Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006132

Physical Location & Seq

Genomic Coordinates Forward (+)

3062065 .. 3070086

Gene Structure 8022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0039300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2757 bp

ATGAAGCACATTTTCAAGAAGCTTCATATAGGGAGCAACCACGACCCGGCGGCTCGATCGAACGAGCCACCAACAACGTTGACGTCACCTTCACCGTCATGCGACTCCGATCACCGGCAGAGCGCCGGGAACCATCCCCCGGCGAGTGCTTTTTCTTCTTCGTCGTCGTCGCCGGTGGGGACGGTACCGGCGAACGGAGGTGTAGGTGCCAATTCGGAGTCGTCTGTGACGGCGACGACCGGGAATCGGCCGGACTATATGTTGTCGGAGGAGGAGTTTCAGGTGCAGCTTGCGCTGGCGATCAGTGCTTCGAATTCGGATGATCCGGAGAAGGATCAGATCCGTACGGCGACGATGCTGAGCTTGGGCGGCGGCCGTCGTGGTGGTGATCAGACGGGGGATGAGGTGGATGCGGCCGCCGCGGAGACCTTGTCCAGGCACTATTGGGAATACAACGTGCTAGACTACGACGAAAAAGTGGTTGATGGGTTTTATGATGTATATGGACTTTCCACGGATTCTGCAGTACAAGGAAAAATGCCTTCTCTCGCAAATCTTGAAACAAACCTTGGGAGATCTGGATTTGAAGTTTCATTAGTAAATCGAACACTTGATCCTACCTTGGAAGAGTTGGTGCAAATTGCACAGTGTATTGCCGTAGACTGCCCCATCACCAATGTTGGAATTTTGGTACAGAGGCTTGCTGAACTCGTTAGCGGACATATGGGCGGGCCTGTAAAGGATGCTAATATCATCTTGGCGAGGTGGATGGAAAGAAGTTCAGAGTTGAGGGCATCTTCACAAACAATTGTACTACCTATTGGGTCCATAACCATTGGCCTCTCCCGACATCGTGCTTTACTTTTCAAGGTATTAGCTGACAGTATCAAGATGCCTTGCAGACTGCTTAAGGGTGTGCACTACACAGGTGTCGAGGATGGTGCTATTAATGTAGTAAAGTTGGAGGATGACAGGGAGTTTATGGTGGATCTTATGGCGGATCCTGGAACACTCATACCAGCTGACAATCCAAGTGCAAAGGACACTACCTTCAAGCCAATCAATCCGAAATCGAACAGAATCCCAACTTTCCCTTCTTTGATTGATTCTGAAATTGTGTACTCAGGACCAAAGCCATTACATGGAGAGGGAAGCAGCCAAAGCTTGCAAACTTCTGAGAAAGCAGAATCATTCTGGGGTGAAATTGGCGGCAGAGGAGTTGGTTCTTCTGGAGTCCCCAAGAGAGGAACTCAATTAGATCATCTTCCCTTGTCAGCTTTCGAAAATTCACGGTACAGAGGGAACCGTGGGGCACCTGCAGTTGATGGTGTGAGGATGAATCAAAATGTAGTTCCATATGCTCAAAATAACTCGGAGGACTCTAACAGTCTTTTTGCAGATCTTAACCCATTCCAAGTAAAAGGAACTGGGAAAGCTCCTATATATAACAAACCTTTGGAGAATAAGGCCGATGAGCTTCAGAGACCAAGAAATAATCTTGCCTCGTACACAAAAAATGTTCGTGCACACAATGAAGTCCCGAAAAAGAAGGAGTATGATTATTTGGATGGAATTATCCCAAGAGTTAATCGAGAACCCAATGGTTATAATCCGTCATCTTCAGCTTCCACCAGCTCCACCAAATCTGAACAGATCAATACTGGTGGTTTCAAATCTACTGCACATCCAAATATGTCTGAGTATTTACAAAGTGGCTCTGTAGAACGTGAGAATAATGTAAATGGCTTCCATGATCGAAGAAAGTTCACTCATGAAAGATTCATGGAGACCAATTCCAAACTGAAGGATCCAGAAAGTTGCAACTCATCCTTTGATTCCATAACAAGTAGGGTTGAGCAAGTATTTGAGGATGTTGATGTAAGTGAGAGTGAAATTCCGTGGGAAGACCTGCTTATTGGAGAAAGAATTGGACTGGGTTCATATGGAGAGGTGTACCATGCTGAATGGAATGGCACGGAAGTTGCTGTGAAGAAGTTCCTAGACCAGGATTTCTCGGGTGCTGCTTTGGCTGAGTTCAAAAGAGAAGTACGGATAATGCGTAGGCTGCGGCATCCGAATGTTGTGCTTTTTATGGGTGCTATTACACGTCCTCCTAACCTCTCTATCATTACAGAGTTCCTTCCAAGGGGAAGTCTATATCGGATTATCCATCGTCCTCATTGTCAAATTGAAGAGAGACGAAGATTAAAGATGGCTCTTGATGTGGCAAGGGGTATGAATTGCTTGCATTCGAGCAACCCCACTATTGTTCACCGGGATTTGAAATCTCCAAATCTATTGGTTGATAAGAACTGGAATGTGAAGGTAGGTGATTTTGGACTGTCGCGCTTGAAACATAACACTTTCTTGTCCTCCAAATCAACTGCTGGAACGCCTGAGTGGATGGCACCAGAAGTTTTGCGCAATGAAAACTCAAATGAAAAGTGTGATGTATATAGCTTTGGAGTAATTTTGTGGGAACTTGCTACTCTAAGATTGCCTTGGAGTGGGATGAACCCGATGCAAGTTGTGGGTGCGGTGGGTTTCCAGAATCGCCGCCTTGACATCCCTAAAGAAGTTGATCCCCCTGTTGCAAGGATAATTTGGCAATGCTGGCAGACTGAGCCAAACTTGCGCCCCTCATTTTCAGAGCTCACGGTAGCTCTCAAGCCCCTGCAACGACTTGTCACTCCACCAAATATGGACCAGCCCAGCTCACCTCTACGACAAGGGATCTCAGTAAATTCTATACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko00380 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map00380 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

vATP-synt_E

Protein Analysis

918

Amino Acids

101.22

Weight (kDa)

6.11

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EDR1_CTR1_ARMC3_pept	PF14381	141 - 339	1.9e-74	EDR1/CTR1/ARMC3, peptidase-like
PK_Tyr_Ser-Thr	PF07714	639 - 887	2.3e-63	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	640 - 885	1.2e-50	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38600 AT2G38600
fragaria_vesca	FvH4_6g09510 FvH4_6g09510 FvH4_6g09510 FvH4_6g09510 FvH4_6g09510
malus_domestica	MD04G1176900.v1.1 MD12G1192100.v1.1
prunus_persica	Prupe.6G296600_v2.0.a1 Prupe.6G296600_v2.0.a1
pyrus_communis	pycom04g15620 pycom12g17910
rosa_chinensis	RchiOBHm_Chr3g0460091 RchiOBHm_Chr3g0460101
rosa_laevigata	RLG00000025044
rosa_multiflora	Rmu_sc0000449.1_g000054 Rmu_sc0014731.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419850
rosa_rugosa	Rorug03G0039300 Rorug03G0039400 Rorug03G0039500
rosa_samantha	Rh3AG097900 Rh3BG101000 Rh3CG103100 Rh3DG102300
rosa_wichuraiana	Rw3G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1608
AarI	CACCTGC	1 cut(s)	1324
AatII	GACGTC	1 cut(s)	86
Acc16I	TGCGCA	1 cut(s)	2423
Acc36I	ACCTGC	2 cut(s)	1324, 1917
Acc65I	GGTACC	1 cut(s)	184
AccB1I	GGYRCC	4 cut(s)	184, 206, 1312, 2407
AccB7I	CCANNNNNTGG	1 cut(s)	1142
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	2 cut(s)	422, 2347
AccIII	TCCGGA	1 cut(s)	325
AclI	AACGTT	1 cut(s)	77
AcoI	YGGCCR	3 cut(s)	248, 373, 414
AcsI	RAATTY	5 cut(s)	313, 684, 1285, 1893, 2743
AcuI	CTGAAG	3 cut(s)	1463, 1605, 1823
AcyI	GRCGYC	1 cut(s)	83
AflII	CTTAAG	1 cut(s)	908
AflIII	ACRYGT	1 cut(s)	2105
AjiI	CACGTC	1 cut(s)	2108
AjnI	CCWGG	3 cut(s)	434, 1003, 2004
AjuI	GAANNNNNNNTTGG	4 cut(s)	552, 584, 1078, 1110
AloI	GAACNNNNNNTCC	2 cut(s)	598, 630
Alw21I	GWGCWC	3 cut(s)	921, 1528, 2655
Alw26I	GTCTC	4 cut(s)	419, 1477, 1781, 2191
Alw44I	GTGCAC	2 cut(s)	917, 1524
Ama87I	CYCGRG	1 cut(s)	2014
Aor13HI	TCCGGA	1 cut(s)	325
AoxI	GGCC	6 cut(s)	248, 373, 414, 731, 838, 1467
ApaLI	GTGCAC	2 cut(s)	917, 1524
ApeKI	GCWGC	4 cut(s)	286, 1155, 2021, 2065
ApoI	RAATTY	5 cut(s)	313, 684, 1285, 1893, 2743
AseI	ATTAAT	1 cut(s)	948
Asp700I	GAANNNNTTC	1 cut(s)	1994
Asp718I	GGTACC	1 cut(s)	184
AspLEI	GCGC	5 cut(s)	125, 295, 2349, 2424, 2637
AspS9I	GGNCC	4 cut(s)	731, 825, 1127, 2704
AsuC2I	CCSGG	5 cut(s)	47, 127, 140, 241, 2276
AsuHPI	GGTGA	9 cut(s)	78, 84, 104, 398, 664, 1211, 2264, 2342, 2709
AsuII	TTCGAA	2 cut(s)	311, 1281
AvaI	CYCGRG	1 cut(s)	2014
AvaII	GGWCC	3 cut(s)	825, 1127, 2704
BaeGI	GKGCMC	3 cut(s)	921, 1315, 1528
BamHI	GGATCC	2 cut(s)	1000, 1807
BanI	GGYRCC	4 cut(s)	184, 206, 1312, 2407
BanII	GRGCYC	1 cut(s)	2655
BbsI	GAAGAC	1 cut(s)	1911
Bbv12I	GWGCWC	3 cut(s)	921, 1528, 2655
BbvI	GCAGC	4 cut(s)	298, 1167, 2008, 2052
BceAI	ACGGC	4 cut(s)	246, 360, 363, 641
BcgI	CGANNNNNNTGC	4 cut(s)	923, 957, 2065, 2099
BciT130I	CCWGG	3 cut(s)	436, 1005, 2006
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	5 cut(s)	47, 127, 140, 241, 2276
BcoDI	GTCTC	4 cut(s)	419, 1477, 1781, 2191
BfaI	CTAG	2 cut(s)	461, 2000
BfmI	CTRYAG	3 cut(s)	522, 1317, 1719
BfoI	RGCGCY	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	908
BfuAI	ACCTGC	2 cut(s)	1324, 1917
BglII	AGATCT	2 cut(s)	575, 1399
BlpI	GCTNAGC	1 cut(s)	359
Bme1390I	CCNGG	8 cut(s)	47, 127, 140, 241, 436, 1005, 2006, 2276
Bme18I	GGWCC	3 cut(s)	825, 1127, 2704
BmeT110I	CYCGRG	1 cut(s)	2014
BmgBI	CACGTC	1 cut(s)	2108
BmgT120I	GGNCC	4 cut(s)	731, 825, 1127, 2704
BmiI	GGNNCC	9 cut(s)	131, 186, 208, 826, 1002, 1304, 1314, 1809, 2409
BmrFI	CCNGG	8 cut(s)	47, 127, 140, 241, 436, 1005, 2006, 2276
BmrI	ACTGGG	2 cut(s)	1437, 1943
BmsI	GCATC	7 cut(s)	345, 400, 733, 803, 882, 2080, 2511
BmuI	ACTGGG	2 cut(s)	1437, 1943
BpiI	GAAGAC	1 cut(s)	1911
BplI	GAGNNNNNCTC	2 cut(s)	1234, 1266
BpmI	CTGGAG	1 cut(s)	1251
Bpu1102I	GCTNAGC	1 cut(s)	359
Bpu14I	TTCGAA	2 cut(s)	311, 1281
BpuEI	CTTGAG	1 cut(s)	2651
BpuMI	CCSGG	5 cut(s)	47, 127, 140, 241, 2276
BsaHI	GRCGYC	1 cut(s)	83
BsaI	GGTCTC	3 cut(s)	419, 1477, 1781
BsaJI	CCNNGG	9 cut(s)	138, 420, 513, 568, 621, 1306, 1898, 2144, 2501
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	6 cut(s)	260, 290, 416, 446, 2095, 2125
Bse118I	RCCGGY	3 cut(s)	114, 172, 187
Bse1I	ACTGG	4 cut(s)	1432, 1666, 1938, 2318
Bse3DI	GCAATG	2 cut(s)	2431, 2615
BseAI	TCCGGA	1 cut(s)	325
BseBI	CCWGG	3 cut(s)	436, 1005, 2006
BseDI	CCNNGG	9 cut(s)	138, 420, 513, 568, 621, 1306, 1898, 2144, 2501
BseMI	GCAATG	2 cut(s)	2431, 2615
BseMII	CTCAG	8 cut(s)	350, 1137, 1167, 1689, 2022, 2388, 2613, 2751
BseNI	ACTGG	4 cut(s)	1432, 1666, 1938, 2318
BseRI	GAGGAG	3 cut(s)	284, 287, 1230
BseSI	GKGCMC	3 cut(s)	921, 1315, 1528
BseX3I	CGGCCG	3 cut(s)	248, 373, 414
BseXI	GCAGC	4 cut(s)	298, 1167, 2008, 2052
BseYI	CCCAGC	1 cut(s)	2711
BsgI	GTGCAG	2 cut(s)	305, 1665
Bsh1236I	CGCG	2 cut(s)	422, 2347
Bsh1285I	CGRYCG	5 cut(s)	59, 240, 251, 376, 417
BshFI	GGCC	6 cut(s)	250, 375, 416, 733, 840, 1469
BshNI	GGYRCC	4 cut(s)	184, 206, 1312, 2407
BsiEI	CGRYCG	5 cut(s)	59, 240, 251, 376, 417
BsiHKAI	GWGCWC	3 cut(s)	921, 1528, 2655
BsiHKCI	CYCGRG	1 cut(s)	2014
BsiWI	CGTACG	1 cut(s)	344
BslFI	GGGAC	3 cut(s)	193, 1220, 1523
BsmAI	GTCTC	4 cut(s)	419, 1477, 1781, 2191
BsmBI	CGTCTC	1 cut(s)	2191
BsmFI	GGGAC	3 cut(s)	193, 1220, 1523
BsmI	GAATGC	1 cut(s)	2248
BsnI	GGCC	6 cut(s)	250, 375, 416, 733, 840, 1469
Bso31I	GGTCTC	3 cut(s)	419, 1477, 1781
BsoBI	CYCGRG	1 cut(s)	2014
Bsp119I	TTCGAA	2 cut(s)	311, 1281
Bsp1286I	GDGCHC	4 cut(s)	921, 1315, 1528, 2655
Bsp13I	TCCGGA	1 cut(s)	325
Bsp1720I	GCTNAGC	1 cut(s)	359
BspANI	GGCC	6 cut(s)	250, 375, 416, 733, 840, 1469
BspCNI	CTCAG	8 cut(s)	351, 1136, 1168, 1690, 2023, 2389, 2614, 2750
BspEI	TCCGGA	1 cut(s)	325
BspFNI	CGCG	2 cut(s)	422, 2347
BspHI	TCATGA	1 cut(s)	1771
BspLI	GGNNCC	9 cut(s)	131, 186, 208, 826, 1002, 1304, 1314, 1809, 2409
BspMAI	CTGCAG	2 cut(s)	526, 1321
BspMI	ACCTGC	2 cut(s)	1324, 1917
BspT104I	TTCGAA	2 cut(s)	311, 1281
BspT107I	GGYRCC	4 cut(s)	184, 206, 1312, 2407
BspTI	CTTAAG	1 cut(s)	908
BspTNI	GGTCTC	3 cut(s)	419, 1477, 1781
BsrDI	GCAATG	2 cut(s)	2431, 2615
BsrFI	RCCGGY	3 cut(s)	114, 172, 187
BsrI	ACTGG	4 cut(s)	1432, 1666, 1938, 2318
BssAI	RCCGGY	3 cut(s)	114, 172, 187
BssECI	CCNNGG	9 cut(s)	138, 420, 513, 568, 621, 1306, 1898, 2144, 2501
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	4 cut(s)	568, 621, 2144, 2501
Bst2UI	CCWGG	3 cut(s)	436, 1005, 2006
Bst4CI	ACNGT	9 cut(s)	96, 184, 648, 884, 1293, 1307, 1388, 2343, 2659
Bst6I	CTCTTC	2 cut(s)	621, 2187
BstACI	GRCGYC	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	908
BstBI	TTCGAA	2 cut(s)	311, 1281
BstC8I	GCNNGC	7 cut(s)	291, 297, 702, 731, 1166, 2246, 2615
BstDEI	CTNAG	9 cut(s)	359, 1123, 1176, 1698, 2031, 2397, 2492, 2622, 2737
BstDSI	CCRYGG	4 cut(s)	420, 513, 1306, 1898
BstENI	CCTNNNNNAGG	2 cut(s)	433, 2003
BstFNI	CGCG	2 cut(s)	422, 2347
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	5 cut(s)	125, 295, 2349, 2424, 2637
BstMAI	GTCTC	4 cut(s)	419, 1477, 1781, 2191
BstMCI	CGRYCG	5 cut(s)	59, 240, 251, 376, 417
BstNI	CCWGG	3 cut(s)	436, 1005, 2006
BstSCI	CCNGG	8 cut(s)	45, 125, 138, 239, 434, 1003, 2004, 2274
BstSFI	CTRYAG	3 cut(s)	522, 1317, 1719
BstSLI	GKGCMC	3 cut(s)	921, 1315, 1528
BstUI	CGCG	2 cut(s)	422, 2347
BstV1I	GCAGC	4 cut(s)	298, 1167, 2008, 2052
BstV2I	GAAGAC	1 cut(s)	1911
BstX2I	RGATCY	7 cut(s)	339, 575, 988, 1000, 1399, 1807, 2733
BstYI	RGATCY	7 cut(s)	339, 575, 988, 1000, 1399, 1807, 2733
BstZI	CGGCCG	3 cut(s)	248, 373, 414
BsuRI	GGCC	6 cut(s)	250, 375, 416, 733, 840, 1469
BtgI	CCRYGG	4 cut(s)	420, 513, 1306, 1898
BtrI	CACGTC	1 cut(s)	2108
BtsIMutI	CAGTG	2 cut(s)	310, 653
BveI	ACCTGC	2 cut(s)	1324, 1917
Cac8I	GCNNGC	7 cut(s)	291, 297, 702, 731, 1166, 2246, 2615
CciI	TCATGA	1 cut(s)	1771
CciNI	GCGGCCGC	1 cut(s)	414
CfoI	GCGC	5 cut(s)	125, 295, 2349, 2424, 2637
Cfr10I	RCCGGY	3 cut(s)	114, 172, 187
Cfr13I	GGNCC	4 cut(s)	731, 825, 1127, 2704
Cfr42I	CCGCGG	1 cut(s)	423
CspCI	CAANNNNNGTGG	2 cut(s)	1645, 1680
CviAII	CATG	7 cut(s)	99, 1142, 1751, 1772, 1783, 1958, 2754
DdeI	CTNAG	9 cut(s)	359, 1123, 1176, 1698, 2031, 2397, 2492, 2622, 2737
EaeI	YGGCCR	3 cut(s)	248, 373, 414
EagI	CGGCCG	3 cut(s)	248, 373, 414
Eam1104I	CTCTTC	2 cut(s)	621, 2187
EarI	CTCTTC	2 cut(s)	621, 2187
EciI	GGCGGA	1 cut(s)	1013
Ecl136II	GAGCTC	1 cut(s)	2653
EclXI	CGGCCG	3 cut(s)	248, 373, 414
Eco130I	CCWWGG	4 cut(s)	568, 621, 2144, 2501
Eco24I	GRGCYC	1 cut(s)	2655
Eco31I	GGTCTC	3 cut(s)	419, 1477, 1781
Eco47I	GGWCC	3 cut(s)	825, 1127, 2704
Eco52I	CGGCCG	3 cut(s)	248, 373, 414
Eco53kI	GAGCTC	1 cut(s)	2653
Eco57I	CTGAAG	3 cut(s)	1463, 1605, 1823
Eco88I	CYCGRG	1 cut(s)	2014
EcoICRI	GAGCTC	1 cut(s)	2653
EcoNI	CCTNNNNNAGG	2 cut(s)	433, 2003
EcoRI	GAATTC	1 cut(s)	313
EcoRII	CCWGG	3 cut(s)	434, 1003, 2004
EcoT14I	CCWWGG	4 cut(s)	568, 621, 2144, 2501
EcoT38I	GRGCYC	1 cut(s)	2655
ErhI	CCWWGG	4 cut(s)	568, 621, 2144, 2501
Esp3I	CGTCTC	1 cut(s)	2191
FaeI	CATG	7 cut(s)	102, 1145, 1754, 1775, 1786, 1961, 2757
FalI	AAGNNNNNCTT	4 cut(s)	1896, 1928, 2485, 2517
FaqI	GGGAC	3 cut(s)	193, 1220, 1523
FatI	CATG	7 cut(s)	98, 1141, 1750, 1771, 1782, 1957, 2753
FauI	CCCGC	1 cut(s)	722
FauNDI	CATATG	3 cut(s)	723, 1357, 1942
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	660
FriOI	GRGCYC	1 cut(s)	2655
FspBI	CTAG	2 cut(s)	461, 2000
FspI	TGCGCA	1 cut(s)	2423
GlaI	GCGC	5 cut(s)	124, 294, 2348, 2423, 2636
GsaI	CCCAGC	1 cut(s)	2715
GsuI	CTGGAG	1 cut(s)	1251
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	6 cut(s)	250, 375, 416, 733, 840, 1469
HhaI	GCGC	5 cut(s)	125, 295, 2349, 2424, 2637
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	7 cut(s)	102, 1145, 1754, 1775, 1786, 1961, 2757
Hin6I	GCGC	5 cut(s)	123, 293, 2347, 2422, 2635
HinP1I	GCGC	5 cut(s)	123, 293, 2347, 2422, 2635
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	2 cut(s)	20, 1162
HphI	GGTGA	9 cut(s)	78, 84, 104, 398, 664, 1211, 2264, 2342, 2709
Hpy166II	GTNNAC	9 cut(s)	81, 661, 919, 1120, 1509, 1526, 1767, 1954, 2272
Hpy8I	GTNNAC	9 cut(s)	81, 661, 919, 1120, 1509, 1526, 1767, 1954, 2272
Hpy99I	CGWCG	7 cut(s)	166, 169, 172, 238, 355, 381, 473
HpyAV	CCTTC	9 cut(s)	99, 325, 552, 1060, 1104, 1543, 1798, 2150, 2317
HpyCH4III	ACNGT	9 cut(s)	96, 184, 648, 884, 1293, 1307, 1388, 2343, 2659
HpyCH4IV	ACGT	5 cut(s)	77, 83, 456, 1726, 2107
HpyF3I	CTNAG	9 cut(s)	359, 1123, 1176, 1698, 2031, 2397, 2492, 2622, 2737
HpySE526I	ACGT	5 cut(s)	77, 83, 456, 1726, 2107
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	7 cut(s)	102, 1145, 1754, 1775, 1786, 1961, 2757
HspAI	GCGC	5 cut(s)	123, 293, 2347, 2422, 2635
Kpn2I	TCCGGA	1 cut(s)	325
KpnI	GGTACC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	388
KspI	CCGCGG	1 cut(s)	423
LmnI	GCTCC	3 cut(s)	33, 1441, 1640
Lsp1109I	GCAGC	4 cut(s)	298, 1167, 2008, 2052
LweI	GCATC	7 cut(s)	345, 400, 733, 803, 882, 2080, 2511
MaeI	CTAG	2 cut(s)	461, 2000
MaeII	ACGT	5 cut(s)	77, 83, 456, 1726, 2107
MaeIII	GTNAC	3 cut(s)	84, 226, 2686
MfeI	CAATTG	1 cut(s)	807
MflI	RGATCY	7 cut(s)	339, 575, 988, 1000, 1399, 1807, 2733
MhlI	GDGCHC	4 cut(s)	921, 1315, 1528, 2655
MlyI	GAGTC	4 cut(s)	98, 227, 1242, 1373
MmeI	TCCRAC	3 cut(s)	246, 661, 942
MroI	TCCGGA	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	1994
MseI	TTAA	5 cut(s)	909, 948, 1404, 1587, 2207
MslI	CAYNNNNRTG	2 cut(s)	97, 2076
MspA1I	CMGCKG	2 cut(s)	422, 1022
MspCI	CTTAAG	1 cut(s)	908
MspR9I	CCNGG	8 cut(s)	47, 127, 140, 241, 436, 1005, 2006, 2276
MunI	CAATTG	1 cut(s)	807
Mva1269I	GAATGC	1 cut(s)	2248
MvaI	CCWGG	3 cut(s)	436, 1005, 2006
MvnI	CGCG	2 cut(s)	422, 2347
NciI	CCSGG	5 cut(s)	47, 127, 140, 241, 2276
NdeI	CATATG	3 cut(s)	723, 1357, 1942
NlaIII	CATG	7 cut(s)	102, 1145, 1754, 1775, 1786, 1961, 2757
NlaIV	GGNNCC	9 cut(s)	131, 186, 208, 826, 1002, 1304, 1314, 1809, 2409
NmuCI	GTSAC	3 cut(s)	84, 226, 2686
NotI	GCGGCCGC	1 cut(s)	414
NsbI	TGCGCA	1 cut(s)	2423
NspV	TTCGAA	2 cut(s)	311, 1281
PagI	TCATGA	1 cut(s)	1771
PaqCI	CACCTGC	1 cut(s)	1324
PcsI	WCGNNNNNNNCGW	2 cut(s)	188, 2056
PctI	GAATGC	1 cut(s)	2248
PdmI	GAANNNNTTC	1 cut(s)	1994
PfeI	GAWTC	9 cut(s)	244, 518, 1080, 1106, 1187, 1339, 1779, 1835, 2551
Pfl23II	CGTACG	1 cut(s)	344
PflFI	GACNNNGTC	1 cut(s)	430
PflMI	CCANNNNNTGG	1 cut(s)	1142
PfoI	TCCNGGA	1 cut(s)	1003
Ple19I	CGATCG	1 cut(s)	59
PleI	GAGTC	4 cut(s)	98, 226, 1241, 1373
PpsI	GAGTC	4 cut(s)	98, 226, 1241, 1373
PshBI	ATTAAT	1 cut(s)	948
PsiI	TTATAA	1 cut(s)	1608
Psp124BI	GAGCTC	1 cut(s)	2655
Psp1406I	AACGTT	1 cut(s)	77
Psp6I	CCWGG	3 cut(s)	434, 1003, 2004
PspFI	CCCAGC	1 cut(s)	2711
PspGI	CCWGG	3 cut(s)	434, 1003, 2004
PspLI	CGTACG	1 cut(s)	344
PspN4I	GGNNCC	9 cut(s)	131, 186, 208, 826, 1002, 1304, 1314, 1809, 2409
PspPI	GGNCC	4 cut(s)	731, 825, 1127, 2704
PstI	CTGCAG	2 cut(s)	526, 1321
PsuI	RGATCY	7 cut(s)	339, 575, 988, 1000, 1399, 1807, 2733
PsyI	GACNNNGTC	1 cut(s)	430
PvuI	CGATCG	1 cut(s)	59
PvuII	CAGCTG	1 cut(s)	1022
RseI	CAYNNNNRTG	2 cut(s)	97, 2076
SacI	GAGCTC	1 cut(s)	2655
SacII	CCGCGG	1 cut(s)	423
SaqAI	TTAA	5 cut(s)	909, 948, 1404, 1587, 2207
Sau96I	GGNCC	4 cut(s)	731, 825, 1127, 2704
SchI	GAGTC	4 cut(s)	98, 227, 1242, 1373
ScrFI	CCNGG	8 cut(s)	47, 127, 140, 241, 436, 1005, 2006, 2276
SduI	GDGCHC	4 cut(s)	921, 1315, 1528, 2655
SfaNI	GCATC	7 cut(s)	345, 400, 733, 803, 882, 2080, 2511
SfcI	CTRYAG	3 cut(s)	522, 1317, 1719
Sfr303I	CCGCGG	1 cut(s)	423
SfuI	TTCGAA	2 cut(s)	311, 1281
SgrAI	CRCCGGYG	1 cut(s)	172
SgrBI	CCGCGG	1 cut(s)	423
SinI	GGWCC	3 cut(s)	825, 1127, 2704
SmiMI	CAYNNNNRTG	2 cut(s)	97, 2076
SmlI	CTYRAG	2 cut(s)	908, 2666
SmoI	CTYRAG	2 cut(s)	908, 2666
SspMI	CTAG	2 cut(s)	461, 2000
SstI	GAGCTC	1 cut(s)	2655
StyD4I	CCNGG	8 cut(s)	45, 125, 138, 239, 434, 1003, 2004, 2274
StyI	CCWWGG	4 cut(s)	568, 621, 2144, 2501
TaaI	ACNGT	9 cut(s)	96, 184, 648, 884, 1293, 1307, 1388, 2343, 2659
TaiI	ACGT	5 cut(s)	80, 86, 459, 1729, 2110
TatI	WGTACW	3 cut(s)	526, 811, 1119
TauI	GCSGC	9 cut(s)	53, 372, 375, 416, 419, 422, 1212, 2071, 2559
TfiI	GAWTC	9 cut(s)	244, 518, 1080, 1106, 1187, 1339, 1779, 1835, 2551
Tru1I	TTAA	5 cut(s)	909, 948, 1404, 1587, 2207
Tru9I	TTAA	5 cut(s)	909, 948, 1404, 1587, 2207
TscAI	CASTG	2 cut(s)	310, 653
TseFI	GTSAC	3 cut(s)	84, 226, 2686
TseI	GCWGC	4 cut(s)	286, 1155, 2021, 2065
Tsp45I	GTSAC	3 cut(s)	84, 226, 2686
TspGWI	ACGGA	7 cut(s)	210, 332, 530, 1602, 1887, 1991, 2065
TspRI	CASTG	2 cut(s)	310, 653
Tth111I	GACNNNGTC	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	1142
Vha464I	CTTAAG	1 cut(s)	908
VneI	GTGCAC	2 cut(s)	917, 1524
VpaK11BI	GGWCC	3 cut(s)	825, 1127, 2704
VspI	ATTAAT	1 cut(s)	948
XagI	CCTNNNNNAGG	2 cut(s)	433, 2003
XapI	RAATTY	5 cut(s)	313, 684, 1285, 1893, 2743
XmiI	GTMKAC	1 cut(s)	660
XmnI	GAANNNNTTC	1 cut(s)	1994
XspI	CTAG	2 cut(s)	461, 2000
ZraI	GACGTC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.