s)	99, 161, 315, 426, 614, 749
MalI	GATC	3 cut(s)	221, 453, 462
MboI	GATC	3 cut(s)	219, 451, 460
MboII	GAAGA	9 cut(s)	73, 76, 122, 203, 284, 326, 397, 752, 844
MflI	RGATCY	1 cut(s)	451
MluCI	AATT	4 cut(s)	223, 297, 364, 373
MlyI	GAGTC	2 cut(s)	23, 521
MmeI	TCCRAC	4 cut(s)	137, 197, 451, 916
MseI	TTAA	6 cut(s)	137, 570, 687, 870, 891, 1012
MslI	CAYNNNNRTG	1 cut(s)	551
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	561
NdeII	GATC	3 cut(s)	219, 451, 460
NmuCI	GTSAC	5 cut(s)	99, 161, 315, 426, 749
NspI	RCATGY	2 cut(s)	136, 916
PceI	AGGCCT	1 cut(s)	235
PciI	ACATGT	2 cut(s)	132, 912
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	443
PflFI	GACNNNGTC	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	2 cut(s)	22, 521
PmaCI	CACGTG	1 cut(s)	657
PmlI	CACGTG	1 cut(s)	657
PpsI	GAGTC	2 cut(s)	22, 521
Ppu21I	YACGTR	1 cut(s)	657
PscI	ACATGT	2 cut(s)	132, 912
Psp6I	CCWGG	1 cut(s)	337
PspCI	CACGTG	1 cut(s)	657
PspEI	GGTNACC	2 cut(s)	99, 749
PspGI	CCWGG	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	625
PsuI	RGATCY	1 cut(s)	451
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	551
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	6 cut(s)	137, 570, 687, 870, 891, 1012
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	3 cut(s)	219, 451, 460
Sau96I	GGNCC	1 cut(s)	625
SchI	GAGTC	2 cut(s)	23, 521
ScrFI	CCNGG	1 cut(s)	339
SfaNI	GCATC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	229, 242
SmoI	CTYRAG	2 cut(s)	229, 242
Sse9I	AATT	4 cut(s)	223, 297, 364, 373
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	2 cut(s)	39, 195
SspMI	CTAG	2 cut(s)	449, 456
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	980
TaiI	ACGT	4 cut(s)	334, 419, 659, 954
TaqI	TCGA	2 cut(s)	771, 975
TasI	AATT	4 cut(s)	223, 297, 364, 373
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	6 cut(s)	137, 570, 687, 870, 891, 1012
Tru9I	TTAA	6 cut(s)	137, 570, 687, 870, 891, 1012
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	5 cut(s)	99, 161, 315, 426, 749
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	5 cut(s)	99, 161, 315, 426, 749
TspDTI	ATGAA	3 cut(s)	89, 369, 973
TspGWI	ACGGA	2 cut(s)	362, 893
TspRI	CASTG	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	32
XapI	RAATTY	2 cut(s)	364, 373
XbaI	TCTAGA	1 cut(s)	448
XceI	RCATGY	2 cut(s)	136, 916
XcmI	CCANNNNNNNNNTGG	3 cut(s)	299, 520, 559
XspI	CTAG	2 cut(s)	449, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.