Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014130

Physical Location & Seq

Genomic Coordinates Forward (+)

1108699 .. 1111146

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G012800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCGAAAGCCAGAGTCTATGGGAAAAGAGGAGGGAGCAAACAATATTAACAAGAAGAAGAAGATGATACTGAGCAAGCTTAGGAAGGGGTTGTGGTCGCCTGAGGAAGATGAGAAGCTGATGAGGTACATGTTGACTAATGGACAAGGCTGTTGGAGTGACATTGCTAGAAATGCTGGTCTCCAAAGGTGTGGAAAGAGTTGCCGTCTTCGATGGATTAACTACTTGAGGCCTGACCTCAAGCGTGGTGCATTTTCACCCCAAGAGGAAGAACTTATCGTCCATTTCCATTCAATTCTTGGCAACAGGTGGTCACAGATTGCTGCACGTCTGCCAGGACGAACGGACAATGAAATAAAAAACTTTTGGAATTCTGCATTAAAGAAAAGGTTGAAAAAGAACAATATTTCGACGTCCTTATCATCACCAAACGATAGTGATTCATCAGAGCCTAGAGATGTCAACATTACTGGAGGGACGACGTTTATGCCCATGCATGACCATGACATGATGACCATGACCATGTACAACATGGATTCATCTTCCTCATCATCTGCATCCATGCAAGCCATGTTCGTCAACAGCAACACATTATTCGATCCCTTCTCCATGCTTGACCACCGCTATGACATGGCCCATGCAGATGCTACATTGAACGTTAATCCCACATGCTTAGCAAACTTACCAAATATTGGAGACCAGGGGTATTATGGGGATTGTGGAAACTTAGGGGCTGGCCATAAAATGGGGTTAGAAGGTGACCTTTGTGTTCCTGCACTTGAGAGTAGAAGCGTGGAGAGTAATGTGAATGGTCAAGTAGCTGAGAATATAAGCAAGACTATTAACAACCACTTCCATAATAATTGCTTCAATAACACGACGGAAATGATCGGGTTTAAAGTAGATGAGGACATGCTTGGGTTTGGAAATAATGGTCATGGAGAAAACTTGAGAATGGGAGAATGGGATTTTGAGGGTTTCATGCAAGATATATCCTCCTTTCTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

337

Amino Acids

37.76

Weight (kDa)

6.08

Isoelectric Point (pI)

54.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08500
fragaria_vesca	FvH4_7g01020
malus_domestica	MD02G1312700.v1.1 MD07G1010500.v1.1
prunus_persica	Prupe.2G012800_v2.0.a1
pyrus_communis	pycom02g26240 pycom07g00860
rosa_chinensis	RchiOBHm_Chr1g0315931
rosa_laevigata	RLG00000030722
rosa_multiflora	Rmu_ssc0000154.1_g000025
rosa_roxburghii	Rroxscaffold_4G00331300
rosa_rugosa	Rorug01G0007100
rosa_samantha	Rh1AG017900 Rh1BG010900 Rh1CG015200 Rh1DG010900
rosa_wichuraiana	Rw1G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	416
AccB7I	CCANNNNNTGG	2 cut(s)	692, 745
AciI	CCGC	1 cut(s)	622
AclI	AACGTT	1 cut(s)	657
AclWI	GGATC	1 cut(s)	593
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	1 cut(s)	370
AcyI	GRCGYC	1 cut(s)	413
AfaI	GTAC	2 cut(s)	128, 527
AfiI	CCNNNNNNNGG	2 cut(s)	692, 745
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	4 cut(s)	294, 394, 655, 871
AjiI	CACGTC	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	334, 699
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
AluBI	AGCT	3 cut(s)	79, 118, 821
AluI	AGCT	3 cut(s)	79, 118, 821
Alw26I	GTCTC	2 cut(s)	185, 690
AlwI	GGATC	1 cut(s)	593
AoxI	GGCC	3 cut(s)	230, 633, 736
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	3 cut(s)	249, 417, 770
AxyI	CCTNAGG	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	738
BbsI	GAAGAC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	189
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BciT130I	CCWGG	2 cut(s)	336, 701
BcoDI	GTCTC	2 cut(s)	185, 690
BfaI	CTAG	2 cut(s)	168, 453
BisI	GCNGC	1 cut(s)	324
BlpI	GCTNAGC	1 cut(s)	673
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	2 cut(s)	336, 701
BmgBI	CACGTC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	634
BmrFI	CCNGG	2 cut(s)	336, 701
BmsI	GCATC	2 cut(s)	566, 634
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	80
Bpu1102I	GCTNAGC	1 cut(s)	673
BpuEI	CTTGAG	4 cut(s)	224, 247, 800, 970
BsaHI	GRCGYC	1 cut(s)	413
BsaI	GGTCTC	2 cut(s)	185, 690
BsaJI	CCNNGG	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 745
Bse1I	ACTGG	1 cut(s)	475
Bse21I	CCTNAGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	336, 701
BseDI	CCNNGG	1 cut(s)	700
BseGI	GGATG	1 cut(s)	557
BseLI	CCNNNNNNNGG	2 cut(s)	692, 745
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	3 cut(s)	62, 93, 813
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	2 cut(s)	309, 759
BshFI	GGCC	3 cut(s)	232, 635, 738
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	2 cut(s)	692, 745
BsmAI	GTCTC	2 cut(s)	185, 690
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	3 cut(s)	232, 635, 738
Bso31I	GGTCTC	2 cut(s)	185, 690
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	2 cut(s)	598, 888
Bsp1720I	GCTNAGC	1 cut(s)	673
BspACI	CCGC	1 cut(s)	622
BspANI	GGCC	3 cut(s)	232, 635, 738
BspCNI	CTCAG	3 cut(s)	63, 94, 814
BspPI	GGATC	1 cut(s)	593
BspTNI	GGTCTC	2 cut(s)	185, 690
BsrDI	GCAATG	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	525
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	1 cut(s)	700
BssMI	GATC	2 cut(s)	598, 888
BssNI	GRCGYC	1 cut(s)	413
Bst2UI	CCWGG	2 cut(s)	336, 701
BstACI	GRCGYC	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	525
BstC8I	GCNNGC	3 cut(s)	77, 567, 736
BstDEI	CTNAG	7 cut(s)	71, 80, 102, 673, 727, 822, 1008
BstEII	GGTNACC	1 cut(s)	758
BstF5I	GGATG	1 cut(s)	557
BstKTI	GATC	2 cut(s)	601, 891
BstMAI	GTCTC	2 cut(s)	185, 690
BstMBI	GATC	2 cut(s)	598, 888
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	2 cut(s)	336, 701
BstNSI	RCATGY	3 cut(s)	133, 672, 916
BstPI	GGTNACC	1 cut(s)	758
BstSCI	CCNGG	2 cut(s)	334, 699
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	200
BstXI	CCANNNNNNTGG	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	232, 635, 738
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	557
Cac8I	GCNNGC	3 cut(s)	77, 567, 736
Cfr13I	GGNCC	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	127, 526
CviQI	GTAC	2 cut(s)	127, 526
DdeI	CTNAG	7 cut(s)	71, 80, 102, 673, 727, 822, 1008
DpnI	GATC	2 cut(s)	600, 890
DpnII	GATC	2 cut(s)	598, 888
DraI	TTTAAA	1 cut(s)	898
EaeI	YGGCCR	1 cut(s)	736
Eco147I	AGGCCT	1 cut(s)	232
Eco31I	GGTCTC	2 cut(s)	185, 690
Eco81I	CCTNAGG	1 cut(s)	102
Eco91I	GGTNACC	1 cut(s)	758
EcoO65I	GGTNACC	1 cut(s)	758
EcoRI	GAATTC	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	334, 699
EcoT22I	ATGCAT	1 cut(s)	498
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	1 cut(s)	490
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	544
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	2 cut(s)	168, 453
GluI	GCNGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	232, 635, 738
Hin1I	GRCGYC	1 cut(s)	413
HincII	GTYRAC	3 cut(s)	135, 463, 580
HindII	GTYRAC	3 cut(s)	135, 463, 580
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	3 cut(s)	14, 440, 536
HphI	GGTGA	3 cut(s)	249, 417, 770
Hpy166II	GTNNAC	3 cut(s)	135, 463, 580
Hpy188I	TCNGA	1 cut(s)	448
Hpy8I	GTNNAC	3 cut(s)	135, 463, 580
Hpy99I	CGWCG	3 cut(s)	415, 484, 883
HpyAV	CCTTC	3 cut(s)	79, 613, 749
HpyCH4IV	ACGT	4 cut(s)	328, 413, 482, 657
HpyCH4V	TGCA	9 cut(s)	251, 326, 377, 496, 557, 565, 641, 776, 985
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	7 cut(s)	71, 80, 102, 673, 727, 822, 1008
HpySE526I	ACGT	4 cut(s)	328, 413, 482, 657
Hsp92I	GRCGYC	1 cut(s)	413
Kzo9I	GATC	2 cut(s)	598, 888
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	2 cut(s)	566, 634
MaeI	CTAG	2 cut(s)	168, 453
MaeII	ACGT	4 cut(s)	328, 413, 482, 657
MaeIII	GTNAC	3 cut(s)	158, 312, 758
MalI	GATC	2 cut(s)	600, 890
MboI	GATC	2 cut(s)	598, 888
MboII	GAAGA	7 cut(s)	67, 70, 73, 119, 200, 281, 534
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	3 cut(s)	294, 370, 862
MluNI	TGGCCA	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	134
Mox20I	TGGCCA	1 cut(s)	738
Mph1103I	ATGCAT	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	6 cut(s)	48, 219, 380, 660, 843, 897
MslI	CAYNNNNRTG	4 cut(s)	501, 521, 624, 642
Msp20I	TGGCCA	1 cut(s)	738
MspR9I	CCNGG	2 cut(s)	336, 701
MvaI	CCWGG	2 cut(s)	336, 701
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	2 cut(s)	598, 888
NmuCI	GTSAC	3 cut(s)	158, 312, 758
NsiI	ATGCAT	1 cut(s)	498
NspI	RCATGY	3 cut(s)	133, 672, 916
PceI	AGGCCT	1 cut(s)	232
PciI	ACATGT	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	440, 536
PflMI	CCANNNNNTGG	2 cut(s)	692, 745
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PscI	ACATGT	1 cut(s)	129
Psp1406I	AACGTT	1 cut(s)	657
Psp6I	CCWGG	2 cut(s)	334, 699
PspEI	GGTNACC	1 cut(s)	758
PspGI	CCWGG	2 cut(s)	334, 699
PspPI	GGNCC	1 cut(s)	634
RsaI	GTAC	2 cut(s)	128, 527
RsaNI	GTAC	2 cut(s)	127, 526
RseI	CAYNNNNRTG	4 cut(s)	501, 521, 624, 642
SaqAI	TTAA	6 cut(s)	48, 219, 380, 660, 843, 897
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	598, 888
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	336, 701
SfaNI	GCATC	2 cut(s)	566, 634
SmiMI	CAYNNNNRTG	4 cut(s)	501, 521, 624, 642
SmlI	CTYRAG	4 cut(s)	226, 239, 779, 949
SmoI	CTYRAG	4 cut(s)	226, 239, 779, 949
Sse9I	AATT	3 cut(s)	294, 370, 862
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	1 cut(s)	622
SspI	AATATT	3 cut(s)	46, 406, 691
SspMI	CTAG	2 cut(s)	168, 453
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	334, 699
TaiI	ACGT	4 cut(s)	331, 416, 485, 660
TaqI	TCGA	3 cut(s)	211, 410, 597
TasI	AATT	3 cut(s)	294, 370, 862
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	2 cut(s)	440, 536
Tru1I	TTAA	6 cut(s)	48, 219, 380, 660, 843, 897
Tru9I	TTAA	6 cut(s)	48, 219, 380, 660, 843, 897
TseFI	GTSAC	3 cut(s)	158, 312, 758
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	3 cut(s)	158, 312, 758
TspDTI	ATGAA	4 cut(s)	366, 432, 528, 970
TspGWI	ACGGA	2 cut(s)	359, 896
Van91I	CCANNNNNTGG	2 cut(s)	692, 745
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	3 cut(s)	133, 672, 916
XcmI	CCANNNNNNNNNTGG	3 cut(s)	296, 529, 707
XspI	CTAG	2 cut(s)	168, 453
ZraI	GACGTC	1 cut(s)	414
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.