Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016531

Physical Location & Seq

Genomic Coordinates Forward (+)

27106397 .. 27108164

Gene Structure 1768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G296700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAACGATGCAGATGTCTCGAAGCAGATTCAGCAGATGGTCAGATTCATCCGGCAAGAGGCCGAAGAGAAAGCCAATGAGATATCTGTCTCTGCTGAGGAGGAATTTAACATTGAGAAGCTGCAAATATTTGAAGCTGACAAGAAAAAGATCAAGCAAGAGTATGACCGCAAGGCAAAGCAGGTGGATGTGCGCAAGAAGATCGAATACTCGATGCAGCTGAATGCATCTCGTATAAAAGTTCTTCAAGCACAGGATGACATTGTAAACTCCATGAAAGAAGCTGCTGGCAAGGATCTTCTGCGTGTTTCGGACGACAACAAGGCATACAAGAAGCTCATCAAAGACTTGATTGTTCTGAGTTTGATGAGGCTCAAGGAGCCAGCAGTCTTGCTACGGTGCAGAGAGGTTGACAAGAAAGTTGTTGAGTCTGTGTTGGAGGAAGCAAAGAAAGCTTATGCTGATAAAGCCAGTGCTTCCGTCCCCAAAGTCACCATCGATGATCGTGTGTTCCTCCCACCTCCTCCGAAAGGTGGCGACTCTCATGAGCCCTTTTGTTCTGGTGGAGTGGTGTTGGCCTCCCAAGATGGAAAGATAGTGTGTGAAAACACCCTTGACGCACGATTGGACGTTGTGTTCAGACAGAAGCTACCTGAGATTCGGAAGCGCCTTTTAGGACAAACCAGTGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko00380 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map00380 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

vATP-synt_E

Protein Analysis

232

Amino Acids

26.12

Weight (kDa)

8.78

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08560
fragaria_vesca	FvH4_6g09500
malus_domestica	MD04G1177000.v1.1 MD12G1192200.v1.1
prunus_persica	Prupe.6G296700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0460081
rosa_laevigata	RLG00000025045
rosa_multiflora	Rmu_sc0000449.1_g000055
rosa_roxburghii	Rroxscaffold_6G00419860
rosa_rugosa	Rorug03G0039300
rosa_samantha	Rh3BG100900 Rh3CG103000 Rh3DG102200
rosa_wichuraiana	Rw3G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	172
Acc16I	TGCGCA	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	172
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	104
AfiI	CCNNNNNNNGG	3 cut(s)	58, 530, 533
AgsI	TTSAA	2 cut(s)	134, 248
AloI	GAACNNNNNNTCC	2 cut(s)	620, 652
AluBI	AGCT	7 cut(s)	121, 137, 220, 284, 337, 455, 649
AluI	AGCT	7 cut(s)	121, 137, 220, 284, 337, 455, 649
Alw26I	GTCTC	2 cut(s)	22, 94
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	2 cut(s)	60, 576
ApeKI	GCWGC	3 cut(s)	121, 217, 284
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	2 cut(s)	195, 669
AsuHPI	GGTGA	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	552
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	108, 229, 271
BccI	CCATC	3 cut(s)	31, 503, 581
BcgI	CGANNNNNNTGC	3 cut(s)	34, 184, 218
BcoDI	GTCTC	2 cut(s)	22, 94
BfoI	RGCGCY	1 cut(s)	670
BfuAI	ACCTGC	1 cut(s)	172
BisI	GCNGC	3 cut(s)	122, 218, 285
BlsI	GCNGC	3 cut(s)	123, 219, 286
BmiI	GGNNCC	1 cut(s)	381
BmsI	GCATC	2 cut(s)	204, 236
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 530, 533
Bse1I	ACTGG	2 cut(s)	471, 684
BseCI	ATCGAT	1 cut(s)	498
BseGI	GGATG	3 cut(s)	48, 193, 262
BseLI	CCNNNNNNNGG	3 cut(s)	58, 530, 533
BseMII	CTCAG	3 cut(s)	87, 350, 645
BseNI	ACTGG	2 cut(s)	471, 684
BseRI	GAGGAG	2 cut(s)	113, 513
BseXI	GCAGC	3 cut(s)	108, 229, 271
BsgI	GTGCAG	1 cut(s)	421
BshFI	GGCC	2 cut(s)	62, 578
BshVI	ATCGAT	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	3 cut(s)	58, 530, 533
BsmAI	GTCTC	2 cut(s)	22, 94
BsmFI	GGGAC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	62, 578
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	4 cut(s)	150, 201, 295, 502
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	2 cut(s)	62, 578
BspCNI	CTCAG	3 cut(s)	88, 351, 646
BspDI	ATCGAT	1 cut(s)	498
BspHI	TCATGA	2 cut(s)	544, 692
BspLI	GGNNCC	1 cut(s)	381
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	471, 684
BssMI	GATC	4 cut(s)	150, 201, 295, 502
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	289, 384
BstDEI	CTNAG	3 cut(s)	96, 359, 654
BstENI	CCTNNNNNAGG	1 cut(s)	528
BstF5I	GGATG	3 cut(s)	48, 193, 262
BstH2I	RGCGCY	1 cut(s)	670
BstHHI	GCGC	2 cut(s)	195, 669
BstKTI	GATC	4 cut(s)	153, 204, 298, 505
BstMAI	GTCTC	2 cut(s)	22, 94
BstMBI	GATC	4 cut(s)	150, 201, 295, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 379, 452, 467
BstV1I	GCAGC	3 cut(s)	108, 229, 271
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	62, 578
BsuTUI	ATCGAT	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	48, 193, 262
BtsIMutI	CAGTG	2 cut(s)	478, 691
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	289, 384
CciI	TCATGA	2 cut(s)	544, 692
CfoI	GCGC	2 cut(s)	195, 669
ClaI	ATCGAT	1 cut(s)	498
CseI	GACGC	1 cut(s)	626
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviAII	CATG	3 cut(s)	274, 545, 693
DdeI	CTNAG	3 cut(s)	96, 359, 654
DpnI	GATC	4 cut(s)	152, 203, 297, 504
DpnII	GATC	4 cut(s)	150, 201, 295, 502
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	552
Eco32I	GATATC	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	528
EcoRV	GATATC	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	552
FaeI	CATG	3 cut(s)	277, 548, 696
FaiI	YATR	7 cut(s)	165, 236, 275, 328, 459, 546, 694
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	3 cut(s)	273, 544, 692
Fnu4HI	GCNGC	3 cut(s)	122, 218, 285
FokI	GGATG	3 cut(s)	35, 200, 269
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	3 cut(s)	122, 218, 285
FspI	TGCGCA	1 cut(s)	194
GlaI	GCGC	2 cut(s)	194, 668
GluI	GCNGC	3 cut(s)	122, 218, 285
HaeII	RGCGCY	1 cut(s)	670
HaeIII	GGCC	2 cut(s)	62, 578
HapII	CCGG	1 cut(s)	52
HgaI	GACGC	1 cut(s)	626
HhaI	GCGC	2 cut(s)	195, 669
Hin1II	CATG	3 cut(s)	277, 548, 696
Hin6I	GCGC	2 cut(s)	193, 667
HinP1I	GCGC	2 cut(s)	193, 667
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	5 cut(s)	28, 45, 428, 539, 658
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	2 cut(s)	268, 412
Hpy188I	TCNGA	6 cut(s)	44, 313, 360, 528, 641, 663
Hpy188III	TCNNGA	3 cut(s)	19, 545, 693
Hpy8I	GTNNAC	2 cut(s)	268, 412
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	6 cut(s)	11, 124, 217, 227, 402, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 379, 452, 467
HpyF3I	CTNAG	3 cut(s)	96, 359, 654
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	3 cut(s)	277, 548, 696
HspAI	GCGC	2 cut(s)	193, 667
Kzo9I	GATC	4 cut(s)	150, 201, 295, 502
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	8 cut(s)	65, 167, 239, 273, 396, 484, 546, 666
Lsp1109I	GCAGC	3 cut(s)	108, 229, 271
LweI	GCATC	2 cut(s)	204, 236
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	4 cut(s)	152, 203, 297, 504
MboI	GATC	4 cut(s)	150, 201, 295, 502
MboII	GAAGA	4 cut(s)	77, 211, 236, 290
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	437, 533
MmeI	TCCRAC	1 cut(s)	417
Mph1103I	ATGCAT	1 cut(s)	229
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	220
MspI	CCGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	229
MwoI	GCNNNNNNNGC	4 cut(s)	31, 379, 452, 467
NdeII	GATC	4 cut(s)	150, 201, 295, 502
NlaIII	CATG	3 cut(s)	277, 548, 696
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	490
NsbI	TGCGCA	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	229
PagI	TCATGA	2 cut(s)	544, 692
PaqCI	CACCTGC	1 cut(s)	172
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	28, 45, 658
PkrI	GCNGC	3 cut(s)	123, 219, 286
PleI	GAGTC	2 cut(s)	436, 533
PpsI	GAGTC	2 cut(s)	436, 533
PspN4I	GGNNCC	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	3 cut(s)	122, 218, 285
Sau3AI	GATC	4 cut(s)	150, 201, 295, 502
SchI	GAGTC	2 cut(s)	437, 533
SduI	GDGCHC	1 cut(s)	552
SfaNI	GCATC	2 cut(s)	204, 236
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	1 cut(s)	169
SspI	AATATT	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	399
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	4 cut(s)	20, 204, 212, 498
TasI	AATT	1 cut(s)	104
TfiI	GAWTC	3 cut(s)	28, 45, 658
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	478, 691
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	3 cut(s)	121, 217, 284
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	3 cut(s)	17, 37, 290
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	2 cut(s)	478, 691
XagI	CCTNNNNNAGG	1 cut(s)	528
XapI	RAATTY	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.