Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014130

Physical Location & Seq

Genomic Coordinates Forward (+)

1432748 .. 1435193

Gene Structure 2446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAGAAAGCCAGAGTTGTCCATAGAAAAAGATGTGAAAGCAAACAATAACAGCAAGAATAAGATGATGCACAATAAGCTTAGGAAGGGATTGTGGTCGCCAGAAGAAGACGAGAAGTTGATGAGGTACATGTTGAGCAATGGACAAGGGTGTTGGAGTGACATTGCTAGAAACTCTGGTCTCCAAAGGTGTGGAAAGAGTTGTCGTCTTCGTTGGATTAACTACTTGAGACCTGATCTCAAGCGTGGTGCATTTTCGCCTCAGGAGGAACACCTGATCATCCATTTCCATTCCATTCTCGGCAACAAGTGGTCACAGATTGCTGCACGTCTTCCGGGACGAACAGACAATGAAATCAAGAATTTTTGGAACTCTGCATTGAAAAAAAGGTTGAAAAATAACATCTCAACATCGACATCTTCACCGGACGAGAGCGATCACTCGTCGGAGCCGAATGTCAACATTGGGGGAGCAATCAGGCCATTTATCCCGGCCATGCACAATGAACAGGACATGTTGATGAGCATGATGTACATAGACTCATCAACTTCGTCATCCTCAGCATCCATGCATGTCATCAATAACAGCACATTCGAACCCAGCTTCTCTGTGCTTGATAGCTCCTCTTTACTGAACTATGTCGACCACACAGGCTCGACACAACTACCAGAAGGGCAGTATGGGGATTACGGAAATTACTTGGAGGCTGGTCATAAAATGGGGATAGAAGGTGATCATCTCTGTCTTCCTCCTCTTGAGACTAGTAGACGAAATTTAACAGAGAATAAGAATGGTCAAGTAGTTGATAAAATAAGCAATAACAATATCAACCACTTCCATAATAACAACAGTAACAATTGCTTTATTAACACGGCGAGTAATATGAGCTTTAAACTAGATGACGGTGACATATTTGGGCAAGCTGAAGCTGGGGGAAGCTTAAGAGTTGGAGAAGAATGGGACTTTGAGGGTTTCATGCAAGATATATCCTGCTTTCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

335

Amino Acids

37.65

Weight (kDa)

6.18

Isoelectric Point (pI)

64.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	29 - 76	3.7e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	32 - 91	8.2e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	82 - 126	8.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	85 - 133	4.3e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08500
fragaria_vesca	FvH4_7g01020
malus_domestica	MD02G1312700.v1.1 MD07G1010500.v1.1
prunus_persica	Prupe.2G012800_v2.0.a1
pyrus_communis	pycom02g26240 pycom07g00860
rosa_chinensis	RchiOBHm_Chr1g0315931
rosa_laevigata	RLG00000030722
rosa_multiflora	Rmu_ssc0000154.1_g000025
rosa_roxburghii	Rroxscaffold_4G00331300
rosa_rugosa	Rorug01G0007100
rosa_samantha	Rh1AG017900 Rh1BG010900 Rh1CG015200 Rh1DG010900
rosa_wichuraiana	Rw1G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	642, 766
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	2 cut(s)	361, 772
AcuI	CTGAAG	1 cut(s)	945
AfaI	GTAC	2 cut(s)	128, 533
AflII	CTTAAG	1 cut(s)	940
AflIII	ACRYGT	2 cut(s)	129, 513
AgsI	TTSAA	2 cut(s)	382, 394
AhlI	ACTAGT	1 cut(s)	761
AjiI	CACGTC	1 cut(s)	329
AluBI	AGCT	7 cut(s)	79, 603, 621, 888, 923, 929, 939
AluI	AGCT	7 cut(s)	79, 603, 621, 888, 923, 929, 939
Alw26I	GTCTC	3 cut(s)	185, 223, 752
AoxI	GGCC	2 cut(s)	479, 492
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	2 cut(s)	361, 772
AsuC2I	CCSGG	2 cut(s)	336, 491
AsuHPI	GGTGA	3 cut(s)	414, 743, 917
AsuII	TTCGAA	1 cut(s)	594
AxyI	CCTNAGG	1 cut(s)	261
BbsI	GAAGAC	4 cut(s)	114, 200, 323, 737
BbvCI	CCTCAGC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	310
BceAI	ACGGC	1 cut(s)	888
BclI	TGATCA	2 cut(s)	276, 733
BcnI	CCSGG	2 cut(s)	336, 491
BcoDI	GTCTC	3 cut(s)	185, 223, 752
BcuI	ACTAGT	1 cut(s)	761
BfaI	CTAG	3 cut(s)	168, 762, 896
BfrI	CTTAAG	1 cut(s)	940
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	2 cut(s)	336, 491
BmgBI	CACGTC	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	2 cut(s)	336, 491
BmsI	GCATC	2 cut(s)	57, 572
BpiI	GAAGAC	4 cut(s)	114, 200, 323, 737
Bpu10I	CCTNAGC	2 cut(s)	80, 559
Bpu14I	TTCGAA	1 cut(s)	594
BpuEI	CTTGAG	3 cut(s)	224, 247, 776
BpuMI	CCSGG	2 cut(s)	336, 491
BsaI	GGTCTC	2 cut(s)	185, 223
BsaWI	WCCGGW	1 cut(s)	424
Bse21I	CCTNAGG	1 cut(s)	261
Bse3DI	GCAATG	2 cut(s)	145, 162
BseGI	GGATG	3 cut(s)	279, 554, 563
BseMI	GCAATG	2 cut(s)	145, 162
BseMII	CTCAG	2 cut(s)	275, 573
BseRI	GAGGAG	2 cut(s)	613, 741
BseXI	GCAGC	1 cut(s)	310
BseYI	CCCAGC	2 cut(s)	599, 929
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	481, 494
BsiSI	CCGG	3 cut(s)	335, 425, 491
BslFI	GGGAC	2 cut(s)	351, 974
BsmAI	GTCTC	3 cut(s)	185, 223, 752
BsmFI	GGGAC	2 cut(s)	351, 974
BsnI	GGCC	2 cut(s)	481, 494
Bso31I	GGTCTC	2 cut(s)	185, 223
Bsp119I	TTCGAA	1 cut(s)	594
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	4 cut(s)	235, 276, 436, 733
BspANI	GGCC	2 cut(s)	481, 494
BspCNI	CTCAG	2 cut(s)	274, 572
BspLI	GGNNCC	1 cut(s)	450
BspT104I	TTCGAA	1 cut(s)	594
BspTI	CTTAAG	1 cut(s)	940
BspTNI	GGTCTC	2 cut(s)	185, 223
BsrDI	GCAATG	2 cut(s)	145, 162
BsrGI	TGTACA	1 cut(s)	531
BssMI	GATC	4 cut(s)	235, 276, 436, 733
Bst4CI	ACNGT	2 cut(s)	851, 905
BstAFI	CTTAAG	1 cut(s)	940
BstAUI	TGTACA	1 cut(s)	531
BstBI	TTCGAA	1 cut(s)	594
BstC8I	GCNNGC	1 cut(s)	921
BstDEI	CTNAG	4 cut(s)	80, 261, 559, 1002
BstF5I	GGATG	3 cut(s)	279, 554, 563
BstKTI	GATC	4 cut(s)	238, 279, 439, 736
BstMAI	GTCTC	3 cut(s)	185, 223, 752
BstMBI	GATC	4 cut(s)	235, 276, 436, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNSI	RCATGY	3 cut(s)	133, 517, 575
BstSCI	CCNGG	2 cut(s)	334, 489
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	4 cut(s)	114, 200, 323, 737
BstXI	CCANNNNNNTGG	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	481, 494
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	3 cut(s)	279, 554, 563
Cac8I	GCNNGC	1 cut(s)	921
Csp6I	GTAC	2 cut(s)	127, 532
CviAII	CATG	7 cut(s)	130, 496, 514, 526, 568, 572, 976
CviQI	GTAC	2 cut(s)	127, 532
DdeI	CTNAG	4 cut(s)	80, 261, 559, 1002
DpnI	GATC	4 cut(s)	237, 278, 438, 735
DpnII	GATC	4 cut(s)	235, 276, 436, 733
DraI	TTTAAA	1 cut(s)	892
EaeI	YGGCCR	1 cut(s)	492
Eco31I	GGTCTC	2 cut(s)	185, 223
Eco57I	CTGAAG	1 cut(s)	945
Eco81I	CCTNAGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	573
FaeI	CATG	7 cut(s)	133, 499, 517, 529, 571, 575, 979
FaqI	GGGAC	2 cut(s)	351, 974
FatI	CATG	7 cut(s)	129, 495, 513, 525, 567, 571, 975
FbaI	TGATCA	2 cut(s)	276, 733
FblI	GTMKAC	2 cut(s)	642, 766
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	3 cut(s)	266, 541, 550
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	3 cut(s)	168, 762, 896
GluI	GCNGC	1 cut(s)	324
GsaI	CCCAGC	2 cut(s)	603, 933
HaeIII	GGCC	2 cut(s)	481, 494
HapII	CCGG	3 cut(s)	335, 425, 491
Hin1II	CATG	7 cut(s)	133, 499, 517, 529, 571, 575, 979
HincII	GTYRAC	2 cut(s)	460, 643
HindII	GTYRAC	2 cut(s)	460, 643
HindIII	AAGCTT	2 cut(s)	77, 937
HinfI	GANTC	1 cut(s)	539
HpaII	CCGG	3 cut(s)	335, 425, 491
HphI	GGTGA	3 cut(s)	414, 743, 917
Hpy166II	GTNNAC	3 cut(s)	460, 643, 767
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	3 cut(s)	263, 358, 755
Hpy8I	GTNNAC	3 cut(s)	460, 643, 767
Hpy99I	CGWCG	1 cut(s)	448
HpyAV	CCTTC	3 cut(s)	79, 665, 722
HpyCH4III	ACNGT	2 cut(s)	851, 905
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	7 cut(s)	70, 251, 326, 377, 499, 571, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	4 cut(s)	80, 261, 559, 1002
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	7 cut(s)	133, 499, 517, 529, 571, 575, 979
Ksp22I	TGATCA	2 cut(s)	276, 733
Kzo9I	GATC	4 cut(s)	235, 276, 436, 733
LmnI	GCTCC	3 cut(s)	448, 470, 626
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	2 cut(s)	57, 572
MaeI	CTAG	3 cut(s)	168, 762, 896
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	4 cut(s)	158, 312, 851, 905
MalI	GATC	4 cut(s)	237, 278, 438, 735
MboI	GATC	4 cut(s)	235, 276, 436, 733
MboII	GAAGA	7 cut(s)	116, 119, 200, 323, 411, 737, 965
MfeI	CAATTG	1 cut(s)	856
MluCI	AATT	4 cut(s)	361, 694, 772, 856
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	4 cut(s)	134, 194, 426, 928
MnlI	CCTC	9 cut(s)	117, 259, 270, 568, 634, 697, 759, 762, 961
Mph1103I	ATGCAT	1 cut(s)	573
MseI	TTAA	5 cut(s)	219, 776, 867, 891, 941
MslI	CAYNNNNRTG	1 cut(s)	518
MspCI	CTTAAG	1 cut(s)	940
MspI	CCGG	3 cut(s)	335, 425, 491
MspR9I	CCNGG	2 cut(s)	336, 491
MunI	CAATTG	1 cut(s)	856
MwoI	GCNNNNNNNGC	1 cut(s)	76
NciI	CCSGG	2 cut(s)	336, 491
NdeII	GATC	4 cut(s)	235, 276, 436, 733
NlaIII	CATG	7 cut(s)	133, 499, 517, 529, 571, 575, 979
NlaIV	GGNNCC	1 cut(s)	450
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	3 cut(s)	158, 312, 905
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	3 cut(s)	133, 517, 575
NspV	TTCGAA	1 cut(s)	594
PciI	ACATGT	2 cut(s)	129, 513
PcsI	WCGNNNNNNNCGW	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
PscI	ACATGT	2 cut(s)	129, 513
PspFI	CCCAGC	2 cut(s)	599, 929
PspN4I	GGNNCC	1 cut(s)	450
RsaI	GTAC	2 cut(s)	128, 533
RsaNI	GTAC	2 cut(s)	127, 532
RseI	CAYNNNNRTG	1 cut(s)	518
SalI	GTCGAC	1 cut(s)	641
SaqAI	TTAA	5 cut(s)	219, 776, 867, 891, 941
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	4 cut(s)	235, 276, 436, 733
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	336, 491
SfaNI	GCATC	2 cut(s)	57, 572
SfuI	TTCGAA	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	4 cut(s)	226, 239, 755, 940
SmoI	CTYRAG	4 cut(s)	226, 239, 755, 940
SpeI	ACTAGT	1 cut(s)	761
Sse9I	AATT	4 cut(s)	361, 694, 772, 856
SspMI	CTAG	3 cut(s)	168, 762, 896
StyD4I	CCNGG	2 cut(s)	334, 489
TaaI	ACNGT	2 cut(s)	851, 905
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	4 cut(s)	413, 594, 642, 656
TasI	AATT	4 cut(s)	361, 694, 772, 856
TatI	WGTACW	1 cut(s)	531
Tru1I	TTAA	5 cut(s)	219, 776, 867, 891, 941
Tru9I	TTAA	5 cut(s)	219, 776, 867, 891, 941
TseFI	GTSAC	3 cut(s)	158, 312, 905
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	3 cut(s)	158, 312, 905
TspDTI	ATGAA	3 cut(s)	366, 519, 964
TspGWI	ACGGA	1 cut(s)	705
Vha464I	CTTAAG	1 cut(s)	940
XapI	RAATTY	2 cut(s)	361, 772
XceI	RCATGY	3 cut(s)	133, 517, 575
XmiI	GTMKAC	2 cut(s)	642, 766
XspI	CTAG	3 cut(s)	168, 762, 896
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.