AT3G08560

ATPase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016531
Physical Location & Seq
Forward (+)
2600091 .. 2601907
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G08560.1

Sequence Viewer

Length: 708 bp
ATGAACGATGCGGATGTGTCAAAGCAGATACAGCAGATGGTCCGGTTCATCCGGCAAGAAGCAGAAGAGAAAGCAAACGAGATCTCCATCTCCGCCGAGGAGGAATTCAACATAGAAAGACTTCAGCTTCTCGAGTCTGCCAAGCGTAAGCTCCGTCAAGACTATGACCGCAAGCTCAAGCAGGTTGATATCCGCAAGCGAATCGACTACTCCACACAACTGAATGCAAGTAGGATTAAGTACCTTCAAGCTCAAGATGACGTTGTCACTGCCATGAAAGACTCCGCAGCTAAGGATCTTCTCCGTGTCTCCAACGACAAGAACAATTACAAGAAGCTTCTTAAGAGTCTCATCATTGAGAGTTTGCTGCGCCTGAAAGAGCCATCAGTGCTGCTGAGATGCAGAGAAATGGACAAGAAGGTTGTTGAATCGGTCATTGAAGATGCTAAAAGACAGTACGCGGAAAAAGCCAAAGTCGGGTCTCCTAAGATCACCATCGACGAAAAGGTCTTCCTCCCTCCACCTCCTAATCCGAAGCTCCCTGATTCCCACGACCCTCACTGCTCGGGTGGGGTGGTGCTGGCCTCTCAAGACGGCAAGATTGTCTGCGAGAACACTTTAGACGCACGCCTTGACGTCGCCTTCAGACAGAAGCTTCCCCAGATCCGGACGCGCCTCGTTGGAGCTCCTGAAACCTCCAGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0003735 GO:0003824 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005840 GO:0005844 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007030 GO:0007275 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009705 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010256 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022414 GO:0022626 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032991 GO:0034220 GO:0036442 GO:0042221 GO:0042546 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0042788 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044769 GO:0046961 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071554 GO:0071669 GO:0071840 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00190 ko00380 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map00380 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
vATP-synt_E

Protein Analysis

235

Amino Acids

26.85

Weight (kDa)

9.2

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
vATP-synt_E PF01991 16 - 226 1.6e-63 ATP synthase (E/31 kDa) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08560
fragaria_vesca FvH4_6g09500
malus_domestica MD04G1177000.v1.1 MD12G1192200.v1.1
prunus_persica Prupe.6G296700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460081
rosa_laevigata RLG00000025045
rosa_multiflora Rmu_sc0000449.1_g000055
rosa_roxburghii Rroxscaffold_6G00419860
rosa_rugosa Rorug03G0039300
rosa_samantha Rh3BG100900 Rh3CG103000 Rh3DG102200
rosa_wichuraiana Rw3G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 506
AatII GACGTC 1 cut(s) 639
Acc36I ACCTGC 1 cut(s) 172
AccII CGCG 2 cut(s) 461, 673
AccIII TCCGGA 1 cut(s) 666
AciI CCGC 6 cut(s) 11, 93, 169, 193, 285, 461
AclWI GGATC 2 cut(s) 303, 658
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 2 cut(s) 107, 628
AcyI GRCGYC 1 cut(s) 636
AfaI GTAC 2 cut(s) 242, 458
AfiI CCNNNNNNNGG 2 cut(s) 477, 666
AflII CTTAAG 1 cut(s) 341
AgsI TTSAA 4 cut(s) 109, 248, 428, 440
AluBI AGCT 9 cut(s) 127, 151, 175, 251, 290, 337, 538, 655, 686
AluI AGCT 9 cut(s) 127, 151, 175, 251, 290, 337, 538, 655, 686
Alw21I GWGCWC 1 cut(s) 688
Alw26I GTCTC 3 cut(s) 313, 353, 486
AlwI GGATC 2 cut(s) 303, 658
Ama87I CYCGRG 2 cut(s) 131, 565
Aor13HI TCCGGA 1 cut(s) 666
AoxI GGCC 1 cut(s) 582
ApeKI GCWGC 3 cut(s) 287, 367, 391
ApoI RAATTY 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 120
AspLEI GCGC 2 cut(s) 372, 675
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 484
AvaI CYCGRG 2 cut(s) 131, 565
AvaII GGWCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 688
BbsI GAAGAC 1 cut(s) 502
Bbv12I GWGCWC 1 cut(s) 688
BbvI GCAGC 3 cut(s) 299, 354, 378
BccI CCATC 4 cut(s) 31, 95, 391, 503
BceAI ACGGC 1 cut(s) 610
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BcoDI GTCTC 3 cut(s) 313, 353, 486
BfrI CTTAAG 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 172
BglII AGATCT 1 cut(s) 81
BisI GCNGC 3 cut(s) 288, 368, 392
BlsI GCNGC 3 cut(s) 289, 369, 393
Bme18I GGWCC 1 cut(s) 40
BmeT110I CYCGRG 2 cut(s) 131, 565
BmgT120I GGNCC 1 cut(s) 40
BmsI GCATC 2 cut(s) 389, 433
BpiI GAAGAC 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 682
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 3 cut(s) 161, 237, 573
BsaBI GATNNNNATC 2 cut(s) 86, 494
BsaHI GRCGYC 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 2 cut(s) 42, 666
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 2 cut(s) 477, 666
Bse8I GATNNNNATC 2 cut(s) 86, 494
BseAI TCCGGA 1 cut(s) 666
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 19, 48
BseJI GATNNNNATC 2 cut(s) 86, 494
BseLI CCNNNNNNNGG 2 cut(s) 477, 666
BseMII CTCAG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 3 cut(s) 299, 354, 378
Bsh1236I CGCG 2 cut(s) 461, 673
BshFI GGCC 1 cut(s) 584
BsiHKAI GWGCWC 1 cut(s) 688
BsiHKCI CYCGRG 2 cut(s) 131, 565
BsiSI CCGG 3 cut(s) 43, 52, 667
BslI CCNNNNNNNGG 2 cut(s) 477, 666
BsmAI GTCTC 3 cut(s) 313, 353, 486
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 1 cut(s) 584
Bso31I GGTCTC 1 cut(s) 486
BsoBI CYCGRG 2 cut(s) 131, 565
Bsp1286I GDGCHC 1 cut(s) 688
Bsp13I TCCGGA 1 cut(s) 666
Bsp143I GATC 4 cut(s) 81, 295, 489, 663
BspACI CCGC 6 cut(s) 11, 93, 169, 193, 285, 461
BspANI GGCC 1 cut(s) 584
BspCNI CTCAG 1 cut(s) 387
BspEI TCCGGA 1 cut(s) 666
BspFNI CGCG 2 cut(s) 461, 673
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 2 cut(s) 303, 658
BspTI CTTAAG 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 486
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 4 cut(s) 81, 295, 489, 663
BssNI GRCGYC 1 cut(s) 636
Bst4CI ACNGT 1 cut(s) 456
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 636
BstAFI CTTAAG 1 cut(s) 341
BstC8I GCNNGC 4 cut(s) 173, 197, 582, 628
BstDEI CTNAG 3 cut(s) 291, 395, 486
BstF5I GGATG 2 cut(s) 19, 48
BstFNI CGCG 2 cut(s) 461, 673
BstHHI GCGC 2 cut(s) 372, 675
BstKTI GATC 4 cut(s) 84, 298, 492, 666
BstMAI GTCTC 3 cut(s) 313, 353, 486
BstMBI GATC 4 cut(s) 81, 295, 489, 663
BstMWI GCNNNNNNNGC 3 cut(s) 31, 388, 467
BstUI CGCG 2 cut(s) 461, 673
BstV1I GCAGC 3 cut(s) 299, 354, 378
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 3 cut(s) 81, 295, 663
BstYI RGATCY 3 cut(s) 81, 295, 663
BsuRI GGCC 1 cut(s) 584
BtsCI GGATG 2 cut(s) 19, 48
BtsI GCAGTG 2 cut(s) 267, 559
BtsIMutI CAGTG 3 cut(s) 267, 393, 559
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 4 cut(s) 173, 197, 582, 628
CfoI GCGC 2 cut(s) 372, 675
Cfr13I GGNCC 1 cut(s) 40
CseI GACGC 2 cut(s) 632, 679
Csp6I GTAC 2 cut(s) 241, 457
CviAII CATG 2 cut(s) 274, 705
CviQI GTAC 2 cut(s) 241, 457
DdeI CTNAG 3 cut(s) 291, 395, 486
DpnI GATC 4 cut(s) 83, 297, 491, 665
DpnII GATC 4 cut(s) 81, 295, 489, 663
DrdI GACNNNNNNGTC 1 cut(s) 506
DseDI GACNNNNNNGTC 1 cut(s) 506
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EciI GGCGGA 1 cut(s) 82
Ecl136II GAGCTC 1 cut(s) 686
Eco24I GRGCYC 1 cut(s) 688
Eco31I GGTCTC 1 cut(s) 486
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 686
Eco57I CTGAAG 2 cut(s) 107, 628
Eco88I CYCGRG 2 cut(s) 131, 565
EcoICRI GAGCTC 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 104
EcoRV GATATC 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 688
FaeI CATG 2 cut(s) 277, 708
FaiI YATR 4 cut(s) 113, 165, 275, 706
FatI CATG 2 cut(s) 273, 704
Fnu4HI GCNGC 3 cut(s) 288, 368, 392
FokI GGATG 2 cut(s) 26, 35
FriOI GRGCYC 1 cut(s) 688
Fsp4HI GCNGC 3 cut(s) 288, 368, 392
GlaI GCGC 2 cut(s) 371, 674
GluI GCNGC 3 cut(s) 288, 368, 392
GsuI CTGGAG 1 cut(s) 682
HaeIII GGCC 1 cut(s) 584
HapII CCGG 3 cut(s) 43, 52, 667
HgaI GACGC 2 cut(s) 632, 679
HhaI GCGC 2 cut(s) 372, 675
Hin1I GRCGYC 1 cut(s) 636
Hin1II CATG 2 cut(s) 277, 708
Hin6I GCGC 2 cut(s) 370, 673
HinP1I GCGC 2 cut(s) 370, 673
HindIII AAGCTT 2 cut(s) 335, 653
HinfI GANTC 6 cut(s) 134, 201, 281, 346, 428, 545
HpaII CCGG 3 cut(s) 43, 52, 667
HphI GGTGA 1 cut(s) 484
Hpy188I TCNGA 2 cut(s) 534, 647
Hpy188III TCNNGA 7 cut(s) 131, 158, 254, 590, 667, 689, 699
Hpy99I CGWCG 2 cut(s) 503, 641
HpyAV CCTTC 3 cut(s) 254, 412, 652
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4IV ACGT 2 cut(s) 261, 636
HpyCH4V TGCA 2 cut(s) 227, 402
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 388, 467
HpyF3I CTNAG 3 cut(s) 291, 395, 486
HpySE526I ACGT 2 cut(s) 261, 636
Hsp92I GRCGYC 1 cut(s) 636
Hsp92II CATG 2 cut(s) 277, 708
HspAI GCGC 2 cut(s) 370, 673
Kpn2I TCCGGA 1 cut(s) 666
Kzo9I GATC 4 cut(s) 81, 295, 489, 663
LmnI GCTCC 4 cut(s) 156, 543, 683, 691
LpnPI CCDG 9 cut(s) 56, 65, 167, 386, 555, 566, 674, 680, 702
Lsp1109I GCAGC 3 cut(s) 299, 354, 378
LweI GCATC 2 cut(s) 389, 433
MaeII ACGT 2 cut(s) 261, 636
MaeIII GTNAC 1 cut(s) 265
MalI GATC 4 cut(s) 83, 297, 491, 665
MboI GATC 4 cut(s) 81, 295, 489, 663
MboII GAAGA 4 cut(s) 77, 290, 452, 502
MflI RGATCY 3 cut(s) 81, 295, 663
MhlI GDGCHC 1 cut(s) 688
MluCI AATT 2 cut(s) 104, 325
MlyI GAGTC 3 cut(s) 143, 275, 355
MmeI TCCRAC 2 cut(s) 336, 661
MnlI CCTC 9 cut(s) 91, 94, 524, 528, 534, 567, 595, 686, 706
MroI TCCGGA 1 cut(s) 666
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 2 cut(s) 237, 342
MslI CAYNNNNRTG 1 cut(s) 272
MspCI CTTAAG 1 cut(s) 341
MspI CCGG 3 cut(s) 43, 52, 667
Mva1269I GAATGC 1 cut(s) 229
MvnI CGCG 2 cut(s) 461, 673
MwoI GCNNNNNNNGC 3 cut(s) 31, 388, 467
NdeII GATC 4 cut(s) 81, 295, 489, 663
NlaIII CATG 2 cut(s) 277, 708
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 265
PaeR7I CTCGAG 1 cut(s) 131
PctI GAATGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 3 cut(s) 201, 428, 545
PflFI GACNNNGTC 1 cut(s) 263
PkrI GCNGC 3 cut(s) 289, 369, 393
PleI GAGTC 3 cut(s) 142, 275, 354
PpsI GAGTC 3 cut(s) 142, 275, 354
Psp124BI GAGCTC 1 cut(s) 688
PspPI GGNCC 1 cut(s) 40
PsuI RGATCY 3 cut(s) 81, 295, 663
PsyI GACNNNGTC 1 cut(s) 263
RsaI GTAC 2 cut(s) 242, 458
RsaNI GTAC 2 cut(s) 241, 457
RseI CAYNNNNRTG 1 cut(s) 272
SacI GAGCTC 1 cut(s) 688
SaqAI TTAA 2 cut(s) 237, 342
SatI GCNGC 3 cut(s) 288, 368, 392
Sau3AI GATC 4 cut(s) 81, 295, 489, 663
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 3 cut(s) 143, 275, 355
SduI GDGCHC 1 cut(s) 688
SfaNI GCATC 2 cut(s) 389, 433
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 5 cut(s) 131, 176, 252, 341, 588
SmoI CTYRAG 5 cut(s) 131, 176, 252, 341, 588
Sse9I AATT 2 cut(s) 104, 325
SsiI CCGC 6 cut(s) 11, 93, 169, 193, 285, 461
SstI GAGCTC 1 cut(s) 688
TaaI ACNGT 1 cut(s) 456
TaiI ACGT 2 cut(s) 264, 639
TaqI TCGA 3 cut(s) 132, 204, 498
TaqII GACCGA 1 cut(s) 421
TasI AATT 2 cut(s) 104, 325
TfiI GAWTC 3 cut(s) 201, 428, 545
Tru1I TTAA 2 cut(s) 237, 342
Tru9I TTAA 2 cut(s) 237, 342
TscAI CASTG 3 cut(s) 274, 393, 566
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 3 cut(s) 287, 367, 391
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 3 cut(s) 17, 37, 290
TspGWI ACGGA 2 cut(s) 143, 293
TspRI CASTG 3 cut(s) 274, 393, 566
Tth111I GACNNNGTC 1 cut(s) 263
Vha464I CTTAAG 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 104
XhoI CTCGAG 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 120
ZraI GACGTC 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.